AT3G13790

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
4532762 .. 4535914
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13790.3

Sequence Viewer

Length: 1755 bp
ATGACCAAAGAAGTTTGCTCCAACATTGGACTTTGGTTATTGCTCACGTTACTTATTGGTAACTATGTCGTCAATCTTGAAGCCTCGCACCATGTCTACAAGAGACTTACCCAAAGCACTAACACCAAATCTCCTTCCGTAAACCAGCCCTACCGGACCGGTTTCCATTTCCAACCCCCCAAAAATTGGATGAACGATCCTAATGGGCCTATGATATACAAAGGAATATATCATCTTTTCTACCAATGGAACCCGAAAGGAGCCGTGTGGGGTAACATCGTGTGGGCTCATTCCACGTCAACAGACTTAATCAATTGGGATCCACATCCTCCAGCTATCTTCCCATCTGCACCCTTCGATATCAACGGATGCTGGTCCGGTTCAGCTACTATTCTCCCTAATGGAAAACCGGTTATCCTCTATACCGGAATCGACCCTAAGAACCAACAGGTCCAAAACATAGCCGAGCCTAAGAATCTCTCCGATCCTTATCTCCGAGAATGGAAAAAGTCGCCGTTAAATCCTCTCATGGCTCCTGACGCCGTTAACGGAATCAACGCCAGCTCGTTCCGTGACCCAACCACCGCGTGGCTAGGCCAAGACAAGAAATGGAGAGTGATCATCGGAAGCAAGATTCACCGTCGTGGACTAGCCATTACTTACACGAGTAAAGACTTTCTAAAATGGGAAAAATCTCCAGAGCCGTTGCATTACGACGACGGAAGTGGAATGTGGGAATGTCCTGATTTTTTCCCGGTCACGAGGTTTGGTTCTAACGGCGTGGAAACGTCTTCGTTTGGTGAACCTAATGAGATTTTGAAGCACGTGTTGAAAATAAGTTTGGACGACACGAAACATGATTATTACACGATTGGTACGTACGATCGGGTTAAAGATAAATTCGTACCGGACAATGGTTTCAAGATGGACGGTACGGCTCCGAGATACGATTACGGAAAGTATTACGCGTCTAAAACGTTTTTTGACTCGGCTAAGAACCGGAGAATCTTGTGGGGTTGGACTAACGAGTCATCGTCGGTTGAGGATGATGTTGAGAAAGGCTGGTCCGGTATTCAGACGATTCCAAGGAAAATATGGCTTGATAGATCAGGGAAACAATTAATTCAGTGGCCGGTTAGGGAAGTTGAAAGATTACGTACAAAACAAGTCAAAAACTTACGCAACAAAGTTCTAAAGTCAGGATCTAGGCTTGAAGTCTATGGTGTGACAGCTGCACAGGCGGATGTAGAAGTATTGTTCAAAGTGAGAGACTTGGAGAAAGCGGATGTGATAGAACCAAGTTGGACTGATCCGCAGTTGATTTGTAGCAAGATGAATGTATCGGTTAAGTCTGGTTTAGGTCCATTCGGTTTAATGGTTTTGGCATCTAAGAATTTGGAAGAGTACACATCTGTTTATTTTAGAATCTTCAAAGCCCGTCAAAACAGCAATAAGTACGTTGTGCTCATGTGCAGTGACCAAAGCAGATCTTCGCTGAAGGAAGATAATGACAAAACGACATACGGAGCTTTTGTGGATATTAATCCTCACCAACCACTATCCCTCAGAGCCTTGATTGATCATTCAGTAGTGGAGAGTTTCGGTGGAAAGGGAAGAGCATGCATTACCTCAAGAGTGTATCCAAAATTGGCAATAGGAAAAAGTTCACATCTCTTTGCTTTTAATTATGGATATCAAAGTGTTGATGTCTTAAACTTAAATGCTTGGAGCATGAACTCTGCCCAAATCAGTTGA

Protein Analysis

584

Amino Acids

66.28

Weight (kDa)

9.14

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 1 - 308 3.1e-96 Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C PF08244 311 - 507 3.7e-26 Glycosyl hydrolases family 32 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1027
