Rh2BG442900

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
62742890 .. 62749306
6417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG442900.1

Sequence Viewer

Length: 1605 bp
ATGGACAAATGGGCGTTCTTAATTTGGAACCTCACAGATCCTAATGGGCCATTGATATACAAAAACGTGTACCATCATTTTTATCAATATAATCCTCATGGTGTAGCGTGGTCACCCAATATAGTTTGGGCCCATTCAACATCAAATGATCTTGTCAATTGGATTCCACATGACGATGCCCTCAATCCATCAGAGCCGTTTGATATTAACGGTTGTTGGTCGGGGTCTGCTACAATCCTCCCTGGGGAAAAGCCGGCCATTTTCTACACTGGAATCAACTCCGAAAATGAGCAAGTTCAAAACTTGGCCTTCCCCAAAAATCTCTCAGACCCATTTCTCAGAGAATGGGTTAAAATCCCACAAAACCCACTAATGATCCCAACCGAAGCTAACCAAATAAATGCAGACTCATTTAGGGACCCAAGTACTGCTTGGCTAGGGTCAGATAATAGATGGAGATTAGTCATTGGAAGCAAGAAAAACCAAACTGGCCTAGCCATTCTATATATGAGCGAAGATTTCCTACATTGGACCATGGTAAACCACACCTTTCATTCAGCAAAGGAAAATGGAATGTGGGAGTGCCCAGATTTTTTCCCAGTTTCAAACAGTAGCCCAATTGGTCTTGACACATCAACGAATGGTCCGGATGTTAAGCATGTGCTCAAGGTTAGCTTGTTTGATACTGCTAAAGAGTACTACACAATTGGAACATATAACCTAGACAAAGATATATATAACCCTGATAAGGGATCAGTGGAGAGTGATTTGGGTTTGAGATATGATTATGGTAAGTTTTATGCATCAAAATCCTTCTTTGACAGTGCTAAGAACCGTAGGATCTTGTGGGGTTGGAGTAATGAATCCTCAAGTGCCAATGATGACATCAAGAAGGGTTGGTCTGGACTCCAGACAATTCCAAGGACCATTTTACTTGATGAGTCTGGGAAACAATTGGTACAATGGCCCATCGAAGAACTTGAAAAACTGAGAACAAAGCAGGTTAGGTTGCCAAGAATTGTGATAGAGGGAGGATCACTACATGAAGTACTTGGAGTCACAGCAGCACAGGCAGATGTAGAAGTTACATTTGAGATAAGTGATTTTGAAAAAACAGAGGTGCTGGATCCAAGTTGGACCGATCCACAAATTTTGTGTAGCAAAAAGGATGCCTCAGTTTATGGGGGTCTAGGACCATTTGGGTTGCTGGTTTTGGCTTCAGAGAGTTTGCAAGAATACACAGCAGTCTTTTATAGAATATTCAAATCTCACAACAACAAATATGTGGTGCTCATGTGCAGTGATCAAAGCAGGTCTTCCTTAAACGAAAATAATGATAAGACCACATACGGGGCCTTTGTAGATGTGGATCCTGTTCATGAGAAGCTATCACTCAGAAGCTTGATTGATCACTCTATAGTGGAGAGCTTTGGTGGAGAAGGCAAGGCGTGCATAACAGCCAGGGTTTATCCCACATTGGCTGTTGATGGTTATACCAGCTTATATACTTTCAATTATGGGAAGGAGGGTGTAAAAATCACAGGAAGTGCATGGAGCATGAGGACTGCAAAGATTAATCGATCAAGAAAAGAAGAGAATGAATAG

Protein Analysis

534

Amino Acids

60.33

Weight (kDa)

