Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001901

Physical Location & Seq

Genomic Coordinates Reverse (-)

48809154 .. 48813969

Gene Structure 4816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0382700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3150 bp

ATGGATGCTTTGCAAGTCATTTCTTCTGCAACACAGATAGTTTCAAGCATGGTAGGTGCCATTGCTGCATTAGAGCAAGCATCTAGAAACTTAGATGAAGCTCCAAAGAGAATTCGAAGCCTAGAGGAATTTGTTTGTGATCTTGAGAACTTGATTCGACGACTAAAGCACAAGCATGTCAACAAACTTCATAATCCTCAGTTAGAACACCAAATCCAAAGCTTGAATTCCCTGATAGAACGTCTGCATCCAAACATCACCAAGGCCAGGAGAATGGTGTCAAAGAGTAAGATTAAGAACTTGGCTAAGGTAGTTTGGACTTCCATGGCTGGAGACCCACTGGGGAAGCTTGTGAACTCAATAAGGGATGACTTGAATTGGTGGCTTGAATCACAAAGATTGGTCCAGGATGTTGAGAAGACGCTTGAGTCAACTGCAAAAGACACCCGCGTTCGACTGAAAATTAGGACCGAACAAGGTTACCCAGTTTCTAGTAAATGCTACTTTGTCAGGAATTTACTGGAAAAGAATGGTTCTCAACGTGTCATTCTAATTGTTGGGTTATCTGGTATTGGGAAGTCATTTTTGGCTCGTCAAGTAGCTTCTGATCCCCCTGAGAAATTTATGGATGGTGCAGTTGAACTTGGCTTTGGCCAATGGTGCAGTAGATCTGCTTGCAACAGAAGTATAGCTGAATATCAGAGGCGCTTGGCAAGAAAACTTAGTAAATTTCTGGTGCAGATTGGATTTTGGAAGAAGATTAGGGATGAATATAGTGGAGATCTAGAATATATATGTTGCTTGCTTCAAGAAGCCTTGTATGGGAAGAGCATCCTTATACTTCTTGATGATGTTTGGGAGCAGGACATAGTTGAGCGGTTTGCAAAGCTATATGATAATGGTTGCAGGTACCTTGTAACAACAAGAAATGAAGCTGTCTATGAAATTACAGAAGCAGAGAAGGTGGAATTAAGCAAAGATGACGTAAAGGAGACAAGCATGGAAGTTCTTCTCTACCATAGCCTCCTTAGCAAAGAAGAGCTACCGCAGGTAGCAGAGAACTTACTCGAGCGCTGCGGTCACCATCCTTTGACAGTTGCTGTTATGGGTAAGGCTCTCAGAAAAGAAACAAGAGCTGATAAATGGGAAAAGGCCATCACCAACTTATCCACATTTGCTACATGTGCACCTGGTCCTGTATCATATGTCAACGAAAAAGAAGCTGAGAATGCTTTAACCATTTTTGGATCCTTTGAGTTCAGTCTAGATGCAATGCCTGGAGACTCTAGAGAGCTCTTCATAGCTTTGTCCGCTCTTGCATGGGCAGAACCTGTGCCAGAAGCTTGTGTTGAGGCTGTTTGGTCAGTTCTGGGCCAGGAGACCCTGTTCCCACTCATAGTCTGCAAGCTTGTAGAAGGCTCATTGCTGATGAAAATTGATACAGATCCCTTGTACTTGGTACATGACATGGTTGCTCTGTACCTTGACAGCAAGACAAACAATTCAGTCCAGATACTACTAAATACATCCACAGCCGAAGAAGCAGCATTCATCTGCCCTTGGCTTCTTATATTTGGGAAAGAGAGAGTAAAAGATATTGCCGAAAAGAGAATAGTGTCTTTCCTTGTTTCTTTTGAGGAAAAGCATGTGATTATCACCTTAAAGGCGACTATCCAGGCTCTAATGGCTAGCAAGTCCATATCAGAACTTGAAGAAAGTAGAGCAAACTTTAGTAGCTTATTGGGTCCTAGGACTGCAGACCTGATCTCCACTGAATCACAGAGCTTGATTGCTGTGTCTGCACAAGCCATCACCACTGTATTTAGCAAGAGTGACTATTGCAATTATTTTCCATCCCTTGAATATACTGGTGCAGTCAGCAAGTTGGCTTGCATCTTAGAAAATTGTGATGAGTCTGATGACCCTGTGATCCAAACAGATATTTCAGTTGTTCTTGCAAAGCTTGCAGAATTTGGAAGCCAAGAGACGGTCGATAAGGTGCTTCAGAGCATTCAATTTCATCAGTTGGCAGAGTTGCTCTCTCCAAATAATGAGCAATGGCATGATAGTGTATTTTCAATACTGATCTCATTGATGAAAGCTGGGAAATCAAAAGCTGTGGAGAGAATGCTTGCTTTTGAGATTGATAAGACTCTTCTTAGACTCCTACAGAATGGATCCGAAGTAGCTCAACACCATGCAATAGTTGCATTGAAGACATTTTATGAGTTGAGAGGCCCCCATCTGGTTGGATCTCTTGAATCCAAAAATATAAACCTTTTGCCATGGCAAGCTAGACACTGTTTGGAGAGATTTCTTTTGTTGGATCAAAGTGTTCCCCTTTTACCACAGCTGCAAACTTTTGAAGATCTTATTTATAAGGTACTACACAGTGATAGCAAGCTGGTATTGGAGGCAATGCAAGATCTAATACCAATCATTGAGAATGCAGGAGAACCAAGCATCAGAGACATGATTGTAGAAAGTCCCCTCATCAAACAACTCTCTGAACTCTTGCAACGTGGAAGCTCTGAACATAATTCAATGAAATCTCAAGCTGCCTTTCTATTGATGAAGCTAGCTTCCTCTGGTGGAGAATCCTGCATTAAGAAGTTTCTTGAGTACGATATTATACCCGATCTAGTTAAGATGATGCAGTGCAGCACTACAGAGTTGCAGGATGCAGCCTATACAGCACTACACCAAATGCTTTTTGGAAGCAGCGGCGTTCTCGTTTTGAACCAAATCCTCCAGATGGGTCTCATAGAGAGGATGGCTCAGTCACTGGAAAGCAAATCAACGAAGACCAGGGAAGTGAATGTGCACTGTTTTCTGGATATTGTGGAGCTCGGAAACAAAGCCTGTATCGAGCAAATGTTTTCACTGCAAGTGGTGGAGAAGCTTGTGAAAATAGAAAAGGCGAGTGGGGGAACTAGTGAAACACTGCTTGGATTCATAAAGGGAATTGATAAATGTAAGCATCTATCTTCGGCAGAGCGTAGAGTGATGAAACAACAAGTGGTTAGGAAGATAAGGGCTTCCCTTAAAGGCCATAAATTTGAGTTTCAAATTTTGGGAGCTGTTGATGCTTGTGTATCTGAGGGCTCAAAAGTAGGTAGTAGCAGTAGAGGTAATCACAAAAGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

1049

Amino Acids

117.48

Weight (kDa)

6.16

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	172 - 321	7.5e-15	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13790 AT3G13790 AT3G13790 AT3G13790 AT3G13790
fragaria_vesca	FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33602 FvH4_6g33602 FvH4_6g33602
malus_domestica	MD09G1192100.v1.1
prunus_persica	Prupe.3G009500_v2.0.a1 Prupe.3G048300_v2.0.a1 Prupe.3G048300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143501 RchiOBHm_Chr2g0143521
rosa_laevigata	RLG00000020041 RLG00000020043
rosa_multiflora	Rmu_sc0003507.1_g000032 Rmu_sc0005083.1_g000003 Rmu_sc0005083.1_g000014 Rmu_sc0015791.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101770 Rroxscaffold_2G00101800
rosa_rugosa	Rorug02G0382100 Rorug02G0382200 Rorug02G0382200 Rorug02G0382300 Rorug02G0382300 Rorug02G0382600 Rorug02G0382700 Rorug02G0382700 Rorug02G0383000 Rorug02G0383000 Rorug02G0383100
rosa_samantha	Rh2AG435000 Rh2AG435300 Rh2BG442700 Rh2BG442900 Rh2CG421000 Rh2CG421400 Rh2DG452900 Rh2DG453300