AccB7I CCANNNNNTGG 2 cut(s) 186, 588
AccI GTMKAC 1 cut(s) 96
AccII CGCG 2 cut(s) 587, 968
AciI CCGC 4 cut(s) 585, 1241, 1283, 1313
AclI AACGTT 1 cut(s) 977
AclWI GGATC 6 cut(s) 191, 314, 327, 479, 1210, 1304
AcoI YGGCCR 1 cut(s) 1130
AcsI RAATTY 2 cut(s) 899, 1393
AcuI CTGAAG 1 cut(s) 1517
AcvI CACGTG 1 cut(s) 826
AcyI GRCGYC 1 cut(s) 540
AdeI CACNNNGTG 1 cut(s) 588
AfaI GTAC 7 cut(s) 877, 881, 906, 934, 1159, 1406, 1457
AfiI CCNNNNNNNGG 3 cut(s) 186, 588, 914
AflIII ACRYGT 2 cut(s) 825, 966
AgeI ACCGGT 2 cut(s) 158, 409
AgsI TTSAA 8 cut(s) 80, 820, 832, 922, 1148, 1214, 1261, 1432
AjiI CACGTC 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AleI CACNNNNGTG 1 cut(s) 642
AluBI AGCT 5 cut(s) 335, 386, 564, 1232, 1529
AluI AGCT 5 cut(s) 335, 386, 564, 1232, 1529
Alw21I GWGCWC 1 cut(s) 1467
Alw26I GTCTC 2 cut(s) 97, 1263
AlwI GGATC 6 cut(s) 191, 314, 327, 479, 1210, 1304
AoxI GGCC 3 cut(s) 206, 595, 1130
ApeKI GCWGC 1 cut(s) 1232
ApoI RAATTY 2 cut(s) 899, 1393
AseI ATTAAT 2 cut(s) 1121, 1542
AsiGI ACCGGT 2 cut(s) 158, 409
Asp700I GAANNNNTTC 1 cut(s) 1663
AspS9I GGNCC 6 cut(s) 156, 206, 375, 451, 1065, 1361
AsuC2I CCSGG 1 cut(s) 755
AsuHPI GGTGA 3 cut(s) 629, 812, 1541
AvaII GGWCC 5 cut(s) 156, 375, 451, 1065, 1361
BamHI GGATCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 289
BauI CACGAG 2 cut(s) 664, 760
BbrPI CACGTG 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 1 cut(s) 1467
BbvI GCAGC 1 cut(s) 1219
BccI CCATC 2 cut(s) 352, 919
BceAI ACGGC 6 cut(s) 248, 499, 527, 688, 793, 951
BciVI GTATCC 1 cut(s) 1650
BclI TGATCA 2 cut(s) 618, 1579
BcnI CCSGG 1 cut(s) 755
BcoDI GTCTC 2 cut(s) 97, 1263
BfaI CTAG 3 cut(s) 593, 650, 1206
BfuI GTATCC 1 cut(s) 1650
BglII AGATCT 1 cut(s) 1487
BisI GCNGC 1 cut(s) 1233
BlsI GCNGC 1 cut(s) 1234
Bme1390I CCNGG 1 cut(s) 755
Bme18I GGWCC 5 cut(s) 156, 375, 451, 1065, 1361
BmgBI CACGTC 1 cut(s) 297
BmgT120I GGNCC 6 cut(s) 156, 206, 375, 451, 1065, 1361
BmiI GGNNCC 5 cut(s) 251, 262, 321, 534, 939
BmrFI CCNGG 1 cut(s) 755
BmsI GCATC 2 cut(s) 359, 1394
BpiI GAAGAC 1 cut(s) 783
BpmI CTGGAG 2 cut(s) 315, 681
BpuEI CTTGAG 1 cut(s) 1615