5.35

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 11 - 323 1.7e-94 Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C PF08244 326 - 509 1.1e-24 Glycosyl hydrolases family 32 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 991, 1302
AccIII TCCGGA 1 cut(s) 646
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 1 cut(s) 1149
AcuI CTGAAG 1 cut(s) 1203
AfaI GTAC 5 cut(s) 71, 427, 698, 960, 1050
AfiI CCNNNNNNNGG 4 cut(s) 244, 748, 749, 1350
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 7 cut(s) 138, 299, 606, 983, 1109, 1264, 1513
AjnI CCWGG 2 cut(s) 241, 1460
AluBI AGCT 6 cut(s) 389, 675, 1387, 1401, 1428, 1500
AluI AGCT 6 cut(s) 389, 675, 1387, 1401, 1428, 1500
Alw21I GWGCWC 2 cut(s) 666, 1293
Aor13HI TCCGGA 1 cut(s) 646
AoxI GGCC 7 cut(s) 47, 129, 255, 306, 490, 965, 1353
ApaI GGGCCC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 1064
ApoI RAATTY 1 cut(s) 1149
AseI ATTAAT 1 cut(s) 1575
AsuHPI GGTGA 1 cut(s) 105
AvaII GGWCC 6 cut(s) 418, 531, 644, 924, 1137, 1193
BaeGI GKGCMC 2 cut(s) 133, 587
BamHI GGATCC 2 cut(s) 1126, 1369
BanII GRGCYC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 507, 539
BbsI GAAGAC 1 cut(s) 1308
Bbv12I GWGCWC 2 cut(s) 666, 1293
BbvI GCAGC 1 cut(s) 1076
BccI CCATC 5 cut(s) 81, 196, 447, 977, 1481
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 2 cut(s) 243, 1462
BclI TGATCA 2 cut(s) 1303, 1408
BfaI CTAG 4 cut(s) 437, 494, 722, 1190
BfmI CTRYAG 1 cut(s) 1416
BfuAI ACCTGC 2 cut(s) 991, 1302
BisI GCNGC 1 cut(s) 1065
BlsI GCNGC 1 cut(s) 1066
BmcAI AGTACT 3 cut(s) 427, 698, 1050
Bme1390I CCNGG 2 cut(s) 243, 1462
Bme18I GGWCC 6 cut(s) 418, 531, 644, 924, 1137, 1193
BmiI GGNNCC 7 cut(s) 29, 131, 419, 420, 1128, 1354, 1371
BmrFI CCNGG 2 cut(s) 243, 1462
BmrI ACTGGG 1 cut(s) 593
BmsI GCATC 3 cut(s) 166, 812, 1159
BmuI ACTGGG 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 1308
BpmI CTGGAG 1 cut(s) 893
BpuEI CTTGAG 2 cut(s) 650, 853
Bsa29I ATCGAT 1 cut(s) 1579
BsaBI GATNNNNATC 1 cut(s) 1368
BsaJI CCNNGG 5 cut(s) 241, 242, 534, 920, 1461
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 748, 749, 1350
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 3 cut(s) 274, 493, 599
Bse8I GATNNNNATC 1 cut(s) 1368
BseAI TCCGGA 1 cut(s) 646
BseBI CCWGG 2 cut(s) 243, 1462
BseCI ATCGAT 1 cut(s) 1579
BseDI CCNNGG 5 cut(s) 241, 242, 534, 920, 1461
BseGI GGATG 2 cut(s) 655, 1174
BseJI GATNNNNATC 1 cut(s) 1368
BseLI CCNNNNNNNGG 4 cut(s) 244, 748, 749, 1350
BseMII CTCAG 5 cut(s) 339, 352, 980, 1188, 1408
BseNI ACTGG 3 cut(s) 274, 493, 599