rosa_wichuraiana	Rw2G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2379
AasI	GACNNNNNNGTC	1 cut(s)	427
Acc36I	ACCTGC	2 cut(s)	897, 1039
Acc65I	GGTACC	1 cut(s)	909
AccB1I	GGYRCC	2 cut(s)	56, 909
AccBSI	CCGCTC	2 cut(s)	877, 1313
AccII	CGCG	1 cut(s)	450
AciI	CCGC	6 cut(s)	448, 877, 1046, 1077, 1311, 2724
AclWI	GGATC	9 cut(s)	602, 1242, 1255, 1439, 1924, 2172, 2185, 2260, 2334
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	9 cut(s)	111, 128, 226, 514, 620, 728, 1970, 3056, 3069
AcuI	CTGAAG	1 cut(s)	1988
AfaI	GTAC	6 cut(s)	911, 1454, 1461, 1481, 2385, 2624
AfeI	AGCGCT	1 cut(s)	1073
AfiI	CCNNNNNNNGG	5 cut(s)	267, 822, 1987, 2245, 2755
AflIII	ACRYGT	2 cut(s)	541, 1181
AhlI	ACTAGT	1 cut(s)	2933
AjnI	CCWGG	7 cut(s)	266, 405, 1189, 1276, 1374, 1674, 2807
AjuI	GAANNNNNNNTTGG	6 cut(s)	569, 601, 633, 665, 2931, 2963
AloI	GAACNNNNNNTCC	4 cut(s)	198, 230, 1370, 1402
Alw21I	GWGCWC	4 cut(s)	1189, 1296, 2826, 2850
Alw26I	GTCTC	7 cut(s)	327, 986, 1275, 1373, 1979, 2463, 2765
Alw44I	GTGCAC	2 cut(s)	1185, 2822
AlwI	GGATC	9 cut(s)	602, 1242, 1255, 1439, 1924, 2172, 2185, 2260, 2334
AlwNI	CAGNNNCTG	3 cut(s)	1100, 1331, 2785
Ama87I	CYCGRG	1 cut(s)	1067
Aor51HI	AGCGCT	1 cut(s)	1073
AoxI	GGCC	6 cut(s)	264, 652, 1152, 1372, 2236, 3049
ApaLI	GTGCAC	2 cut(s)	1185, 2822
ApeKI	GCWGC	8 cut(s)	65, 1074, 1544, 2353, 2558, 2661, 2684, 2721
ApoI	RAATTY	9 cut(s)	111, 128, 226, 514, 620, 728, 1970, 3056, 3069
Asp700I	GAANNNNTTC	1 cut(s)	1008
Asp718I	GGTACC	1 cut(s)	909
AspA2I	CCTAGG	1 cut(s)	1748
AspLEI	GCGC	2 cut(s)	708, 1074
AspS9I	GGNCC	6 cut(s)	403, 468, 1193, 1372, 1745, 2237
AsuHPI	GGTGA	5 cut(s)	250, 1073, 1150, 1648, 1804
AsuII	TTCGAA	1 cut(s)	115
AsuNHI	GCTAGC	2 cut(s)	1688, 2578
AvaI	CYCGRG	1 cut(s)	1067
AvaII	GGWCC	4 cut(s)	403, 468, 1193, 1745
AvrII	CCTAGG	1 cut(s)	1748
BaeGI	GKGCMC	2 cut(s)	1189, 2826
BalI	TGGCCA	1 cut(s)	654
BamHI	GGATCC	2 cut(s)	1247, 2177
BanI	GGYRCC	2 cut(s)	56, 909
BanII	GRGCYC	3 cut(s)	1296, 2850, 3107
BbsI	GAAGAC	3 cut(s)	425, 2222, 2810
Bbv12I	GWGCWC	4 cut(s)	1189, 1296, 2826, 2850
BbvI	GCAGC	8 cut(s)	52, 1061, 1556, 2340, 2545, 2673, 2696, 2733
BccI	CCATC	8 cut(s)	623, 1092, 1163, 1817, 1861, 2250, 2749, 2767
BciT130I	CCWGG	7 cut(s)	268, 407, 1191, 1278, 1376, 1676, 2809
BcoDI	GTCTC	7 cut(s)	327, 986, 1275, 1373, 1979, 2463, 2765