BpuMI CCSGG 1 cut(s) 755
BsaAI YACGTR 3 cut(s) 826, 879, 1157
BsaBI GATNNNNATC 3 cut(s) 324, 489, 1542
BsaHI GRCGYC 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 1085
BsaWI WCCGGW 8 cut(s) 153, 158, 377, 409, 425, 907, 999, 1067
BsaXI ACNNNNNCTCC 4 cut(s) 115, 145, 1518, 1548
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 588, 914
Bse118I RCCGGY 3 cut(s) 158, 409, 1132
Bse8I GATNNNNATC 3 cut(s) 324, 489, 1542
BseDI CCNNGG 1 cut(s) 1085
BseGI GGATG 6 cut(s) 195, 325, 374, 1051, 1249, 1291
BseJI GATNNNNATC 3 cut(s) 324, 489, 1542
BseLI CCNNNNNNNGG 3 cut(s) 186, 588, 914
BseMII CTCAG 1 cut(s) 1579
BseXI GCAGC 1 cut(s) 1219
BsgI GTGCAG 3 cut(s) 333, 1218, 1492
Bsh1236I CGCG 2 cut(s) 587, 968
Bsh1285I CGRYCG 1 cut(s) 886
BshFI GGCC 3 cut(s) 208, 597, 1132
BshTI ACCGGT 2 cut(s) 158, 409
BsiEI CGRYCG 1 cut(s) 886
BsiHKAI GWGCWC 1 cut(s) 1467
BsiWI CGTACG 1 cut(s) 879
BslI CCNNNNNNNGG 3 cut(s) 186, 588, 914
BsmAI GTCTC 2 cut(s) 97, 1263
BsnI GGCC 3 cut(s) 208, 597, 1132
Bsp1286I GDGCHC 2 cut(s) 289, 1467
BspACI CCGC 4 cut(s) 585, 1241, 1283, 1313
BspANI GGCC 3 cut(s) 208, 597, 1132
BspCNI CTCAG 1 cut(s) 1578
BspFNI CGCG 2 cut(s) 587, 968
BspLI GGNNCC 5 cut(s) 251, 262, 321, 534, 939
BspPI GGATC 6 cut(s) 191, 314, 327, 479, 1210, 1304
BspQI GCTCTTC 1 cut(s) 1609
BsrFI RCCGGY 3 cut(s) 158, 409, 1132
BssAI RCCGGY 3 cut(s) 158, 409, 1132
BssECI CCNNGG 1 cut(s) 1085
BssNI GRCGYC 1 cut(s) 540
BssSI CACGAG 2 cut(s) 664, 760
BssT1I CCWWGG 1 cut(s) 1085
Bst2BI CACGAG 2 cut(s) 664, 760
Bst4CI ACNGT 2 cut(s) 641, 932
Bst6I CTCTTC 2 cut(s) 1395, 1609
BstACI GRCGYC 1 cut(s) 540
BstBAI YACGTR 3 cut(s) 826, 879, 1157
BstC8I GCNNGC 2 cut(s) 562, 1621
BstDEI CTNAG 5 cut(s) 438, 471, 993, 1389, 1565
BstF5I GGATG 6 cut(s) 195, 325, 374, 1051, 1249, 1291
BstFNI CGCG 2 cut(s) 587, 968
BstMAI GTCTC 2 cut(s) 97, 1263
BstMCI CGRYCG 1 cut(s) 886
BstMWI GCNNNNNNNGC 2 cut(s) 539, 1238
BstNSI RCATGY 1 cut(s) 1623
BstSCI CCNGG 1 cut(s) 753
BstSNI TACGTA 2 cut(s) 879, 1157
BstUI CGCG 2 cut(s) 587, 968
BstV1I GCAGC 1 cut(s) 1219
BstV2I GAAGAC 1 cut(s) 783
BstX2I RGATCY 3 cut(s) 319, 1202, 1487
BstYI RGATCY 3 cut(s) 319, 1202, 1487
BsuI GTATCC 1 cut(s) 1650