BseSI GKGCMC 2 cut(s) 133, 587
BseXI GCAGC 1 cut(s) 1076
BsgI GTGCAG 1 cut(s) 1318
BshFI GGCC 7 cut(s) 49, 131, 257, 308, 492, 967, 1355
BshVI ATCGAT 1 cut(s) 1579
BsiHKAI GWGCWC 2 cut(s) 666, 1293
BsiSI CCGG 2 cut(s) 254, 647
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 4 cut(s) 244, 748, 749, 1350
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 7 cut(s) 49, 131, 257, 308, 492, 967, 1355
Bsp120I GGGCCC 1 cut(s) 129
Bsp1286I GDGCHC 4 cut(s) 133, 587, 666, 1293
Bsp13I TCCGGA 1 cut(s) 646
Bsp19I CCATGG 1 cut(s) 534
BspANI GGCC 7 cut(s) 49, 131, 257, 308, 492, 967, 1355
BspCNI CTCAG 5 cut(s) 338, 351, 981, 1187, 1407
BspDI ATCGAT 1 cut(s) 1579
BspEI TCCGGA 1 cut(s) 646
BspHI TCATGA 1 cut(s) 1378
BspLI GGNNCC 7 cut(s) 29, 131, 419, 420, 1128, 1354, 1371
BspMI ACCTGC 2 cut(s) 991, 1302
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 3 cut(s) 274, 493, 599
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 5 cut(s) 241, 242, 534, 920, 1461
BssT1I CCWWGG 2 cut(s) 534, 920
Bst2UI CCWGG 2 cut(s) 243, 1462
Bst4CI ACNGT 4 cut(s) 212, 611, 824, 836
Bst6I CTCTTC 1 cut(s) 1587
BstAPI GCANNNNNTGC 1 cut(s) 1449
BstC8I GCNNGC 2 cut(s) 255, 1450
BstDEI CTNAG 6 cut(s) 325, 338, 828, 989, 1174, 1394
BstDSI CCRYGG 1 cut(s) 534
BstEII GGTNACC 1 cut(s) 111
BstF5I GGATG 2 cut(s) 655, 1174
BstMWI GCNNNNNNNGC 2 cut(s) 1070, 1449
BstNI CCWGG 2 cut(s) 243, 1462
BstNSI RCATGY 1 cut(s) 662
BstPI GGTNACC 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 241, 1460
BstSFI CTRYAG 1 cut(s) 1416
BstSLI GKGCMC 2 cut(s) 133, 587
BstV1I GCAGC 1 cut(s) 1076
BstV2I GAAGAC 1 cut(s) 1308
BstX2I RGATCY 4 cut(s) 37, 840, 1126, 1369
BstYI RGATCY 4 cut(s) 37, 840, 1126, 1369
Bsu15I ATCGAT 1 cut(s) 1579
BsuRI GGCC 7 cut(s) 49, 131, 257, 308, 492, 967, 1355
BsuTUI ATCGAT 1 cut(s) 1579
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 655, 1174
BtsI GCAGTG 1 cut(s) 1306
BtsIMutI CAGTG 4 cut(s) 267, 762, 829, 1306
BveI ACCTGC 2 cut(s) 991, 1302
Cac8I GCNNGC 2 cut(s) 255, 1450
CciI TCATGA 1 cut(s) 1378
Cfr10I RCCGGY 1 cut(s) 253
ClaI ATCGAT 1 cut(s) 1579
Csp6I GTAC 5 cut(s) 70, 426, 697, 959, 1049
CspCI CAANNNNNGTGG 2 cut(s) 1134, 1169
CviAII CATG 9 cut(s) 98, 170, 535, 659, 1043, 1294, 1379, 1551, 1558
CviQI GTAC 5 cut(s) 70, 426, 697, 959, 1049
DdeI CTNAG 6 cut(s) 325, 338, 828, 989, 1174, 1394
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 1587
EarI CTCTTC 1 cut(s) 1587
Eco130I CCWWGG 2 cut(s) 534, 920
Eco24I GRGCYC 1 cut(s) 133
Eco47I GGWCC 6 cut(s) 418, 531, 644, 924, 1137, 1193
Eco57I CTGAAG 1 cut(s) 1203
