FvH4_7g04870

SUN domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
5292496 .. 5296225
3730 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04870.t1

Sequence Viewer

Length: 1344 bp
ATGTCGGCATCCACTGTTTCTATCACGGCCACCCCGACGACCCGGAGGCGATCCGTCGTCGCCGTCGAGAAGAGGTCGGCCAACATCGAACTCGTCTCCGCCGAGCCCCAATCTCAGAGGGCCGACGACCCAACCGCCCCTAACAACAGAGATCTGAGTCACCAGTCCGTCAGAAGCGAAACCGCCGTCGACCGTTCCGCTCAGACCCGACGAACCGCCGTCACTTCCACCGTGTCTCCGCCGTCCGGTCGCCGCTCCTCCCGCAAAGCCCTAGCCGGAACTCACAGACCTCGCTGGCTCAGGCTCCTCCGCATCTTCGGCAAGTGGCTCGGCCTTCTGGTTTTCGTCGGCGGTTTGGGCCAGATACTCACGCGCCTCGCGTACGGCCCCAGCGCCGCCGGGCCCATGGCGTTCACCGACTTGGAGGGCCGGATTGCGGAGGTCGAGGCGTCGATGAAGGAGACGAGTCGGATGCTTCAGGTTGGGGTGGACTTGGCGAGCCGGAAGATTGATAAGGAGGTGGGAGAGTTGAGGAAGGAAGGGGTTGCTTTGGCCAGTGACCTGAGGAGATTGGAGGCCAAGAGTGAAGGGCTGGAGAGGTCCGTGGAGGAATTGAAGAGCGTCGAGTGGCTGTCGAAGCAAGAGTTCGAGAGGATTTATGAGGACTTGAGGAAGGAAGGGAAGAATGGTGAGTTGGGTGCGAGTTTCGATGATATAATGGCCTATGCCAGGAATGTGGTGGAGAAGGAGATAGAGAAGCATGCTGCGGACGGGCTTGCCAGGGTGGATTACGCATTGGGGAGTGGTGGCGCTGCGGTTGTGAAGCATTCCGAGCCGTATGTGGTGGGTAAAGGGAGTGGTTGGTGGACCAGTATGAGGAATGGGGTTCATAGTGATGCTGAGAAGGTGTTGAAGCCAAGTTTTGGAGAGCCTGGGGAGTGTTTTCCTTTGAAAGGGAGTAGTGGTTTTGTGCAGATTAAGCTCAGGACAGCAATTATTCCTGAGGCTATCACTCTGGAACATGTTTCTAAGAGTGTTGCTTATGACAGAAGGAGTGCTCCCAAGGACTGTCGTGTATCTGCATGGCTGCGAGGAGTGCATGATCAGGATTTAGAAGTAGATACAGAGAAGATGTTTCTTTTGGCTGAGTTCACATATGACCTTGAGAAGAGCAATGCCCAGACAGTCACTGTGTCGGACTCAGCTGTGTCTAACGTTGTTGACACAGTGAGGTTTGACTTCACATCCAATCATGGTAGCCCTTCACATACTTGCATATATCGTCTGCGAGTTCATGGGCATGAACCTGAATCTGTTTCTGTGGTGGCCATGCACCAGTCTTAA

Protein Analysis

448

Amino Acids

49.1

Weight (kDa)

