Rroxscaffold_2G00101770

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
23676341 .. 23682501
6161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101770.1

Sequence Viewer

Length: 1764 bp
ATGGCCTTGATGATATTCTCTCTTCGGATATTCTTCTTTCTTTCAGCTTTGCTTTCCTTTGGCGTTATTGAGCTTGAAGGTTCCCACCATGCTTGCAGCAACCTTCTGAATTTGGAACTGCCTTCAACATGCCAAGCTAAAGAGCCTTACAGAACTGGGTATCATTTCCAGCCTCCCAAGAATTGGATCAATGATCCTAATGGGCCATTGATTTACAAAAAAATGTACCATCATTTTTGTCAATATAATCCTCATGGTGTAGCGTGGTCACCCAATATTGTTTGGGCCCATTCAACATCAAATGATCTTGTCAATTGGACTCCACATGACGATGCCCTCAACCCATCAGAGCCGTTTGATATTAACGGTTGTTGGTCGGGGTCTGCTACAATCCTCCCTGGGGAAAAGCCGGCCATTTTCTACACTGGAATCAACTCCGAAAATGAGCAAGTTCAAAACTTAGCCTTCCCCAAAAATCTCTCAGACCCTTTTCTCAGAGAATGGGTTAAAATCCCACAAAACCCACTAATGATCCCAACCGAAGCTAGCCAAATAAATGCAGACTCATTTAGGGACCCAACTACTGCTTGGCTAGGGTCAGATAATAGATGGAGATTAGTCGTTGGAAGCAAGAAAAACCAAACTGGCCTAGCCATTCTATATATGAGCCAAGATTTCCTACATTGGACCATGGTAAACCACACCTTTCATTCAGCAAAGGAAAATGGAATGTGGGAGTGCCCAGATTTTTTCCCAGTTTCAAAGAGTAGCCCAATTGGTCTTGACACATCAACGAATGGTCCGGATGTTAAGCATGTGCTCAAGGTTAGCTTGTTTGATACTGCTAAAGAGTACTACACAATTGGAACATATAACCTAGACAAAGATATATATAACCCTGATAAGGGATCAGTGGAGAGTGATTTGGGTTTGAGATATGATTATGGTAAGTTTTATGCATCAAAATCCTTCTTTGACAGTGCTAAGAACCGTAGGATCTTGTGGGGTTGGAGTAATGAATCCTCAAGTGCCAATGATGACATCAAGAAGGGTTGGTCTGGACTCCAGGCAATTCCAAGGACCATTTTACTTGATGAGTCTGGGAAACAATTGGTACAATGGCCCATCGAAGAACTTGAAAAGCTGAGAACAAAGCAGGTTAGGTTGCCAGGTATTGTGATAAAGGGAGGATCACTACATGAAGTACTTGGAGTCACAGCAGCACAGGCAGATATAGAAGTTACATTTGAGATAAGTGATTTTGAAAAAACAGAGGTGCTGGATCCAAGTTGGACCGATCCACAAATTTTGTGTAGCAAAAAGGATGCCTCAGTTTATGGGGGTCTAGGACCATTTGGGTTGCTGGTTTTGGCTTCAGAGGGTTTGCAGGAATACACAGCAATCTTTTATAGAATATTCAAATCTCACAACAACAACAAATATGTGGTGCTCATGTGCAGTGATCAAAGCAGGTCTTCCTTAAATGAAAATAATGACAAGACTACATACGGGGCATTTGTAAATGTGGATCCTGTTCATGAGAAGCTATCAGTCAGAAGCTTGATTGATCACTCTATAGTGGAGAGCTTTGGTGGAGAAGGCAAGGCGTGCATAACAGCTAGGGTTTATCCCACATTGGTTGTTGATGGTTATACCAACTTATATACTTTCAATTATGGGAAAGAGAGTGTAAAAATCTCAGGAAGTGCATGGAGCATGAGGACTGCAAAGATTAATCGATCAAGAAAAGAAGAGAATGAATAG