Eco91I GGTNACC 1 cut(s) 111
EcoO109I RGGNCCY 2 cut(s) 418, 1353
EcoO65I GGTNACC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 241, 1460
EcoT14I CCWWGG 2 cut(s) 534, 920
EcoT22I ATGCAT 1 cut(s) 805
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 534, 920
FaeI CATG 9 cut(s) 101, 173, 538, 662, 1046, 1297, 1382, 1554, 1561
FalI AAGNNNNNCTT 6 cut(s) 415, 447, 659, 691, 1300, 1332
FaqI GGGAC 1 cut(s) 431
FatI CATG 9 cut(s) 97, 169, 534, 658, 1042, 1293, 1378, 1550, 1557
FbaI TGATCA 2 cut(s) 1303, 1408
Fnu4HI GCNGC 1 cut(s) 1065
FokI GGATG 2 cut(s) 662, 1181
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 1065
FspBI CTAG 4 cut(s) 437, 494, 722, 1190
GluI GCNGC 1 cut(s) 1065
GsuI CTGGAG 1 cut(s) 893
HaeIII GGCC 7 cut(s) 49, 131, 257, 308, 492, 967, 1355
HapII CCGG 2 cut(s) 254, 647
Hin1II CATG 9 cut(s) 101, 173, 538, 662, 1046, 1297, 1382, 1554, 1561
HindIII AAGCTT 1 cut(s) 1399
HinfI GANTC 7 cut(s) 163, 273, 407, 863, 906, 941, 1056
HpaII CCGG 2 cut(s) 254, 647
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 70, 541
Hpy188I TCNGA 7 cut(s) 193, 283, 328, 341, 445, 1222, 1397
Hpy188III TCNNGA 7 cut(s) 626, 647, 889, 903, 910, 1379, 1584
Hpy8I GTNNAC 2 cut(s) 70, 541
HpyAV CCTTC 5 cut(s) 319, 823, 886, 1433, 1516
HpyCH4III ACNGT 4 cut(s) 212, 611, 824, 836
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 7 cut(s) 404, 803, 1231, 1299, 1452, 1550, 1568
HpyF10VI GCNNNNNNNGC 2 cut(s) 1070, 1449
HpyF3I CTNAG 6 cut(s) 325, 338, 828, 989, 1174, 1394
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 9 cut(s) 101, 173, 538, 662, 1046, 1297, 1382, 1554, 1561
KflI GGGWCCC 1 cut(s) 418
Kpn2I TCCGGA 1 cut(s) 646
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Ksp22I TGATCA 2 cut(s) 1303, 1408
LmnI GCTCC 1 cut(s) 1554
Lsp1109I GCAGC 1 cut(s) 1076
LweI GCATC 3 cut(s) 166, 812, 1159
MaeI CTAG 4 cut(s) 437, 494, 722, 1190
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 111, 1057, 1084
MboII GAAGA 4 cut(s) 527, 986, 1308, 1604
MfeI CAATTG 4 cut(s) 157, 618, 705, 953
MflI RGATCY 4 cut(s) 37, 840, 1126, 1369
MhlI GDGCHC 4 cut(s) 133, 587, 666, 1293
MluCI AATT 9 cut(s) 21, 157, 618, 705, 915, 953, 1017, 1149, 1513
MlyI GAGTC 4 cut(s) 401, 900, 950, 1065
MmeI TCCRAC 2 cut(s) 833, 1115
Mph1103I ATGCAT 1 cut(s) 805
MroI TCCGGA 1 cut(s) 646
MroNI GCCGGC 1 cut(s) 253
MseI TTAA 6 cut(s) 20, 207, 351, 654, 1322, 1575
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 2 cut(s) 254, 647
MspR9I CCNGG 2 cut(s) 243, 1462
MunI CAATTG 4 cut(s) 157, 618, 705, 953
MvaI CCWGG 2 cut(s) 243, 1462