BcuI	ACTAGT	1 cut(s)	2933
BfmI	CTRYAG	3 cut(s)	1755, 2168, 2667
BfoI	RGCGCY	2 cut(s)	709, 1075
BfuAI	ACCTGC	2 cut(s)	897, 1039
BglII	AGATCT	4 cut(s)	668, 781, 2368, 2425
BisI	GCNGC	9 cut(s)	66, 1075, 1545, 2354, 2559, 2662, 2685, 2722, 2725
BlnI	CCTAGG	1 cut(s)	1748
BlsI	GCNGC	9 cut(s)	67, 1076, 1546, 2355, 2560, 2663, 2686, 2723, 2726
Bme1390I	CCNGG	7 cut(s)	268, 407, 1191, 1278, 1376, 1676, 2809
Bme18I	GGWCC	4 cut(s)	403, 468, 1193, 1745
BmeT110I	CYCGRG	1 cut(s)	1067
BmgT120I	GGNCC	6 cut(s)	403, 468, 1193, 1372, 1745, 2237
BmiI	GGNNCC	6 cut(s)	58, 911, 1249, 1746, 2179, 2239
BmrFI	CCNGG	7 cut(s)	268, 407, 1191, 1278, 1376, 1676, 2809
BmrI	ACTGGG	2 cut(s)	350, 479
BmtI	GCTAGC	2 cut(s)	1692, 2582
BmuI	ACTGGG	2 cut(s)	350, 479
BpiI	GAAGAC	3 cut(s)	425, 2222, 2810
BplI	GAGNNNNNCTC	4 cut(s)	2024, 2056, 2761, 2793
BpmI	CTGGAG	3 cut(s)	351, 1299, 2735
Bpu10I	CCTNAGC	2 cut(s)	306, 1028
Bpu14I	TTCGAA	1 cut(s)	115
BpuEI	CTTGAG	4 cut(s)	164, 446, 2538, 2639
BsaBI	GATNNNNATC	1 cut(s)	1443
BsaI	GGTCTC	3 cut(s)	327, 1373, 2765
BsaJI	CCNNGG	6 cut(s)	261, 324, 1559, 1748, 2285, 2808
BsaXI	ACNNNNNCTCC	4 cut(s)	1370, 1400, 1751, 1781
Bsc4I	CCNNNNNNNGG	5 cut(s)	267, 822, 1987, 2245, 2755
Bse1I	ACTGG	5 cut(s)	345, 485, 525, 1873, 2790
Bse3DI	GCAATG	5 cut(s)	60, 1278, 1421, 2063, 2424
Bse8I	GATNNNNATC	1 cut(s)	1443
BseBI	CCWGG	7 cut(s)	268, 407, 1191, 1278, 1376, 1676, 2809
BseDI	CCNNGG	6 cut(s)	261, 324, 1559, 1748, 2285, 2808
BseJI	GATNNNNATC	1 cut(s)	1443
BseLI	CCNNNNNNNGG	5 cut(s)	267, 822, 1987, 2245, 2755
BseMI	GCAATG	5 cut(s)	60, 1278, 1421, 2063, 2424
BseMII	CTCAG	6 cut(s)	212, 606, 1132, 1215, 2792, 3090
BseNI	ACTGG	5 cut(s)	345, 485, 525, 1873, 2790
BseSI	GKGCMC	2 cut(s)	1189, 2826
BseXI	GCAGC	8 cut(s)	52, 1061, 1556, 2340, 2545, 2673, 2696, 2733
BseYI	CCCAGC	1 cut(s)	2102
BsgI	GTGCAG	6 cut(s)	654, 682, 758, 1785, 1893, 2680
Bsh1236I	CGCG	1 cut(s)	450
Bsh1285I	CGRYCG	1 cut(s)	1992
BshFI	GGCC	6 cut(s)	266, 654, 1154, 1374, 2238, 3051
BshNI	GGYRCC	2 cut(s)	56, 909
BsiEI	CGRYCG	1 cut(s)	1992
BsiHKAI	GWGCWC	4 cut(s)	1189, 1296, 2826, 2850
BsiHKCI	CYCGRG	1 cut(s)	1067
BslFI	GGGAC	1 cut(s)	2472
BslI	CCNNNNNNNGG	5 cut(s)	267, 822, 1987, 2245, 2755
BsmAI	GTCTC	7 cut(s)	327, 986, 1275, 1373, 1979, 2463, 2765
BsmBI	CGTCTC	1 cut(s)	1979
BsmFI	GGGAC	1 cut(s)	2472