Protein Analysis

587

Amino Acids

66.13

Weight (kDa)

5.85

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 55 - 375 3.7e-99 Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C PF08244 378 - 571 1.6e-24 Glycosyl hydrolases family 32 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1147, 1461
AccB7I CCANNNNNTGG 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 802
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 2 cut(s) 109, 1305
AcuI CTGAAG 1 cut(s) 1359
AfaI GTAC 4 cut(s) 227, 854, 1116, 1206
AfiI CCNNNNNNNGG 4 cut(s) 183, 400, 904, 905
AgsI TTSAA 9 cut(s) 77, 126, 294, 455, 762, 1139, 1265, 1420, 1672
AjnI CCWGG 3 cut(s) 397, 1065, 1168
Alw21I GWGCWC 2 cut(s) 822, 1452
Aor13HI TCCGGA 1 cut(s) 802
AoxI GGCC 6 cut(s) 3, 203, 285, 411, 646, 1121
ApaI GGGCCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 96, 1220
ApoI RAATTY 2 cut(s) 109, 1305
AseI ATTAAT 1 cut(s) 1734
AsuHPI GGTGA 1 cut(s) 261
AsuNHI GCTAGC 1 cut(s) 545
AvaII GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
BaeGI GKGCMC 2 cut(s) 289, 743
BamHI GGATCC 2 cut(s) 1282, 1528
BanII GRGCYC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 1467
Bbv12I GWGCWC 2 cut(s) 822, 1452
BbvI GCAGC 2 cut(s) 108, 1232
BccI CCATC 5 cut(s) 237, 352, 603, 1133, 1640
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 3 cut(s) 399, 1067, 1170
BclI TGATCA 2 cut(s) 1462, 1567
BfaI CTAG 6 cut(s) 546, 593, 650, 878, 1346, 1620
BfmI CTRYAG 1 cut(s) 1575
BfuAI ACCTGC 2 cut(s) 1147, 1461
BisI GCNGC 2 cut(s) 97, 1221
BlsI GCNGC 2 cut(s) 98, 1222
BmcAI AGTACT 2 cut(s) 854, 1206
Bme1390I CCNGG 3 cut(s) 399, 1067, 1170
Bme18I GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
BmiI GGNNCC 6 cut(s) 82, 287, 575, 576, 1284, 1530
BmrFI CCNGG 3 cut(s) 399, 1067, 1170
BmrI ACTGGG 2 cut(s) 165, 749
BmsI GCATC 3 cut(s) 322, 968, 1315
BmtI GCTAGC 1 cut(s) 549
BmuI ACTGGG 2 cut(s) 165, 749
BpiI GAAGAC 1 cut(s) 1467
BpmI CTGGAG 1 cut(s) 1049
BpuEI CTTGAG 2 cut(s) 806, 1009
Bsa29I ATCGAT 1 cut(s) 1738
BsaJI CCNNGG 4 cut(s) 397, 398, 690, 1076
BsaWI WCCGGW 1 cut(s) 802
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 400, 904, 905
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 4 cut(s) 160, 430, 649, 755
BseAI TCCGGA 1 cut(s) 802
BseBI CCWGG 3 cut(s) 399, 1067, 1170
BseCI ATCGAT 1 cut(s) 1738
BseDI CCNNGG 4 cut(s) 397, 398, 690, 1076
BseGI GGATG 2 cut(s) 811, 1330
BseLI CCNNNNNNNGG 4 cut(s) 183, 400, 904, 905