8.29

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sad1_UNC PF07738 298 - 434 1.9e-36 Sad1 / UNC-like C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 923
AccBSI CCGCTC 2 cut(s) 200, 255
AccI GTMKAC 1 cut(s) 189
AccII CGCG 2 cut(s) 373, 380
AclI AACGTT 1 cut(s) 1215
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 4 cut(s) 27, 78, 552, 1326
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 6 cut(s) 245, 436, 729, 876, 923, 953
AflIII ACRYGT 1 cut(s) 1021
AgsI TTSAA 3 cut(s) 616, 913, 952
AjnI CCWGG 3 cut(s) 728, 779, 931
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
AluBI AGCT 2 cut(s) 982, 1205
AluI AGCT 2 cut(s) 982, 1205
Alw21I GWGCWC 1 cut(s) 1060
Alw26I GTCTC 3 cut(s) 100, 240, 455
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 1190
ApaI GGGCCC 1 cut(s) 405
ApeKI GCWGC 3 cut(s) 764, 812, 1087
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 3 cut(s) 375, 395, 812
AspS9I GGNCC 8 cut(s) 120, 358, 386, 401, 402, 427, 600, 867
AsuC2I CCSGG 2 cut(s) 43, 400
AsuHPI GGTGA 3 cut(s) 152, 406, 701
AvaII GGWCC 2 cut(s) 600, 867
AxyI CCTNAGG 2 cut(s) 563, 1002
BaeGI GKGCMC 1 cut(s) 405
BalI TGGCCA 2 cut(s) 554, 1328
BanII GRGCYC 2 cut(s) 108, 405
Bbv12I GWGCWC 1 cut(s) 1060
BbvI GCAGC 3 cut(s) 751, 799, 1074
BceAI ACGGC 7 cut(s) 42, 47, 170, 203, 226, 400, 820
BcgI CGANNNNNNTGC 4 cut(s) 310, 344, 454, 488
BciT130I CCWGG 3 cut(s) 730, 781, 933
BclI TGATCA 1 cut(s) 1102
BcnI CCSGG 2 cut(s) 43, 400
BcoDI GTCTC 3 cut(s) 100, 240, 455
BfaI CTAG 1 cut(s) 272
BfoI RGCGCY 2 cut(s) 396, 813
BglII AGATCT 1 cut(s) 151
BisI GCNGC 5 cut(s) 253, 396, 765, 813, 1088
BlsI GCNGC 5 cut(s) 254, 397, 766, 814, 1089
Bme1390I CCNGG 5 cut(s) 43, 400, 730, 781, 933
Bme18I GGWCC 2 cut(s) 600, 867
BmgT120I GGNCC 8 cut(s) 120, 358, 386, 401, 402, 427, 600, 867
BmiI GGNNCC 3 cut(s) 305, 388, 403
BmrFI CCNGG 5 cut(s) 43, 400, 730, 781, 933
BmsI GCATC 4 cut(s) 17, 321, 462, 886
BpmI CTGGAG 1 cut(s) 614
Bpu10I CCTNAGC 2 cut(s) 299, 983
BpuEI CTTGAG 2 cut(s) 688, 1184
BpuMI CCSGG 2 cut(s) 43, 400
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 5 cut(s) 405, 603, 780, 932, 1062
BsaWI WCCGGW 1 cut(s) 245
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 949, 979
Bsc4I CCNNNNNNNGG 6 cut(s) 245, 436, 729, 876, 923, 953
Bse1I ACTGG 4 cut(s) 163, 555, 870, 1336
Bse21I CCTNAGG 2 cut(s) 563, 1002
Bse3DI GCAATG 1 cut(s) 1180
BseBI CCWGG 3 cut(s) 730, 781, 933
BseDI CCNNGG 5 cut(s) 405, 603, 780, 932, 1062
BseGI GGATG 3 cut(s) 8, 477, 1244
BseLI CCNNNNNNNGG 6 cut(s) 245, 436, 729, 876, 923, 953
BseMI GCAATG 1 cut(s) 1180
BseNI ACTGG 4 cut(s) 163, 555, 870, 1336
BseRI GAGGAG 4 cut(s) 247, 296, 580, 1107
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 3 cut(s) 751, 799, 1074