BsmI	GAATGC	5 cut(s)	1234, 1547, 2010, 2133, 2452
BsnI	GGCC	6 cut(s)	266, 654, 1154, 1374, 2238, 3051
Bso31I	GGTCTC	3 cut(s)	327, 1373, 2765
BsoBI	CYCGRG	1 cut(s)	1067
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	5 cut(s)	1189, 1296, 2826, 2850, 3107
Bsp19I	CCATGG	2 cut(s)	324, 2285
BspACI	CCGC	6 cut(s)	448, 877, 1046, 1077, 1311, 2724
BspANI	GGCC	6 cut(s)	266, 654, 1154, 1374, 2238, 3051
BspCNI	CTCAG	6 cut(s)	211, 607, 1131, 1216, 2791, 3091
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	6 cut(s)	58, 911, 1249, 1746, 2179, 2239
BspMAI	CTGCAG	1 cut(s)	1759
BspMI	ACCTGC	2 cut(s)	897, 1039
BspOI	GCTAGC	2 cut(s)	1692, 2582
BspPI	GGATC	9 cut(s)	602, 1242, 1255, 1439, 1924, 2172, 2185, 2260, 2334
BspQI	GCTCTTC	3 cut(s)	821, 1032, 1301
BspT104I	TTCGAA	1 cut(s)	115
BspT107I	GGYRCC	2 cut(s)	56, 909
BspTNI	GGTCTC	3 cut(s)	327, 1373, 2765
BsrBI	CCGCTC	2 cut(s)	877, 1313
BsrDI	GCAATG	5 cut(s)	60, 1278, 1421, 2063, 2424
BsrI	ACTGG	5 cut(s)	345, 485, 525, 1873, 2790
BssECI	CCNNGG	6 cut(s)	261, 324, 1559, 1748, 2285, 2808
BssT1I	CCWWGG	5 cut(s)	261, 324, 1559, 1748, 2285
Bst2UI	CCWGG	7 cut(s)	268, 407, 1191, 1278, 1376, 1676, 2809
Bst4CI	ACNGT	6 cut(s)	1096, 1819, 1990, 2303, 2393, 2828
Bst6I	CTCTTC	4 cut(s)	821, 1032, 1301, 2160
BstAPI	GCANNNNNTGC	2 cut(s)	1964, 2207
BstBI	TTCGAA	1 cut(s)	115
BstDSI	CCRYGG	2 cut(s)	324, 2285
BstEII	GGTNACC	2 cut(s)	479, 1079
BstFNI	CGCG	1 cut(s)	450
BstH2I	RGCGCY	2 cut(s)	709, 1075
BstHHI	GCGC	2 cut(s)	708, 1074
BstMAI	GTCTC	7 cut(s)	327, 986, 1275, 1373, 1979, 2463, 2765
BstMCI	CGRYCG	1 cut(s)	1992
BstNI	CCWGG	7 cut(s)	268, 407, 1191, 1278, 1376, 1676, 2809
BstNSI	RCATGY	3 cut(s)	179, 1185, 1649
BstPI	GGTNACC	2 cut(s)	479, 1079
BstSCI	CCNGG	7 cut(s)	266, 405, 1189, 1276, 1374, 1674, 2807
BstSFI	CTRYAG	3 cut(s)	1755, 2168, 2667
BstSLI	GKGCMC	2 cut(s)	1189, 2826
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	8 cut(s)	52, 1061, 1556, 2340, 2545, 2673, 2696, 2733
BstV2I	GAAGAC	3 cut(s)	425, 2222, 2810
BstX2I	RGATCY	8 cut(s)	668, 781, 1247, 1444, 2177, 2252, 2368, 2425
BstXI	CCANNNNNNTGG	2 cut(s)	274, 2249
BstYI	RGATCY	8 cut(s)	668, 781, 1247, 1444, 2177, 2252, 2368, 2425
BsuRI	GGCC	6 cut(s)	266, 654, 1154, 1374, 2238, 3051
BtgI	CCRYGG	2 cut(s)	324, 2285
BtsI	GCAGTG	3 cut(s)	2663, 2882, 2942
