Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004340

Physical Location & Seq

Genomic Coordinates Reverse (-)

48099523 .. 48102995

Gene Structure 3473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCGCCTCGCTTACGGCCCCACCGCCGCCGCGCCCATGGCGTTTACCGACTTGGAGGGTCGGATTGCGGAGGTCGAAGCGTCGATGAAGGAGACTTCTAGGATGCTTCAGGTTGGGGTGGACATGGCGAGCCGGAAGATCGATAAGGAGGTCGGAGAGTTGAGGAAGGAGGTGGAGGACAGAGGGGTTGCTTTGGCCGGTGAATTGAGGAAATTGGAGGCGAAAAGCGAAGGGCTGGAGAGGTCTGTGGAGGAATTGAAGAGCGTGGAGTGGCTGTCCAAGCAAGAGTTTGAGGGGATTTACCAGGAGTTGAAGAAGGAAGGGAAGAGTGGTGAGTTGGGTGCGAGTTTTGATGATATAATGGCGTATGCCAGGAATGTGGTGGAGAAGGAGATAGAGAAGCATGCTGCGGATGGGCTTGCGAGGGTGGATTATGCATTGGGGAGTGGAGGTGCTGCGGTTGTGAAGCATTCGGAGCCGTATGTGGTGGGGAAAGGGAATTGGTGGACGAGTATGAGGAATGGGGTTCATAGTGATGCTGATAAGATGTTGAGACCGAGTCTTGGAGAGCCCGGGCAGTGTTTTCCATTGAAAGGGAGTAGTGGGTTTGTTCAGATTAAGCTTAGGACAGCAATTATTCCCGAGGCTATCACTCTGGAGCATGTTTCAAAGAGTGTTGCTTACGACATAACGAGTGCTCCCAAGGACTGTCGTATATCTGCATGGCTGCGAGGAGTGCATGATCAGGATTTAGAAGTCCATACAGAGAAGAGGTTTCTTTTGGCTGAGTTCACATATGACCTTGAGAAGAGCAATGCCCAGACAGTCACTGTGTTGGACTCAGCTGTGTCTAACATTGTTGACACAGTGAGGTTGGACTTCACATCCAATCATGGTAGCCCTTCACATACTTGCATATATCGTCTGCGAGTTCATGGACATGAACCCGAAGCTGTTTCTGTAATGGCCATGCACCAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005789 GO:0005819 GO:0005856 GO:0006996 GO:0006997 GO:0007049 GO:0007059 GO:0007127 GO:0008104 GO:0008150 GO:0008360 GO:0009524 GO:0009987 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031967 GO:0031975 GO:0031984 GO:0032878 GO:0033036 GO:0033365 GO:0034397 GO:0034398 GO:0034504 GO:0034613 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043495 GO:0043621 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044821 GO:0045132 GO:0045141 GO:0045143 GO:0048285 GO:0050000 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051276 GO:0051291 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065007 GO:0065008 GO:0070192 GO:0070197 GO:0070727 GO:0071840 GO:0090220 GO:0090435 GO:0097240 GO:0098813 GO:0098827 GO:0140013 GO:1903046 GO:2000769

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sad1_UNC

Protein Analysis

327

Amino Acids

36.06

Weight (kDa)

