Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464795.1

Orthogroup ID

OG0004340

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1200

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464795.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atgtcggcatcgactgtatctatcacggcgaacccgacgacccgccggcgacccgtcgtggccgtcgagaagaggtccacccacatcgaactcgtctccgccgaaccccaatcgcagagggccgacgaccaaaccgccgctaacaccagagatctgagtcaccagtccattagaagcgaaaccgccgtcgaccgctccgctcagacccgaagaaccggcgcaacttccaccgtctcacccccctccgcccaccgccgctctcgcaaagccctacccggaaccaagcgacctcgctggctcaggttccttcgtattttcggcaagtggttcggtcttcttgttttcgtcggcggtttggcccagatactcatacgcctcgcttacggctccactgccgccgcgcccatggcgttcaccgacttggagggtcggattgcggaggtcgaagcgtcgatgaaggagacctctaggatgcttcaggttggggtcgacgtggcgagccggaagatcgataaggaggtcggagagttgaggaaggaggtggaggacagaggggtggctttggccggtgaattgaggaaattggaggtgaaaagcgaagggctggagaggtctgtggaggaattgaagagcgtggagtggctgtccaagcaagagtttgaggggatttaccaggagttgaagaaggaagggaagagtggtgagttgggtgcgagtttcgatgatataatggcgtatgccaggaatgtggtggagaaggagatagagaagcatgctgcggatgggcttgcaagggtggattatgcattggggagtggcggtgctgcggttgtgaagcattcggagccttatgtggtggggaaagggaattggtggacgagtatgaggaatggggttcatagtgatgctgataagatgttgagaccgagttttggagagcccgggcagtgttttccattgaaagggagtagtgggtttgttcagattaagctcaggacagcaattattcccgaggctatcactctggagcatgtttcaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

347

Amino Acids

38.13

Weight (kDa)