MwoI GCNNNNNNNGC 2 cut(s) 1070, 1449
NaeI GCCGGC 1 cut(s) 255
NcoI CCATGG 1 cut(s) 534
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 9 cut(s) 101, 173, 538, 662, 1046, 1297, 1382, 1554, 1561
NlaIV GGNNCC 7 cut(s) 29, 131, 419, 420, 1128, 1354, 1371
NmuCI GTSAC 2 cut(s) 111, 1057
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 1 cut(s) 662
PagI TCATGA 1 cut(s) 1378
PasI CCCWGGG 1 cut(s) 242
PdiI GCCGGC 1 cut(s) 255
PfeI GAWTC 3 cut(s) 163, 273, 863
PkrI GCNGC 1 cut(s) 1066
PleI GAGTC 4 cut(s) 401, 900, 949, 1064
PpsI GAGTC 4 cut(s) 401, 900, 949, 1064
PpuMI RGGWCCY 1 cut(s) 418
PshBI ATTAAT 1 cut(s) 1575
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 2 cut(s) 241, 1460
PspEI GGTNACC 1 cut(s) 111
PspGI CCWGG 2 cut(s) 241, 1460
PspN4I GGNNCC 7 cut(s) 29, 131, 419, 420, 1128, 1354, 1371
PspOMI GGGCCC 1 cut(s) 129
PspPPI RGGWCCY 1 cut(s) 418
PsuI RGATCY 4 cut(s) 37, 840, 1126, 1369
RsaI GTAC 5 cut(s) 71, 427, 698, 960, 1050
RsaNI GTAC 5 cut(s) 70, 426, 697, 959, 1049
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 6 cut(s) 20, 207, 351, 654, 1322, 1575
SatI GCNGC 1 cut(s) 1065
ScaI AGTACT 3 cut(s) 427, 698, 1050
SchI GAGTC 4 cut(s) 401, 900, 950, 1065
ScrFI CCNGG 2 cut(s) 243, 1462
SduI GDGCHC 4 cut(s) 133, 587, 666, 1293
SfaNI GCATC 3 cut(s) 166, 812, 1159
SfcI CTRYAG 1 cut(s) 1416
SinI GGWCC 6 cut(s) 418, 531, 644, 924, 1137, 1193
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 2 cut(s) 665, 868
SmoI CTYRAG 2 cut(s) 665, 868
Sse9I AATT 9 cut(s) 21, 157, 618, 705, 915, 953, 1017, 1149, 1513
SspI AATATT 1 cut(s) 1260
SspMI CTAG 4 cut(s) 437, 494, 722, 1190
StyD4I CCNGG 2 cut(s) 241, 1460
StyI CCWWGG 2 cut(s) 534, 920
TaaI ACNGT 4 cut(s) 212, 611, 824, 836
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 972, 1579
TaqII GACCGA 1 cut(s) 1154
TasI AATT 9 cut(s) 21, 157, 618, 705, 915, 953, 1017, 1149, 1513
TatI WGTACW 3 cut(s) 425, 696, 1048
TfiI GAWTC 3 cut(s) 163, 273, 863
Tru1I TTAA 6 cut(s) 20, 207, 351, 654, 1322, 1575
Tru9I TTAA 6 cut(s) 20, 207, 351, 654, 1322, 1575
TscAI CASTG 4 cut(s) 274, 762, 829, 1306
TseFI GTSAC 2 cut(s) 111, 1057
TseI GCWGC 1 cut(s) 1064
Tsp45I GTSAC 2 cut(s) 111, 1057
TspDTI ATGAA 4 cut(s) 542, 876, 1059, 1367
TspRI CASTG 4 cut(s) 274, 762, 829, 1306
VpaK11BI GGWCC 6 cut(s) 418, 531, 644, 924, 1137, 1193
VspI ATTAAT 1 cut(s) 1575
XapI RAATTY 1 cut(s) 1149
XceI RCATGY 1 cut(s) 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XspI CTAG 4 cut(s) 437, 494, 722, 1190
ZrmI AGTACT 3 cut(s) 427, 698, 1050
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.