BsuRI GGCC 3 cut(s) 208, 597, 1132
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 6 cut(s) 195, 325, 374, 1051, 1249, 1291
BtsI GCAGTG 1 cut(s) 1480
BtsIMutI CAGTG 2 cut(s) 1133, 1480
Cac8I GCNNGC 2 cut(s) 562, 1621
Cfr10I RCCGGY 3 cut(s) 158, 409, 1132
Cfr13I GGNCC 6 cut(s) 156, 206, 375, 451, 1065, 1361
CpoI CGGWCCG 1 cut(s) 156
CseI GACGC 2 cut(s) 548, 957
Csp6I GTAC 7 cut(s) 876, 880, 905, 933, 1158, 1405, 1456
CspAI ACCGGT 2 cut(s) 158, 409
CspI CGGWCCG 1 cut(s) 156
CviAII CATG 6 cut(s) 92, 529, 857, 1468, 1620, 1732
CviQI GTAC 7 cut(s) 876, 880, 905, 933, 1158, 1405, 1456
DdeI CTNAG 5 cut(s) 438, 471, 993, 1389, 1565
DraIII CACNNNGTG 1 cut(s) 588
DrdI GACNNNNNNGTC 1 cut(s) 1027
DseDI GACNNNNNNGTC 1 cut(s) 1027
EaeI YGGCCR 1 cut(s) 1130
Eam1104I CTCTTC 2 cut(s) 1395, 1609
EarI CTCTTC 2 cut(s) 1395, 1609
EciI GGCGGA 1 cut(s) 1256
Eco105I TACGTA 2 cut(s) 879, 1157
Eco130I CCWWGG 1 cut(s) 1085
Eco24I GRGCYC 1 cut(s) 289
Eco32I GATATC 2 cut(s) 361, 1694
Eco47I GGWCC 5 cut(s) 156, 375, 451, 1065, 1361
Eco57I CTGAAG 1 cut(s) 1517
Eco72I CACGTG 1 cut(s) 826
EcoRV GATATC 2 cut(s) 361, 1694
EcoT14I CCWWGG 1 cut(s) 1085
EcoT22I ATGCAT 1 cut(s) 1625
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 1085
FaeI CATG 6 cut(s) 95, 532, 860, 1471, 1623, 1735
FalI AAGNNNNNCTT 2 cut(s) 1474, 1506
FatI CATG 6 cut(s) 91, 528, 856, 1467, 1619, 1731
FbaI TGATCA 2 cut(s) 618, 1579
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 1233
FokI GGATG 6 cut(s) 202, 312, 381, 1058, 1256, 1298
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 1233
FspBI CTAG 3 cut(s) 593, 650, 1206
GluI GCNGC 1 cut(s) 1233
GsuI CTGGAG 2 cut(s) 315, 681
HaeIII GGCC 3 cut(s) 208, 597, 1132
HgaI GACGC 2 cut(s) 548, 957
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 6 cut(s) 95, 532, 860, 1471, 1623, 1735
HincII GTYRAC 2 cut(s) 300, 547
HindII GTYRAC 2 cut(s) 300, 547
HinfI GANTC 9 cut(s) 429, 475, 552, 634, 986, 1005, 1028, 1081, 1425
HpaI GTTAAC 1 cut(s) 547
HphI GGTGA 3 cut(s) 629, 812, 1541
Hpy166II GTNNAC 8 cut(s) 97, 142, 300, 547, 647, 803, 1407, 1667
Hpy188I TCNGA 6 cut(s) 484, 497, 626, 942, 1077, 1568
Hpy188III TCNNGA 8 cut(s) 77, 536, 698, 743, 760, 922, 1200, 1632