9.45

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10730 AT5G04990
fragaria_vesca	FvH4_7g04870
malus_domestica	MD02G1266700.v1.1 MD07G1053000.v1.1
prunus_persica	Prupe.2G056900_v2.0.a1
pyrus_communis	pycom02g22820 pycom07g04100
rosa_chinensis	RchiOBHm_Chr1g0324281 RchiOBHm_Chr1g0330551
rosa_laevigata	RLG00000029806 RLG00000030209
rosa_multiflora	Rmu_co8045364.1_g000001 Rmu_co8316659.1_g000001 Rmu_co8464795.1_g000001 Rmu_sc0001850.1_g000044 Rmu_sc0002365.1_g000026 Rmu_sc0007290.1_g000001 Rmu_sc0037448.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432660 Rroxscaffold_4G00319920
rosa_rugosa	Rorug01G0089200 Rorug02G0533700
rosa_samantha	Rh1AG060500 Rh1AG107300 Rh1BG086100 Rh1CG103200 Rh1DG067200 Rh1DG112900
rosa_wichuraiana	Rw1G005160 Rw1G008530 Rw1G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	195, 200, 258
AccI	GTMKAC	2 cut(s)	189, 489
AccII	CGCG	1 cut(s)	401
AcoI	YGGCCR	2 cut(s)	60, 564
AcuI	CTGAAG	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	932, 962
AgsI	TTSAA	4 cut(s)	628, 682, 961, 1038
AjiI	CACGTC	1 cut(s)	493
AjnI	CCWGG	2 cut(s)	672, 740
AluBI	AGCT	1 cut(s)	991
AluI	AGCT	1 cut(s)	991
Alw26I	GTCTC	4 cut(s)	100, 238, 455, 916
Ama87I	CYCGRG	2 cut(s)	941, 1010
AoxI	GGCC	4 cut(s)	60, 120, 357, 564
ApeKI	GCWGC	2 cut(s)	776, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
AspLEI	GCGC	2 cut(s)	221, 403
AspS9I	GGNCC	3 cut(s)	75, 120, 358
AsuC2I	CCSGG	3 cut(s)	276, 942, 943
AsuHPI	GGTGA	6 cut(s)	152, 228, 406, 581, 601, 713
AvaI	CYCGRG	2 cut(s)	941, 1010
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	942
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	763, 811
BccI	CCATC	1 cut(s)	776
BceAI	ACGGC	4 cut(s)	42, 47, 170, 400
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	2 cut(s)	674, 742
BcnI	CCSGG	3 cut(s)	276, 942, 943
BcoDI	GTCTC	4 cut(s)	100, 238, 455, 916
BfaI	CTAG	1 cut(s)	468
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	6 cut(s)	138, 256, 396, 399, 777, 825
BlsI	GCNGC	6 cut(s)	139, 257, 397, 400, 778, 826
Bme1390I	CCNGG	5 cut(s)	276, 674, 742, 942, 943
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	2 cut(s)	941, 1010
BmgBI	CACGTC	1 cut(s)	493
BmgT120I	GGNCC	3 cut(s)	75, 120, 358
BmiI	GGNNCC	4 cut(s)	280, 305, 388, 846
BmrFI	CCNGG	5 cut(s)	276, 674, 742, 942, 943
BmsI	GCATC	3 cut(s)	17, 462, 895
BpiI	GAAGAC	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	626
Bpu10I	CCTNAGC	2 cut(s)	299, 992
BpuMI	CCSGG	3 cut(s)	276, 942, 943
Bsa29I	ATCGAT	1 cut(s)	510
BsaI	GGTCTC	2 cut(s)	455, 916
BsaJI	CCNNGG	3 cut(s)	405, 941, 1011
BsaXI	ACNNNNNCTCC	4 cut(s)	629, 659, 805, 835
Bsc4I	CCNNNNNNNGG	2 cut(s)	932, 962
Bse118I	RCCGGY	3 cut(s)	45, 215, 566
Bse1I	ACTGG	1 cut(s)	163
BseBI	CCWGG	2 cut(s)	674, 742
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	405, 941, 1011
BseGI	GGATG	2 cut(s)	477, 787
BseLI	CCNNNNNNNGG	2 cut(s)	932, 962
BseMII	CTCAG	4 cut(s)	146, 215, 313, 1006
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	763, 811
Bsh1236I	CGCG	1 cut(s)	401
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	4 cut(s)	62, 122, 359, 566
BshVI	ATCGAT	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	193
BsiHKCI	CYCGRG	2 cut(s)	941, 1010
BsiSI	CCGG	6 cut(s)	46, 216, 276, 502, 567, 942
BslI	CCNNNNNNNGG	2 cut(s)	932, 962
BsmAI	GTCTC	4 cut(s)	100, 238, 455, 916
BsmBI	CGTCTC	2 cut(s)	100, 238
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	4 cut(s)	62, 122, 359, 566
Bso31I	GGTCTC	2 cut(s)	455, 916
BsoBI	CYCGRG	2 cut(s)	941, 1010