5.64

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sad1_UNC	PF07738	178 - 314	2.4e-35	Sad1 / UNC-like C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10730 AT5G04990
fragaria_vesca	FvH4_7g04870
malus_domestica	MD02G1266700.v1.1 MD07G1053000.v1.1
prunus_persica	Prupe.2G056900_v2.0.a1
pyrus_communis	pycom02g22820 pycom07g04100
rosa_chinensis	RchiOBHm_Chr1g0324281 RchiOBHm_Chr1g0330551
rosa_laevigata	RLG00000029806 RLG00000030209
rosa_multiflora	Rmu_co8045364.1_g000001 Rmu_co8316659.1_g000001 Rmu_co8464795.1_g000001 Rmu_sc0001850.1_g000044 Rmu_sc0002365.1_g000026 Rmu_sc0007290.1_g000001 Rmu_sc0037448.1_g000001
rosa_roxburghii	Rroxscaffold_159G00432660 Rroxscaffold_4G00319920
rosa_rugosa	Rorug01G0089200 Rorug02G0533700
rosa_samantha	Rh1AG060500 Rh1AG107300 Rh1BG086100 Rh1CG103200 Rh1DG067200 Rh1DG112900
rosa_wichuraiana	Rw1G005160 Rw1G008530 Rw1G008910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	6 cut(s)	24, 27, 30, 68, 410, 458
AcoI	YGGCCR	2 cut(s)	195, 966
AcuI	CTGAAG	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	563, 593
AgsI	TTSAA	4 cut(s)	259, 313, 592, 669
AjnI	CCWGG	2 cut(s)	303, 371
AluBI	AGCT	3 cut(s)	622, 845, 953
AluI	AGCT	3 cut(s)	622, 845, 953
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	2 cut(s)	86, 547
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	2 cut(s)	572, 641
AoxI	GGCC	3 cut(s)	16, 195, 966
ApeKI	GCWGC	3 cut(s)	407, 455, 727
AspLEI	GCGC	2 cut(s)	6, 34
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	2 cut(s)	573, 574
AsuHPI	GGTGA	2 cut(s)	212, 344
AvaI	CYCGRG	2 cut(s)	572, 641
BalI	TGGCCA	1 cut(s)	968
BanII	GRGCYC	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	3 cut(s)	394, 442, 714
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	2 cut(s)	31, 463
BciT130I	CCWGG	2 cut(s)	305, 373
BclI	TGATCA	1 cut(s)	742
BcnI	CCSGG	2 cut(s)	573, 574
BcoDI	GTCTC	2 cut(s)	86, 547
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	5 cut(s)	27, 30, 408, 456, 728
BlsI	GCNGC	5 cut(s)	28, 31, 409, 457, 729
Bme1390I	CCNGG	4 cut(s)	305, 373, 573, 574
BmeT110I	CYCGRG	2 cut(s)	572, 641
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	19, 477
BmrFI	CCNGG	4 cut(s)	305, 373, 573, 574
BmsI	GCATC	2 cut(s)	93, 526
BpmI	CTGGAG	2 cut(s)	257, 677
Bpu10I	CCTNAGC	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	2 cut(s)	573, 574
Bsa29I	ATCGAT	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	4 cut(s)	36, 572, 642, 702
BsaXI	ACNNNNNCTCC	6 cut(s)	260, 290, 436, 466, 682, 712
Bsc4I	CCNNNNNNNGG	2 cut(s)	563, 593
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	976
Bse3DI	GCAATG	1 cut(s)	820
BseBI	CCWGG	2 cut(s)	305, 373
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	4 cut(s)	36, 572, 642, 702
BseGI	GGATG	3 cut(s)	108, 418, 884
BseLI	CCNNNNNNNGG	2 cut(s)	563, 593
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	2 cut(s)	777, 855
BseNI	ACTGG	1 cut(s)	976
BseRI	GAGGAG	1 cut(s)	747
BseXI	GCAGC	3 cut(s)	394, 442, 714
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	18, 197, 968
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	700
BsiHKCI	CYCGRG	2 cut(s)	572, 641
BsiSI	CCGG	3 cut(s)	133, 198, 573
BslI	CCNNNNNNNGG	2 cut(s)	563, 593
BsmAI	GTCTC	2 cut(s)	86, 547
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	3 cut(s)	18, 197, 968