Hpy8I GTNNAC 8 cut(s) 97, 142, 300, 547, 647, 803, 1407, 1667
Hpy99I CGWCG 4 cut(s) 645, 719, 722, 1039
HpyAV CCTTC 3 cut(s) 144, 364, 1492
HpyCH4III ACNGT 2 cut(s) 641, 932
HpyCH4IV ACGT 8 cut(s) 47, 296, 788, 825, 878, 977, 1156, 1458
HpyCH4V TGCA 5 cut(s) 350, 709, 1235, 1473, 1623
HpyF10VI GCNNNNNNNGC 2 cut(s) 539, 1238
HpyF3I CTNAG 5 cut(s) 438, 471, 993, 1389, 1565
HpySE526I ACGT 8 cut(s) 47, 296, 788, 825, 878, 977, 1156, 1458
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 6 cut(s) 95, 532, 860, 1471, 1623, 1735
Ksp22I TGATCA 2 cut(s) 618, 1579
KspAI GTTAAC 1 cut(s) 547
LguI GCTCTTC 1 cut(s) 1609
LmnI GCTCC 6 cut(s) 23, 260, 538, 943, 1526, 1728
Lsp1109I GCAGC 1 cut(s) 1219
LweI GCATC 2 cut(s) 359, 1394
MaeI CTAG 3 cut(s) 593, 650, 1206
MaeII ACGT 8 cut(s) 47, 296, 788, 825, 878, 977, 1156, 1458
MaeIII GTNAC 7 cut(s) 48, 59, 272, 572, 757, 1225, 1475
MboII GAAGA 7 cut(s) 331, 783, 1412, 1420, 1482, 1514, 1626
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 3 cut(s) 319, 1202, 1487
MhlI GDGCHC 2 cut(s) 289, 1467
MluCI AATT 8 cut(s) 184, 313, 899, 1118, 1122, 1393, 1646, 1684
MluI ACGCGT 1 cut(s) 966
MlyI GAGTC 2 cut(s) 980, 1037
MmeI TCCRAC 4 cut(s) 45, 196, 998, 1283
MnlI CCTC 9 cut(s) 94, 339, 428, 534, 756, 1036, 1557, 1574, 1639
Mph1103I ATGCAT 1 cut(s) 1625
MroXI GAANNNNTTC 1 cut(s) 1663
MslI CAYNNNNRTG 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 1232
MspR9I CCNGG 1 cut(s) 755
MunI CAATTG 1 cut(s) 313
MvnI CGCG 2 cut(s) 587, 968
MwoI GCNNNNNNNGC 2 cut(s) 539, 1238
NciI CCSGG 1 cut(s) 755
NlaIII CATG 6 cut(s) 95, 532, 860, 1471, 1623, 1735
NlaIV GGNNCC 5 cut(s) 251, 262, 321, 534, 939
NmeAIII GCCGAG 2 cut(s) 490, 968
NmuCI GTSAC 4 cut(s) 572, 757, 1225, 1475
NsiI ATGCAT 1 cut(s) 1625
NspI RCATGY 1 cut(s) 1623
OliI CACNNNNGTG 1 cut(s) 642
PaeI GCATGC 1 cut(s) 1623
PciSI GCTCTTC 1 cut(s) 1609
PcsI WCGNNNNNNNCGW 1 cut(s) 875
PdmI GAANNNNTTC 1 cut(s) 1663
PfeI GAWTC 7 cut(s) 429, 475, 552, 634, 1005, 1081, 1425
Pfl23II CGTACG 1 cut(s) 879
PflMI CCANNNNNTGG 2 cut(s) 186, 588
PinAI ACCGGT 2 cut(s) 158, 409
PkrI GCNGC 1 cut(s) 1234
Ple19I CGATCG 1 cut(s) 886
PleI GAGTC 2 cut(s) 980, 1036