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp143I	GATC	2 cut(s)	151, 507
Bsp19I	CCATGG	1 cut(s)	405
BspANI	GGCC	4 cut(s)	62, 122, 359, 566
BspCNI	CTCAG	4 cut(s)	147, 214, 312, 1005
BspDI	ATCGAT	1 cut(s)	510
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	4 cut(s)	280, 305, 388, 846
BspQI	GCTCTTC	1 cut(s)	623
BspTNI	GGTCTC	2 cut(s)	455, 916
BsrBI	CCGCTC	3 cut(s)	195, 200, 258
BsrFI	RCCGGY	3 cut(s)	45, 215, 566
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	3 cut(s)	45, 215, 566
BssECI	CCNNGG	3 cut(s)	405, 941, 1011
BssMI	GATC	2 cut(s)	151, 507
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	674, 742
Bst4CI	ACNGT	2 cut(s)	16, 232
Bst6I	CTCTTC	3 cut(s)	65, 623, 689
BstC8I	GCNNGC	5 cut(s)	47, 296, 499, 774, 789
BstDEI	CTNAG	4 cut(s)	155, 201, 299, 992
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	477, 787
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	2 cut(s)	221, 403
BstKTI	GATC	2 cut(s)	154, 510
BstMAI	GTCTC	4 cut(s)	100, 238, 455, 916
BstMBI	GATC	2 cut(s)	151, 507
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 407, 649, 844
BstNI	CCWGG	2 cut(s)	674, 742
BstNSI	RCATGY	2 cut(s)	776, 1034
BstSCI	CCNGG	5 cut(s)	274, 672, 740, 940, 941
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	763, 811
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	510
BsuRI	GGCC	4 cut(s)	62, 122, 359, 566
BsuTUI	ATCGAT	1 cut(s)	510
BtgI	CCRYGG	1 cut(s)	405
BtrI	CACGTC	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	477, 787
BtsI	GCAGTG	2 cut(s)	390, 953
BtsIMutI	CAGTG	2 cut(s)	390, 953
Cac8I	GCNNGC	5 cut(s)	47, 296, 499, 774, 789
CfoI	GCGC	2 cut(s)	221, 403
Cfr10I	RCCGGY	3 cut(s)	45, 215, 566
Cfr13I	GGNCC	3 cut(s)	75, 120, 358
Cfr9I	CCCGGG	1 cut(s)	941
ClaI	ATCGAT	1 cut(s)	510
CseI	GACGC	1 cut(s)	438
CviAII	CATG	3 cut(s)	406, 773, 1031
DdeI	CTNAG	4 cut(s)	155, 201, 299, 992
DpnI	GATC	2 cut(s)	153, 509
DpnII	GATC	2 cut(s)	151, 507
EaeI	YGGCCR	2 cut(s)	60, 564
Eam1104I	CTCTTC	3 cut(s)	65, 623, 689
EarI	CTCTTC	3 cut(s)	65, 623, 689
EciI	GGCGGA	2 cut(s)	88, 235
Eco130I	CCWWGG	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	942
Eco31I	GGTCTC	2 cut(s)	455, 916
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	461
Eco88I	CYCGRG	2 cut(s)	941, 1010
EcoRII	CCWGG	2 cut(s)	672, 740
EcoT14I	CCWWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	942
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	2 cut(s)	100, 238
FaeI	CATG	3 cut(s)	409, 776, 1034
FatI	CATG	3 cut(s)	405, 772, 1030
FauI	CCCGC	1 cut(s)	50
FblI	GTMKAC	2 cut(s)	189, 489
Fnu4HI	GCNGC	6 cut(s)	138, 256, 396, 399, 777, 825
FokI	GGATG	2 cut(s)	484, 794
FriOI	GRGCYC	1 cut(s)	942
Fsp4HI	GCNGC	6 cut(s)	138, 256, 396, 399, 777, 825
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	2 cut(s)	220, 402
GluI	GCNGC	6 cut(s)	138, 256, 396, 399, 777, 825
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	4 cut(s)	62, 122, 359, 566
HapII	CCGG	6 cut(s)	46, 216, 276, 502, 567, 942
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	2 cut(s)	221, 403
Hin1II	CATG	3 cut(s)	409, 776, 1034
Hin6I	GCGC	2 cut(s)	219, 401
HinP1I	GCGC	2 cut(s)	219, 401
HincII	GTYRAC	2 cut(s)	190, 490
HindII	GTYRAC	2 cut(s)	190, 490
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	6 cut(s)	46, 216, 276, 502, 567, 942
HphI	GGTGA	6 cut(s)	152, 228, 406, 581, 601, 713
Hpy166II	GTNNAC	5 cut(s)	78, 190, 414, 490, 876
Hpy188I	TCNGA	6 cut(s)	156, 204, 432, 524, 844, 984
Hpy188III	TCNNGA	4 cut(s)	67, 994, 1010, 1025
Hpy8I	GTNNAC	5 cut(s)	78, 190, 414, 490, 876
Hpy99I	CGWCG	8 cut(s)	40, 59, 68, 128, 191, 350, 454, 494