BveI	ACCTGC	2 cut(s)	897, 1039
CaiI	CAGNNNCTG	3 cut(s)	1100, 1331, 2785
CfoI	GCGC	2 cut(s)	708, 1074
Cfr13I	GGNCC	6 cut(s)	403, 468, 1193, 1372, 1745, 2237
CseI	GACGC	1 cut(s)	430
CsiI	ACCWGGT	1 cut(s)	1189
Csp6I	GTAC	6 cut(s)	910, 1453, 1460, 1480, 2384, 2623
CspCI	CAANNNNNGTGG	2 cut(s)	2100, 2135
CviQI	GTAC	6 cut(s)	910, 1453, 1460, 1480, 2384, 2623
DrdI	GACNNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	4 cut(s)	821, 1032, 1301, 2160
EarI	CTCTTC	4 cut(s)	821, 1032, 1301, 2160
Ecl136II	GAGCTC	2 cut(s)	1294, 2848
Eco130I	CCWWGG	5 cut(s)	261, 324, 1559, 1748, 2285
Eco24I	GRGCYC	3 cut(s)	1296, 2850, 3107
Eco31I	GGTCTC	3 cut(s)	327, 1373, 2765
Eco47I	GGWCC	4 cut(s)	403, 468, 1193, 1745
Eco47III	AGCGCT	1 cut(s)	1073
Eco53kI	GAGCTC	2 cut(s)	1294, 2848
Eco57I	CTGAAG	1 cut(s)	1988
Eco88I	CYCGRG	1 cut(s)	1067
Eco91I	GGTNACC	2 cut(s)	479, 1079
EcoICRI	GAGCTC	2 cut(s)	1294, 2848
EcoO109I	RGGNCCY	2 cut(s)	1745, 2237
EcoO65I	GGTNACC	2 cut(s)	479, 1079
EcoRI	GAATTC	2 cut(s)	111, 226
EcoRII	CCWGG	7 cut(s)	266, 405, 1189, 1276, 1374, 1674, 2807
EcoT14I	CCWWGG	5 cut(s)	261, 324, 1559, 1748, 2285
EcoT38I	GRGCYC	3 cut(s)	1296, 2850, 3107
ErhI	CCWWGG	5 cut(s)	261, 324, 1559, 1748, 2285
Esp3I	CGTCTC	1 cut(s)	1979
FaqI	GGGAC	1 cut(s)	2472
FauI	CCCGC	1 cut(s)	455
FauNDI	CATATG	1 cut(s)	1204
Fnu4HI	GCNGC	9 cut(s)	66, 1075, 1545, 2354, 2559, 2662, 2685, 2722, 2725
FriOI	GRGCYC	3 cut(s)	1296, 2850, 3107
Fsp4HI	GCNGC	9 cut(s)	66, 1075, 1545, 2354, 2559, 2662, 2685, 2722, 2725
GlaI	GCGC	2 cut(s)	707, 1073
GluI	GCNGC	9 cut(s)	66, 1075, 1545, 2354, 2559, 2662, 2685, 2722, 2725
GsaI	CCCAGC	1 cut(s)	2106
GsuI	CTGGAG	3 cut(s)	351, 1299, 2735
HaeII	RGCGCY	2 cut(s)	709, 1075
HaeIII	GGCC	6 cut(s)	266, 654, 1154, 1374, 2238, 3051
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	2 cut(s)	708, 1074
Hin6I	GCGC	2 cut(s)	706, 1072
HinP1I	GCGC	2 cut(s)	706, 1072
HincII	GTYRAC	3 cut(s)	181, 432, 1210
HindII	GTYRAC	3 cut(s)	181, 432, 1210
HindIII	AAGCTT	6 cut(s)	220, 347, 1341, 1406, 1961, 2900
HphI	GGTGA	5 cut(s)	250, 1073, 1150, 1648, 1804
Hpy166II	GTNNAC	6 cut(s)	181, 355, 432, 1187, 1210, 2824
Hpy8I	GTNNAC	6 cut(s)	181, 355, 432, 1187, 1210, 2824
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	955, 1409
HpyCH4III	ACNGT	6 cut(s)	1096, 1819, 1990, 2303, 2393, 2828