PmaCI CACGTG 1 cut(s) 826
PmlI CACGTG 1 cut(s) 826
PpsI GAGTC 2 cut(s) 980, 1036
Ppu21I YACGTR 3 cut(s) 826, 879, 1157
PshBI ATTAAT 2 cut(s) 1121, 1542
Psp1406I AACGTT 1 cut(s) 977
PspCI CACGTG 1 cut(s) 826
PspLI CGTACG 1 cut(s) 879
PspN4I GGNNCC 5 cut(s) 251, 262, 321, 534, 939
PspPI GGNCC 6 cut(s) 156, 206, 375, 451, 1065, 1361
PsuI RGATCY 3 cut(s) 319, 1202, 1487
PvuI CGATCG 1 cut(s) 886
PvuII CAGCTG 1 cut(s) 1232
RsaI GTAC 7 cut(s) 877, 881, 906, 934, 1159, 1406, 1457
RsaNI GTAC 7 cut(s) 876, 880, 905, 933, 1158, 1405, 1456
RseI CAYNNNNRTG 1 cut(s) 642
Rsr2I CGGWCCG 1 cut(s) 156
RsrII CGGWCCG 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 1609
SatI GCNGC 1 cut(s) 1233
Sau96I GGNCC 6 cut(s) 156, 206, 375, 451, 1065, 1361
SchI GAGTC 2 cut(s) 980, 1037
ScrFI CCNGG 1 cut(s) 755
SduI GDGCHC 2 cut(s) 289, 1467
SfaNI GCATC 2 cut(s) 359, 1394
SinI GGWCC 5 cut(s) 156, 375, 451, 1065, 1361
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 1 cut(s) 1630
SmoI CTYRAG 1 cut(s) 1630
SnaBI TACGTA 2 cut(s) 879, 1157
SphI GCATGC 1 cut(s) 1623
Sse9I AATT 8 cut(s) 184, 313, 899, 1118, 1122, 1393, 1646, 1684
SsiI CCGC 4 cut(s) 585, 1241, 1283, 1313
SspMI CTAG 3 cut(s) 593, 650, 1206
StyD4I CCNGG 1 cut(s) 753
StyI CCWWGG 1 cut(s) 1085
TaaI ACNGT 2 cut(s) 641, 932
TaiI ACGT 8 cut(s) 50, 299, 791, 828, 881, 980, 1159, 1461
TaqI TCGA 2 cut(s) 357, 432
TasI AATT 8 cut(s) 184, 313, 899, 1118, 1122, 1393, 1646, 1684
TatI WGTACW 1 cut(s) 1404
TfiI GAWTC 7 cut(s) 429, 475, 552, 634, 1005, 1081, 1425
TscAI CASTG 2 cut(s) 1133, 1480
TseFI GTSAC 4 cut(s) 572, 757, 1225, 1475
TseI GCWGC 1 cut(s) 1232
Tsp45I GTSAC 4 cut(s) 572, 757, 1225, 1475
TspDTI ATGAA 3 cut(s) 206, 1349, 1748
TspGWI ACGGA 7 cut(s) 127, 381, 560, 564, 735, 969, 1539
TspRI CASTG 2 cut(s) 1133, 1480
Van91I CCANNNNNTGG 2 cut(s) 186, 588
VpaK11BI GGWCC 5 cut(s) 156, 375, 451, 1065, 1361
VspI ATTAAT 2 cut(s) 1121, 1542
XapI RAATTY 2 cut(s) 899, 1393
XceI RCATGY 1 cut(s) 1623
XcmI CCANNNNNNNNNTGG 2 cut(s) 585, 1092
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 1663
XspI CTAG 3 cut(s) 593, 650, 1206
Zsp2I ATGCAT 1 cut(s) 1625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.