Bso31I	GGTCTC	1 cut(s)	547
BsoBI	CYCGRG	2 cut(s)	572, 641
Bsp1286I	GDGCHC	2 cut(s)	573, 700
Bsp143I	GATC	2 cut(s)	138, 742
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	6 cut(s)	24, 27, 30, 68, 410, 458
BspANI	GGCC	3 cut(s)	18, 197, 968
BspCNI	CTCAG	2 cut(s)	778, 854
BspDI	ATCGAT	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	19, 477
BspQI	GCTCTTC	2 cut(s)	254, 803
BspTNI	GGTCTC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	820
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	976
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	4 cut(s)	36, 572, 642, 702
BssMI	GATC	2 cut(s)	138, 742
BssT1I	CCWWGG	2 cut(s)	36, 702
Bst2UI	CCWGG	2 cut(s)	305, 373
Bst4CI	ACNGT	4 cut(s)	710, 826, 832, 868
Bst6I	CTCTTC	4 cut(s)	254, 320, 764, 803
BstC8I	GCNNGC	3 cut(s)	130, 405, 420
BstDEI	CTNAG	3 cut(s)	623, 786, 841
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	108, 418, 884
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	6, 34
BstKTI	GATC	2 cut(s)	141, 745
BstMAI	GTCTC	2 cut(s)	86, 547
BstMBI	GATC	2 cut(s)	138, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 280, 475, 736
BstNI	CCWGG	2 cut(s)	305, 373
BstNSI	RCATGY	2 cut(s)	407, 665
BstSCI	CCNGG	4 cut(s)	303, 371, 571, 572
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	394, 442, 714
BstXI	CCANNNNNNTGG	1 cut(s)	379
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	18, 197, 968
BsuTUI	ATCGAT	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	108, 418, 884
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	3 cut(s)	584, 828, 873
Cac8I	GCNNGC	3 cut(s)	130, 405, 420
CaiI	CAGNNNCTG	1 cut(s)	830
CfoI	GCGC	2 cut(s)	6, 34
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	17
Cfr9I	CCCGGG	1 cut(s)	572
ClaI	ATCGAT	1 cut(s)	141
CseI	GACGC	1 cut(s)	69
DdeI	CTNAG	3 cut(s)	623, 786, 841
DpnI	GATC	2 cut(s)	140, 744
DpnII	GATC	2 cut(s)	138, 742
EaeI	YGGCCR	2 cut(s)	195, 966
Eam1104I	CTCTTC	4 cut(s)	254, 320, 764, 803
EarI	CTCTTC	4 cut(s)	254, 320, 764, 803
Eco130I	CCWWGG	2 cut(s)	36, 702
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	547
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	2 cut(s)	572, 641
EcoRII	CCWGG	2 cut(s)	303, 371
EcoT14I	CCWWGG	2 cut(s)	36, 702
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	2 cut(s)	36, 702
FauNDI	CATATG	1 cut(s)	796
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	5 cut(s)	27, 30, 408, 456, 728
FokI	GGATG	3 cut(s)	115, 425, 871
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	5 cut(s)	27, 30, 408, 456, 728
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	2 cut(s)	5, 33
GluI	GCNGC	5 cut(s)	27, 30, 408, 456, 728
GsuI	CTGGAG	2 cut(s)	257, 677
HaeIII	GGCC	3 cut(s)	18, 197, 968
HapII	CCGG	3 cut(s)	133, 198, 573
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	2 cut(s)	6, 34
Hin6I	GCGC	2 cut(s)	4, 32
HinP1I	GCGC	2 cut(s)	4, 32
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	2 cut(s)	559, 839
HpaII	CCGG	3 cut(s)	133, 198, 573
HphI	GGTGA	2 cut(s)	212, 344
Hpy166II	GTNNAC	5 cut(s)	45, 121, 507, 792, 862
Hpy188I	TCNGA	4 cut(s)	63, 155, 475, 615
Hpy188III	TCNNGA	3 cut(s)	641, 656, 746
Hpy8I	GTNNAC	5 cut(s)	45, 121, 507, 792, 862
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	7 cut(s)	82, 160, 224, 310, 314, 382, 912