HpyCH4IV	ACGT	4 cut(s)	241, 541, 984, 2521
HpySE526I	ACGT	4 cut(s)	241, 541, 984, 2521
HspAI	GCGC	2 cut(s)	706, 1072
KpnI	GGTACC	1 cut(s)	913
LguI	GCTCTTC	3 cut(s)	821, 1032, 1301
LmnI	GCTCC	4 cut(s)	106, 859, 2845, 3077
Lsp1109I	GCAGC	8 cut(s)	52, 1061, 1556, 2340, 2545, 2673, 2696, 2733
MabI	ACCWGGT	1 cut(s)	1189
MaeII	ACGT	4 cut(s)	241, 541, 984, 2521
MaeIII	GTNAC	5 cut(s)	479, 916, 1079, 1832, 2781
MbiI	CCGCTC	2 cut(s)	877, 1313
MflI	RGATCY	8 cut(s)	668, 781, 1247, 1444, 2177, 2252, 2368, 2425
MhlI	GDGCHC	5 cut(s)	1189, 1296, 2826, 2850, 3107
MlsI	TGGCCA	1 cut(s)	654
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	5 cut(s)	437, 1277, 1922, 2146, 2157
MmeI	TCCRAC	2 cut(s)	2230, 2304
Mox20I	TGGCCA	1 cut(s)	654
MroXI	GAANNNNTTC	1 cut(s)	1008
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	7 cut(s)	294, 971, 1235, 1661, 2607, 2646, 3045
MslI	CAYNNNNRTG	2 cut(s)	174, 2067
Msp20I	TGGCCA	1 cut(s)	654
MspA1I	CMGCKG	2 cut(s)	2353, 2724
MspR9I	CCNGG	7 cut(s)	268, 407, 1191, 1278, 1376, 1676, 2809
Mva1269I	GAATGC	5 cut(s)	1234, 1547, 2010, 2133, 2452
MvaI	CCWGG	7 cut(s)	268, 407, 1191, 1278, 1376, 1676, 2809
MvnI	CGCG	1 cut(s)	450
NcoI	CCATGG	2 cut(s)	324, 2285
NdeI	CATATG	1 cut(s)	1204
NheI	GCTAGC	2 cut(s)	1688, 2578
NlaIV	GGNNCC	6 cut(s)	58, 911, 1249, 1746, 2179, 2239
NmuCI	GTSAC	3 cut(s)	1079, 1832, 2781
NspI	RCATGY	3 cut(s)	179, 1185, 1649
NspV	TTCGAA	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	1067
PciI	ACATGT	1 cut(s)	1181
PciSI	GCTCTTC	3 cut(s)	821, 1032, 1301
PctI	GAATGC	5 cut(s)	1234, 1547, 2010, 2133, 2452
PdmI	GAANNNNTTC	1 cut(s)	1008
PfeI	GAWTC	6 cut(s)	154, 389, 1775, 2261, 2597, 2952
PfoI	TCCNGGA	1 cut(s)	405
PkrI	GCNGC	9 cut(s)	67, 1076, 1546, 2355, 2560, 2663, 2686, 2723, 2726
PleI	GAGTC	5 cut(s)	436, 1277, 1921, 2146, 2157
PpsI	GAGTC	5 cut(s)	436, 1277, 1921, 2146, 2157
PpuMI	RGGWCCY	1 cut(s)	1745
PscI	ACATGT	1 cut(s)	1181
PsiI	TTATAA	1 cut(s)	2379
Psp124BI	GAGCTC	2 cut(s)	1296, 2850
Psp5II	RGGWCCY	1 cut(s)	1745
Psp6I	CCWGG	7 cut(s)	266, 405, 1189, 1276, 1374, 1674, 2807
PspEI	GGTNACC	2 cut(s)	479, 1079
PspFI	CCCAGC	1 cut(s)	2102
PspGI	CCWGG	7 cut(s)	266, 405, 1189, 1276, 1374, 1674, 2807
PspN4I	GGNNCC	6 cut(s)	58, 911, 1249, 1746, 2179, 2239
PspPI	GGNCC	6 cut(s)	403, 468, 1193, 1372, 1745, 2237