BseMII CTCAG 5 cut(s) 495, 508, 1136, 1344, 1713
BseNI ACTGG 4 cut(s) 160, 430, 649, 755
BseSI GKGCMC 2 cut(s) 289, 743
BseXI GCAGC 2 cut(s) 108, 1232
BsgI GTGCAG 1 cut(s) 1477
BshFI GGCC 6 cut(s) 5, 205, 287, 413, 648, 1123
BshVI ATCGAT 1 cut(s) 1738
BsiHKAI GWGCWC 2 cut(s) 822, 1452
BsiSI CCGG 2 cut(s) 410, 803
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 4 cut(s) 183, 400, 904, 905
BsmFI GGGAC 1 cut(s) 587
BsnI GGCC 6 cut(s) 5, 205, 287, 413, 648, 1123
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 4 cut(s) 289, 743, 822, 1452
Bsp13I TCCGGA 1 cut(s) 802
Bsp19I CCATGG 1 cut(s) 690
BspANI GGCC 6 cut(s) 5, 205, 287, 413, 648, 1123
BspCNI CTCAG 5 cut(s) 494, 507, 1137, 1343, 1712
BspDI ATCGAT 1 cut(s) 1738
BspEI TCCGGA 1 cut(s) 802
BspHI TCATGA 1 cut(s) 1537
BspLI GGNNCC 6 cut(s) 82, 287, 575, 576, 1284, 1530
BspMI ACCTGC 2 cut(s) 1147, 1461
BspOI GCTAGC 1 cut(s) 549
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 4 cut(s) 160, 430, 649, 755
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 4 cut(s) 397, 398, 690, 1076
BssT1I CCWWGG 2 cut(s) 690, 1076
Bst2UI CCWGG 3 cut(s) 399, 1067, 1170
Bst4CI ACNGT 3 cut(s) 368, 980, 992
Bst6I CTCTTC 2 cut(s) 27, 1746
BstAPI GCANNNNNTGC 1 cut(s) 1608
BstC8I GCNNGC 4 cut(s) 94, 411, 547, 1609
BstDEI CTNAG 7 cut(s) 460, 481, 494, 984, 1145, 1330, 1699
BstDSI CCRYGG 1 cut(s) 690
BstEII GGTNACC 1 cut(s) 267
BstF5I GGATG 2 cut(s) 811, 1330
BstMWI GCNNNNNNNGC 2 cut(s) 1226, 1608
BstNI CCWGG 3 cut(s) 399, 1067, 1170
BstNSI RCATGY 2 cut(s) 132, 818
BstPI GGTNACC 1 cut(s) 267
BstSCI CCNGG 3 cut(s) 397, 1065, 1168
BstSFI CTRYAG 1 cut(s) 1575
BstSLI GKGCMC 2 cut(s) 289, 743
BstV1I GCAGC 2 cut(s) 108, 1232
BstV2I GAAGAC 1 cut(s) 1467
BstX2I RGATCY 3 cut(s) 996, 1282, 1528
BstYI RGATCY 3 cut(s) 996, 1282, 1528
Bsu15I ATCGAT 1 cut(s) 1738
BsuRI GGCC 6 cut(s) 5, 205, 287, 413, 648, 1123
BsuTUI ATCGAT 1 cut(s) 1738
BtgI CCRYGG 1 cut(s) 690
BtsCI GGATG 2 cut(s) 811, 1330
BtsI GCAGTG 1 cut(s) 1465
BtsIMutI CAGTG 4 cut(s) 423, 918, 985, 1465
BveI ACCTGC 2 cut(s) 1147, 1461
Cac8I GCNNGC 4 cut(s) 94, 411, 547, 1609
CciI TCATGA 1 cut(s) 1537
Cfr10I RCCGGY 1 cut(s) 409
ClaI ATCGAT 1 cut(s) 1738
Csp6I GTAC 4 cut(s) 226, 853, 1115, 1205
CspCI CAANNNNNGTGG 6 cut(s) 74, 109, 1290, 1325, 1621, 1656
CviQI GTAC 4 cut(s) 226, 853, 1115, 1205
DdeI CTNAG 7 cut(s) 460, 481, 494, 984, 1145, 1330, 1699
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 27, 1746
EarI CTCTTC 2 cut(s) 27, 1746