HpyCH4III	ACNGT	4 cut(s)	710, 826, 832, 868
HpyCH4V	TGCA	5 cut(s)	437, 722, 739, 915, 973
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 280, 475, 736
HpyF3I	CTNAG	3 cut(s)	623, 786, 841
HspAI	GCGC	2 cut(s)	4, 32
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	2 cut(s)	138, 742
LguI	GCTCTTC	2 cut(s)	254, 803
LmnI	GCTCC	3 cut(s)	475, 658, 703
Lsp1109I	GCAGC	3 cut(s)	394, 442, 714
LweI	GCATC	2 cut(s)	93, 526
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	826
MalI	GATC	2 cut(s)	140, 744
MboI	GATC	2 cut(s)	138, 742
MboII	GAAGA	6 cut(s)	148, 271, 325, 337, 781, 820
MhlI	GDGCHC	2 cut(s)	573, 700
MlsI	TGGCCA	1 cut(s)	968
MluCI	AATT	5 cut(s)	203, 212, 254, 499, 633
MluNI	TGGCCA	1 cut(s)	968
MlyI	GAGTC	2 cut(s)	568, 833
MmeI	TCCRAC	4 cut(s)	41, 133, 816, 855
Mox20I	TGGCCA	1 cut(s)	968
Mph1103I	ATGCAT	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	968
MseI	TTAA	2 cut(s)	618, 982
MslI	CAYNNNNRTG	2 cut(s)	534, 939
Msp20I	TGGCCA	1 cut(s)	968
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	3 cut(s)	133, 198, 573
MspR9I	CCNGG	4 cut(s)	305, 373, 573, 574
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	2 cut(s)	305, 373
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	4 cut(s)	38, 280, 475, 736
NciI	CCSGG	2 cut(s)	573, 574
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	2 cut(s)	138, 742
NlaIV	GGNNCC	2 cut(s)	19, 477
NmuCI	GTSAC	1 cut(s)	826
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	2 cut(s)	407, 665
PaeI	GCATGC	1 cut(s)	407
PciSI	GCTCTTC	2 cut(s)	254, 803
PctI	GAATGC	1 cut(s)	469
PflFI	GACNNNGTC	1 cut(s)	558
PkrI	GCNGC	5 cut(s)	28, 31, 409, 457, 729
PleI	GAGTC	2 cut(s)	567, 833
PpsI	GAGTC	2 cut(s)	567, 833
Psp6I	CCWGG	2 cut(s)	303, 371
PspGI	CCWGG	2 cut(s)	303, 371
PspN4I	GGNNCC	2 cut(s)	19, 477
PspPI	GGNCC	1 cut(s)	17
PstNI	CAGNNNCTG	1 cut(s)	830
PsyI	GACNNNGTC	1 cut(s)	558
PvuII	CAGCTG	1 cut(s)	845
RseI	CAYNNNNRTG	2 cut(s)	534, 939
SapI	GCTCTTC	2 cut(s)	254, 803
SaqAI	TTAA	2 cut(s)	618, 982
SatI	GCNGC	5 cut(s)	27, 30, 408, 456, 728
Sau3AI	GATC	2 cut(s)	138, 742
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	2 cut(s)	568, 833
ScrFI	CCNGG	4 cut(s)	305, 373, 573, 574
SduI	GDGCHC	2 cut(s)	573, 700
SfaNI	GCATC	2 cut(s)	93, 526
SmaI	CCCGGG	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	534, 939
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SphI	GCATGC	1 cut(s)	407
SrfI	GCCCGGGC	1 cut(s)	574
Sse9I	AATT	5 cut(s)	203, 212, 254, 499, 633
SsiI	CCGC	6 cut(s)	24, 27, 30, 68, 410, 458
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	4 cut(s)	303, 371, 571, 572
StyI	CCWWGG	2 cut(s)	36, 702
TaaI	ACNGT	4 cut(s)	710, 826, 832, 868
TaqI	TCGA	3 cut(s)	75, 83, 141
TaqII	GACCGA	1 cut(s)	571
TasI	AATT	5 cut(s)	203, 212, 254, 499, 633
TauI	GCSGC	2 cut(s)	29, 32
Tru1I	TTAA	2 cut(s)	618, 982
Tru9I	TTAA	2 cut(s)	618, 982
TscAI	CASTG	3 cut(s)	584, 835, 873
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	3 cut(s)	407, 455, 727
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	4 cut(s)	101, 518, 923, 957
TspMI	CCCGGG	1 cut(s)	572
TspRI	CASTG	3 cut(s)	584, 835, 873
Tth111I	GACNNNGTC	1 cut(s)	558
XceI	RCATGY	2 cut(s)	407, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmaI	CCCGGG	1 cut(s)	572
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.