HpyAV	CCTTC	7 cut(s)	317, 451, 529, 593, 679, 683, 751
HpyCH4III	ACNGT	2 cut(s)	16, 232
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	2 cut(s)	791, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 407, 649, 844
HpyF3I	CTNAG	4 cut(s)	155, 201, 299, 992
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	409, 776, 1034
HspAI	GCGC	2 cut(s)	219, 401
KroI	GCCGGC	1 cut(s)	45
KroNI	GCCGGC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	151, 507
LguI	GCTCTTC	1 cut(s)	623
LmnI	GCTCC	4 cut(s)	200, 392, 844, 1027
Lsp1109I	GCAGC	2 cut(s)	763, 811
LweI	GCATC	3 cut(s)	17, 462, 895
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	153, 509
MbiI	CCGCTC	3 cut(s)	195, 200, 258
MboI	GATC	2 cut(s)	151, 507
MboII	GAAGA	7 cut(s)	82, 222, 326, 517, 640, 694, 706
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	942
MluCI	AATT	5 cut(s)	572, 581, 623, 868, 1002
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	2 cut(s)	410, 502
Mph1103I	ATGCAT	1 cut(s)	808
MreI	CGCCGGCG	1 cut(s)	45
MroNI	GCCGGC	1 cut(s)	45
MseI	TTAA	1 cut(s)	987
MslI	CAYNNNNRTG	1 cut(s)	903
MspI	CCGG	6 cut(s)	46, 216, 276, 502, 567, 942
MspR9I	CCNGG	5 cut(s)	276, 674, 742, 942, 943
Mva1269I	GAATGC	1 cut(s)	838
MvaI	CCWGG	2 cut(s)	674, 742
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	4 cut(s)	261, 407, 649, 844
NaeI	GCCGGC	1 cut(s)	47
NciI	CCSGG	3 cut(s)	276, 942, 943
NcoI	CCATGG	1 cut(s)	405
NdeII	GATC	2 cut(s)	151, 507
NgoMIV	GCCGGC	1 cut(s)	45
NlaIII	CATG	3 cut(s)	409, 776, 1034
NlaIV	GGNNCC	4 cut(s)	280, 305, 388, 846
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	808
NspI	RCATGY	2 cut(s)	776, 1034
PaeI	GCATGC	1 cut(s)	776
PciSI	GCTCTTC	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	3 cut(s)	32, 63, 99
PctI	GAATGC	1 cut(s)	838
PdiI	GCCGGC	1 cut(s)	47
PkrI	GCNGC	6 cut(s)	139, 257, 397, 400, 778, 826
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	672, 740
PspGI	CCWGG	2 cut(s)	672, 740
PspN4I	GGNNCC	4 cut(s)	280, 305, 388, 846
PspPI	GGNCC	3 cut(s)	75, 120, 358
PsuI	RGATCY	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	903
SalI	GTCGAC	2 cut(s)	188, 488
SapI	GCTCTTC	1 cut(s)	623
SaqAI	TTAA	1 cut(s)	987
SatI	GCNGC	6 cut(s)	138, 256, 396, 399, 777, 825
Sau3AI	GATC	2 cut(s)	151, 507
Sau96I	GGNCC	3 cut(s)	75, 120, 358
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	5 cut(s)	276, 674, 742, 942, 943
SduI	GDGCHC	1 cut(s)	942
SfaNI	GCATC	3 cut(s)	17, 462, 895
SgrAI	CRCCGGYG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	75
SmaI	CCCGGG	1 cut(s)	943
SmiMI	CAYNNNNRTG	1 cut(s)	903
SphI	GCATGC	1 cut(s)	776
SrfI	GCCCGGGC	1 cut(s)	943
Sse9I	AATT	5 cut(s)	572, 581, 623, 868, 1002
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	5 cut(s)	274, 672, 740, 940, 941
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	16, 232
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	9 cut(s)	11, 66, 87, 189, 444, 452, 489, 510, 720
TaqII	GACCGA	2 cut(s)	320, 940
TasI	AATT	5 cut(s)	572, 581, 623, 868, 1002
TauI	GCSGC	4 cut(s)	140, 258, 398, 401
Tru1I	TTAA	1 cut(s)	987
Tru9I	TTAA	1 cut(s)	987
TscAI	CASTG	2 cut(s)	397, 953
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	776, 824
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	470, 887
TspMI	CCCGGG	1 cut(s)	941
TspRI	CASTG	2 cut(s)	397, 953
VpaK11BI	GGWCC	1 cut(s)	75
XceI	RCATGY	2 cut(s)	776, 1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	748
XmaI	CCCGGG	1 cut(s)	941
XmiI	GTMKAC	2 cut(s)	189, 489
XspI	CTAG	1 cut(s)	468
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.