BseYI CCCAGC 1 cut(s) 389
BsgI GTGCAG 1 cut(s) 992
Bsh1236I CGCG 2 cut(s) 373, 380
Bsh1285I CGRYCG 2 cut(s) 193, 250
BsiEI CGRYCG 2 cut(s) 193, 250
BsiHKAI GWGCWC 1 cut(s) 1060
BsiSI CCGG 6 cut(s) 43, 246, 276, 399, 430, 502
BsiWI CGTACG 1 cut(s) 381
BslI CCNNNNNNNGG 6 cut(s) 245, 436, 729, 876, 923, 953
BsmAI GTCTC 3 cut(s) 100, 240, 455
BsmBI CGTCTC 2 cut(s) 100, 455
BsmI GAATGC 1 cut(s) 826
Bsp120I GGGCCC 1 cut(s) 401
Bsp1286I GDGCHC 3 cut(s) 108, 405, 1060
Bsp143I GATC 3 cut(s) 50, 151, 1102
Bsp19I CCATGG 1 cut(s) 405
BspFNI CGCG 2 cut(s) 373, 380
BspLI GGNNCC 3 cut(s) 305, 388, 403
BspPI GGATC 1 cut(s) 45
BspQI GCTCTTC 2 cut(s) 611, 1163
BsrBI CCGCTC 2 cut(s) 200, 255
BsrDI GCAATG 1 cut(s) 1180
BsrI ACTGG 4 cut(s) 163, 555, 870, 1336
BssECI CCNNGG 5 cut(s) 405, 603, 780, 932, 1062
BssMI GATC 3 cut(s) 50, 151, 1102
BssNI GRCGYC 1 cut(s) 449
BssT1I CCWWGG 2 cut(s) 405, 1062
Bst2UI CCWGG 3 cut(s) 730, 781, 933
Bst4CI ACNGT 7 cut(s) 16, 194, 232, 1070, 1186, 1192, 1228
Bst6I CTCTTC 3 cut(s) 65, 611, 1163
BstACI GRCGYC 1 cut(s) 449
BstC8I GCNNGC 4 cut(s) 296, 499, 762, 777
BstDSI CCRYGG 2 cut(s) 405, 603
BstENI CCTNNNNNAGG 2 cut(s) 727, 951
BstF5I GGATG 3 cut(s) 8, 477, 1244
BstFNI CGCG 2 cut(s) 373, 380
BstH2I RGCGCY 2 cut(s) 396, 813
BstHHI GCGC 3 cut(s) 375, 395, 812
BstKTI GATC 3 cut(s) 53, 154, 1105
BstMAI GTCTC 3 cut(s) 100, 240, 455
BstMBI GATC 3 cut(s) 50, 151, 1102
BstMCI CGRYCG 2 cut(s) 193, 250
BstMWI GCNNNNNNNGC 7 cut(s) 261, 318, 357, 637, 832, 979, 1096
BstNI CCWGG 3 cut(s) 730, 781, 933
BstNSI RCATGY 2 cut(s) 764, 1025
BstSCI CCNGG 5 cut(s) 41, 398, 728, 779, 931
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 2 cut(s) 373, 380
BstV1I GCAGC 3 cut(s) 751, 799, 1074
BstX2I RGATCY 1 cut(s) 151
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 1 cut(s) 151
Bsu36I CCTNAGG 2 cut(s) 563, 1002
BtgI CCRYGG 2 cut(s) 405, 603
BtsCI GGATG 3 cut(s) 8, 477, 1244
BtsIMutI CAGTG 4 cut(s) 12, 562, 1188, 1233
Cac8I GCNNGC 4 cut(s) 296, 499, 762, 777
CaiI CAGNNNCTG 1 cut(s) 1190
CfoI GCGC 3 cut(s) 375, 395, 812
Cfr13I GGNCC 8 cut(s) 120, 358, 386, 401, 402, 427, 600, 867
CseI GACGC 2 cut(s) 438, 610
Csp6I GTAC 1 cut(s) 382
CviAII CATG 9 cut(s) 406, 761, 1022, 1083, 1100, 1253, 1295, 1301, 1330
CviQI GTAC 1 cut(s) 382
DpnI GATC 3 cut(s) 52, 153, 1104
DpnII GATC 3 cut(s) 50, 151, 1102
EaeI YGGCCR 4 cut(s) 27, 78, 552, 1326
Eam1104I CTCTTC 3 cut(s) 65, 611, 1163
EarI CTCTTC 3 cut(s) 65, 611, 1163
EciI GGCGGA 2 cut(s) 88, 228
Eco130I CCWWGG 2 cut(s) 405, 1062
Eco24I GRGCYC 2 cut(s) 108, 405
Eco47I GGWCC 2 cut(s) 600, 867
Eco57I CTGAAG 1 cut(s) 461
Eco81I CCTNAGG 2 cut(s) 563, 1002
EcoNI CCTNNNNNAGG 2 cut(s) 727, 951
EcoRII CCWGG 3 cut(s) 728, 779, 931
EcoT14I CCWWGG 2 cut(s) 405, 1062