Eco130I CCWWGG 2 cut(s) 690, 1076
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
Eco57I CTGAAG 1 cut(s) 1359
Eco91I GGTNACC 1 cut(s) 267
EcoO109I RGGNCCY 1 cut(s) 574
EcoO65I GGTNACC 1 cut(s) 267
EcoRII CCWGG 3 cut(s) 397, 1065, 1168
EcoT14I CCWWGG 2 cut(s) 690, 1076
EcoT22I ATGCAT 1 cut(s) 961
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 2 cut(s) 690, 1076
FalI AAGNNNNNCTT 4 cut(s) 815, 847, 1459, 1491
FaqI GGGAC 1 cut(s) 587
FbaI TGATCA 2 cut(s) 1462, 1567
Fnu4HI GCNGC 2 cut(s) 97, 1221
FokI GGATG 2 cut(s) 818, 1337
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 97, 1221
FspBI CTAG 6 cut(s) 546, 593, 650, 878, 1346, 1620
GluI GCNGC 2 cut(s) 97, 1221
GsuI CTGGAG 1 cut(s) 1049
HaeIII GGCC 6 cut(s) 5, 205, 287, 413, 648, 1123
HapII CCGG 2 cut(s) 410, 803
HindIII AAGCTT 1 cut(s) 1558
HinfI GANTC 7 cut(s) 319, 429, 563, 1019, 1062, 1097, 1212
HpaII CCGG 2 cut(s) 410, 803
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 697
Hpy188I TCNGA 9 cut(s) 27, 108, 349, 439, 484, 497, 601, 1378, 1556
Hpy188III TCNNGA 7 cut(s) 782, 803, 1045, 1059, 1538, 1701, 1743
Hpy8I GTNNAC 1 cut(s) 697
HpyAV CCTTC 7 cut(s) 71, 113, 132, 475, 979, 1042, 1592
HpyCH4III ACNGT 3 cut(s) 368, 980, 992
HpyCH4V TGCA 8 cut(s) 96, 560, 959, 1387, 1458, 1611, 1709, 1727
HpyF10VI GCNNNNNNNGC 2 cut(s) 1226, 1608
HpyF3I CTNAG 7 cut(s) 460, 481, 494, 984, 1145, 1330, 1699
KflI GGGWCCC 1 cut(s) 574
Kpn2I TCCGGA 1 cut(s) 802
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Ksp22I TGATCA 2 cut(s) 1462, 1567
LmnI GCTCC 1 cut(s) 1713
Lsp1109I GCAGC 2 cut(s) 108, 1232
LweI GCATC 3 cut(s) 322, 968, 1315
MaeI CTAG 6 cut(s) 546, 593, 650, 878, 1346, 1620
MaeIII GTNAC 3 cut(s) 267, 1213, 1240
MboII GAAGA 5 cut(s) 14, 25, 1142, 1467, 1763
MfeI CAATTG 4 cut(s) 313, 774, 861, 1109
MflI RGATCY 3 cut(s) 996, 1282, 1528
MhlI GDGCHC 4 cut(s) 289, 743, 822, 1452
MluCI AATT 9 cut(s) 109, 181, 313, 774, 861, 1071, 1109, 1305, 1672
MlyI GAGTC 5 cut(s) 313, 557, 1056, 1106, 1221
MmeI TCCRAC 3 cut(s) 604, 989, 1271
Mph1103I ATGCAT 1 cut(s) 961
MroI TCCGGA 1 cut(s) 802
MroNI GCCGGC 1 cut(s) 409
MseI TTAA 5 cut(s) 363, 507, 810, 1481, 1734
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 2 cut(s) 410, 803
MspR9I CCNGG 3 cut(s) 399, 1067, 1170
MunI CAATTG 4 cut(s) 313, 774, 861, 1109
MvaI CCWGG 3 cut(s) 399, 1067, 1170
MwoI GCNNNNNNNGC 2 cut(s) 1226, 1608
NaeI GCCGGC 1 cut(s) 411
NcoI CCATGG 1 cut(s) 690
NgoMIV GCCGGC 1 cut(s) 409