PspPPI	RGGWCCY	1 cut(s)	1745
PspXI	VCTCGAGB	1 cut(s)	1067
PstI	CTGCAG	1 cut(s)	1759
PstNI	CAGNNNCTG	3 cut(s)	1100, 1331, 2785
PsuI	RGATCY	8 cut(s)	668, 781, 1247, 1444, 2177, 2252, 2368, 2425
PvuII	CAGCTG	1 cut(s)	2353
RsaI	GTAC	6 cut(s)	911, 1454, 1461, 1481, 2385, 2624
RsaNI	GTAC	6 cut(s)	910, 1453, 1460, 1480, 2384, 2623
RseI	CAYNNNNRTG	2 cut(s)	174, 2067
SacI	GAGCTC	2 cut(s)	1296, 2850
SapI	GCTCTTC	3 cut(s)	821, 1032, 1301
SaqAI	TTAA	7 cut(s)	294, 971, 1235, 1661, 2607, 2646, 3045
SatI	GCNGC	9 cut(s)	66, 1075, 1545, 2354, 2559, 2662, 2685, 2722, 2725
Sau96I	GGNCC	6 cut(s)	403, 468, 1193, 1372, 1745, 2237
SchI	GAGTC	5 cut(s)	437, 1277, 1922, 2146, 2157
ScrFI	CCNGG	7 cut(s)	268, 407, 1191, 1278, 1376, 1676, 2809
SduI	GDGCHC	5 cut(s)	1189, 1296, 2826, 2850, 3107
SexAI	ACCWGGT	1 cut(s)	1189
SfcI	CTRYAG	3 cut(s)	1755, 2168, 2667
Sfr274I	CTCGAG	1 cut(s)	1067
SfuI	TTCGAA	1 cut(s)	115
SinI	GGWCC	4 cut(s)	403, 468, 1193, 1745
SlaI	CTCGAG	1 cut(s)	1067
SmiMI	CAYNNNNRTG	2 cut(s)	174, 2067
SmlI	CTYRAG	5 cut(s)	143, 425, 1067, 2553, 2618
SmoI	CTYRAG	5 cut(s)	143, 425, 1067, 2553, 2618
SpeI	ACTAGT	1 cut(s)	2933
SsiI	CCGC	6 cut(s)	448, 877, 1046, 1077, 1311, 2724
SstI	GAGCTC	2 cut(s)	1296, 2850
StyD4I	CCNGG	7 cut(s)	266, 405, 1189, 1276, 1374, 1674, 2807
StyI	CCWWGG	5 cut(s)	261, 324, 1559, 1748, 2285
TaaI	ACNGT	6 cut(s)	1096, 1819, 1990, 2303, 2393, 2828
TaiI	ACGT	4 cut(s)	244, 544, 987, 2524
TaqI	TCGA	6 cut(s)	115, 157, 454, 1068, 1992, 2868
TaqII	GACCGA	1 cut(s)	485
TatI	WGTACW	1 cut(s)	1452
TauI	GCSGC	1 cut(s)	2727
TfiI	GAWTC	6 cut(s)	154, 389, 1775, 2261, 2597, 2952
Tru1I	TTAA	7 cut(s)	294, 971, 1235, 1661, 2607, 2646, 3045
Tru9I	TTAA	7 cut(s)	294, 971, 1235, 1661, 2607, 2646, 3045
TseFI	GTSAC	3 cut(s)	1079, 1832, 2781
TseI	GCWGC	8 cut(s)	65, 1074, 1544, 2353, 2558, 2661, 2684, 2721
Tsp45I	GTSAC	3 cut(s)	1079, 1832, 2781
VneI	GTGCAC	2 cut(s)	1185, 2822
VpaK11BI	GGWCC	4 cut(s)	403, 468, 1193, 1745
XapI	RAATTY	9 cut(s)	111, 128, 226, 514, 620, 728, 1970, 3056, 3069
XbaI	TCTAGA	4 cut(s)	83, 784, 1264, 1286
XceI	RCATGY	3 cut(s)	179, 1185, 1649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2711
XhoI	CTCGAG	1 cut(s)	1067
XmaJI	CCTAGG	1 cut(s)	1748
XmnI	GAANNNNTTC	1 cut(s)	1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.