EcoT38I GRGCYC 2 cut(s) 108, 405
ErhI CCWWGG 2 cut(s) 405, 1062
Esp3I CGTCTC 2 cut(s) 100, 455
FaeI CATG 9 cut(s) 409, 764, 1025, 1086, 1103, 1256, 1298, 1304, 1333
FatI CATG 9 cut(s) 405, 760, 1021, 1082, 1099, 1252, 1294, 1300, 1329
FauI CCCGC 1 cut(s) 269
FauNDI CATATG 1 cut(s) 1156
FbaI TGATCA 1 cut(s) 1102
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 253, 396, 765, 813, 1088
FokI GGATG 2 cut(s) 484, 1231
FriOI GRGCYC 2 cut(s) 108, 405
Fsp4HI GCNGC 5 cut(s) 253, 396, 765, 813, 1088
FspBI CTAG 1 cut(s) 272
GlaI GCGC 3 cut(s) 374, 394, 811
GluI GCNGC 5 cut(s) 253, 396, 765, 813, 1088
GsaI CCCAGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 614
HaeII RGCGCY 2 cut(s) 396, 813
HapII CCGG 6 cut(s) 43, 246, 276, 399, 430, 502
HgaI GACGC 2 cut(s) 438, 610
HhaI GCGC 3 cut(s) 375, 395, 812
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 9 cut(s) 409, 764, 1025, 1086, 1103, 1256, 1298, 1304, 1333
Hin6I GCGC 3 cut(s) 373, 393, 810
HinP1I GCGC 3 cut(s) 373, 393, 810
HincII GTYRAC 2 cut(s) 190, 1222
HindII GTYRAC 2 cut(s) 190, 1222
HinfI GANTC 4 cut(s) 157, 466, 1199, 1310
HpaII CCGG 6 cut(s) 43, 246, 276, 399, 430, 502
HphI GGTGA 3 cut(s) 152, 406, 701
Hpy166II GTNNAC 6 cut(s) 190, 414, 490, 867, 1152, 1222
Hpy188I TCNGA 7 cut(s) 117, 156, 173, 204, 471, 832, 1198
Hpy188III TCNNGA 6 cut(s) 67, 649, 985, 1001, 1016, 1106
Hpy8I GTNNAC 6 cut(s) 190, 414, 490, 867, 1152, 1222
HpyCH4III ACNGT 7 cut(s) 16, 194, 232, 1070, 1186, 1192, 1228
HpyCH4IV ACGT 1 cut(s) 1215
HpyCH4V TGCA 5 cut(s) 973, 1082, 1099, 1275, 1333
HpyF10VI GCNNNNNNNGC 7 cut(s) 261, 318, 357, 637, 832, 979, 1096
HpySE526I ACGT 1 cut(s) 1215
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 9 cut(s) 409, 764, 1025, 1086, 1103, 1256, 1298, 1304, 1333
HspAI GCGC 3 cut(s) 373, 393, 810
Ksp22I TGATCA 1 cut(s) 1102
Kzo9I GATC 3 cut(s) 50, 151, 1102
LguI GCTCTTC 2 cut(s) 611, 1163
LmnI GCTCC 3 cut(s) 260, 309, 1063
Lsp1109I GCAGC 3 cut(s) 751, 799, 1074
LweI GCATC 4 cut(s) 17, 321, 462, 886
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 1215
MaeIII GTNAC 4 cut(s) 158, 220, 557, 1186
MalI GATC 3 cut(s) 52, 153, 1104
MbiI CCGCTC 2 cut(s) 200, 255
MboI GATC 3 cut(s) 50, 151, 1102
MboII GAAGA 7 cut(s) 82, 307, 517, 628, 694, 1141, 1180
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 3 cut(s) 108, 405, 1060
MlsI TGGCCA 2 cut(s) 554, 1328
MluCI AATT 2 cut(s) 611, 993
MluNI TGGCCA 2 cut(s) 554, 1328
MlyI GAGTC 3 cut(s) 166, 475, 1193
MmeI TCCRAC 2 cut(s) 449, 1176
Mox20I TGGCCA 2 cut(s) 554, 1328
MscI TGGCCA 2 cut(s) 554, 1328
MseI TTAA 2 cut(s) 978, 1342
MslI CAYNNNNRTG 2 cut(s) 894, 1299
Msp20I TGGCCA 2 cut(s) 554, 1328
MspA1I CMGCKG 1 cut(s) 1205
MspI CCGG 6 cut(s) 43, 246, 276, 399, 430, 502