NheI GCTAGC 1 cut(s) 545
NlaIV GGNNCC 6 cut(s) 82, 287, 575, 576, 1284, 1530
NmuCI GTSAC 2 cut(s) 267, 1213
NsiI ATGCAT 1 cut(s) 961
NspI RCATGY 2 cut(s) 132, 818
PagI TCATGA 1 cut(s) 1537
PasI CCCWGGG 1 cut(s) 398
PdiI GCCGGC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 429, 1019
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 2 cut(s) 98, 1222
PleI GAGTC 5 cut(s) 313, 557, 1056, 1105, 1220
PpsI GAGTC 5 cut(s) 313, 557, 1056, 1105, 1220
PpuMI RGGWCCY 1 cut(s) 574
PshBI ATTAAT 1 cut(s) 1734
Psp5II RGGWCCY 1 cut(s) 574
Psp6I CCWGG 3 cut(s) 397, 1065, 1168
PspEI GGTNACC 1 cut(s) 267
PspGI CCWGG 3 cut(s) 397, 1065, 1168
PspN4I GGNNCC 6 cut(s) 82, 287, 575, 576, 1284, 1530
PspOMI GGGCCC 1 cut(s) 285
PspPPI RGGWCCY 1 cut(s) 574
PsuI RGATCY 3 cut(s) 996, 1282, 1528
RsaI GTAC 4 cut(s) 227, 854, 1116, 1206
RsaNI GTAC 4 cut(s) 226, 853, 1115, 1205
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 5 cut(s) 363, 507, 810, 1481, 1734
SatI GCNGC 2 cut(s) 97, 1221
ScaI AGTACT 2 cut(s) 854, 1206
SchI GAGTC 5 cut(s) 313, 557, 1056, 1106, 1221
ScrFI CCNGG 3 cut(s) 399, 1067, 1170
SduI GDGCHC 4 cut(s) 289, 743, 822, 1452
SfaNI GCATC 3 cut(s) 322, 968, 1315
SfcI CTRYAG 1 cut(s) 1575
SinI GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 2 cut(s) 821, 1024
SmoI CTYRAG 2 cut(s) 821, 1024
Sse9I AATT 9 cut(s) 109, 181, 313, 774, 861, 1071, 1109, 1305, 1672
SspI AATATT 2 cut(s) 277, 1416
SspMI CTAG 6 cut(s) 546, 593, 650, 878, 1346, 1620
StyD4I CCNGG 3 cut(s) 397, 1065, 1168
StyI CCWWGG 2 cut(s) 690, 1076
TaaI ACNGT 3 cut(s) 368, 980, 992
TaqI TCGA 2 cut(s) 1128, 1738
TaqII GACCGA 1 cut(s) 1310
TasI AATT 9 cut(s) 109, 181, 313, 774, 861, 1071, 1109, 1305, 1672
TatI WGTACW 2 cut(s) 852, 1204
TfiI GAWTC 2 cut(s) 429, 1019
Tru1I TTAA 5 cut(s) 363, 507, 810, 1481, 1734
Tru9I TTAA 5 cut(s) 363, 507, 810, 1481, 1734
TscAI CASTG 4 cut(s) 430, 918, 985, 1465
TseFI GTSAC 2 cut(s) 267, 1213
TseI GCWGC 2 cut(s) 96, 1220
Tsp45I GTSAC 2 cut(s) 267, 1213
TspDTI ATGAA 5 cut(s) 698, 1032, 1215, 1500, 1526
TspRI CASTG 4 cut(s) 430, 918, 985, 1465
Van91I CCANNNNNTGG 1 cut(s) 183
VpaK11BI GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
VspI ATTAAT 1 cut(s) 1734
XapI RAATTY 2 cut(s) 109, 1305
XceI RCATGY 2 cut(s) 132, 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 585
XspI CTAG 6 cut(s) 546, 593, 650, 878, 1346, 1620
ZrmI AGTACT 2 cut(s) 854, 1206
Zsp2I ATGCAT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.