MspR9I CCNGG 5 cut(s) 43, 400, 730, 781, 933
Mva1269I GAATGC 1 cut(s) 826
MvaI CCWGG 3 cut(s) 730, 781, 933
MvnI CGCG 2 cut(s) 373, 380
MwoI GCNNNNNNNGC 7 cut(s) 261, 318, 357, 637, 832, 979, 1096
NciI CCSGG 2 cut(s) 43, 400
NcoI CCATGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 1156
NdeII GATC 3 cut(s) 50, 151, 1102
NlaIII CATG 9 cut(s) 409, 764, 1025, 1086, 1103, 1256, 1298, 1304, 1333
NlaIV GGNNCC 3 cut(s) 305, 388, 403
NmeAIII GCCGAG 2 cut(s) 127, 309
NmuCI GTSAC 4 cut(s) 158, 220, 557, 1186
NspI RCATGY 2 cut(s) 764, 1025
PaeI GCATGC 1 cut(s) 764
PciI ACATGT 1 cut(s) 1021
PciSI GCTCTTC 2 cut(s) 611, 1163
PcsI WCGNNNNNNNCGW 4 cut(s) 32, 63, 99, 377
PctI GAATGC 1 cut(s) 826
PfeI GAWTC 1 cut(s) 1310
Pfl23II CGTACG 1 cut(s) 381
PflMI CCANNNNNTGG 1 cut(s) 923
PkrI GCNGC 5 cut(s) 254, 397, 766, 814, 1089
PleI GAGTC 3 cut(s) 165, 474, 1193
PpsI GAGTC 3 cut(s) 165, 474, 1193
PscI ACATGT 1 cut(s) 1021
Psp1406I AACGTT 1 cut(s) 1215
Psp6I CCWGG 3 cut(s) 728, 779, 931
PspFI CCCAGC 1 cut(s) 389
PspGI CCWGG 3 cut(s) 728, 779, 931
PspLI CGTACG 1 cut(s) 381
PspN4I GGNNCC 3 cut(s) 305, 388, 403
PspOMI GGGCCC 1 cut(s) 401
PspPI GGNCC 8 cut(s) 120, 358, 386, 401, 402, 427, 600, 867
PstNI CAGNNNCTG 1 cut(s) 1190
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 2 cut(s) 894, 1299
SalI GTCGAC 1 cut(s) 188
SapI GCTCTTC 2 cut(s) 611, 1163
SaqAI TTAA 2 cut(s) 978, 1342
SatI GCNGC 5 cut(s) 253, 396, 765, 813, 1088
Sau3AI GATC 3 cut(s) 50, 151, 1102
Sau96I GGNCC 8 cut(s) 120, 358, 386, 401, 402, 427, 600, 867
SchI GAGTC 3 cut(s) 166, 475, 1193
ScrFI CCNGG 5 cut(s) 43, 400, 730, 781, 933
SduI GDGCHC 3 cut(s) 108, 405, 1060
SfaNI GCATC 4 cut(s) 17, 321, 462, 886
SinI GGWCC 2 cut(s) 600, 867
SmiMI CAYNNNNRTG 2 cut(s) 894, 1299
SmlI CTYRAG 2 cut(s) 667, 1163
SmoI CTYRAG 2 cut(s) 667, 1163
SphI GCATGC 1 cut(s) 764
Sse9I AATT 2 cut(s) 611, 993
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 5 cut(s) 41, 398, 728, 779, 931
StyI CCWWGG 2 cut(s) 405, 1062
TaaI ACNGT 7 cut(s) 16, 194, 232, 1070, 1186, 1192, 1228
TaiI ACGT 1 cut(s) 1218
TaqI TCGA 9 cut(s) 66, 87, 189, 444, 452, 624, 635, 648, 708
TasI AATT 2 cut(s) 611, 993
TauI GCSGC 2 cut(s) 255, 398
TfiI GAWTC 1 cut(s) 1310
Tru1I TTAA 2 cut(s) 978, 1342
Tru9I TTAA 2 cut(s) 978, 1342
TscAI CASTG 4 cut(s) 19, 562, 1195, 1233
TseFI GTSAC 4 cut(s) 158, 220, 557, 1186
TseI GCWGC 3 cut(s) 764, 812, 1087
Tsp45I GTSAC 4 cut(s) 158, 220, 557, 1186
TspDTI ATGAA 4 cut(s) 470, 878, 1283, 1317
TspGWI ACGGA 3 cut(s) 43, 157, 592
TspRI CASTG 4 cut(s) 19, 562, 1195, 1233
Van91I CCANNNNNTGG 1 cut(s) 923
VpaK11BI GGWCC 2 cut(s) 600, 867
XagI CCTNNNNNAGG 2 cut(s) 727, 951
XceI RCATGY 2 cut(s) 764, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.