Rmu_sc0005083.1_g000014

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005083.1
Physical Location & Seq
Forward (+)
63809 .. 66263
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005083.1_g000014.1.cds

Sequence Viewer

Length: 1584 bp
atgctctcttcatatctaactagtgggccattgatatacaaaaacgtgtaccatcatttttatcaatataatcctcatggtgtagcgtggtcacccaatattgtttgggcccattcaacgtcaaatgatcttgtcaattggattccacatgacgatgccctcaatccatcagagccgtttgatattaacggttgttggtcggggtctgctacaatcctccctggggaaaagccggccattttctacactggaatcaactccgaaaatgagcaagttcaaaacttggccttccccaaaaatctctcagacccatttctcagagaatgggttaaaatcccacaaaacccactaatgatcccaaccgaagctaaccaaataaatgcagactcatttagggacccaagtactgcttggctagggtcagataatagatggagattagtcattggaagcaagaaaaaccaaactggcctagccattctatatatgagcgaagatttcctacattggaccatggtaaaccacacctttcattcagcaaaggaaaatggaatgtgggagtgcccagattttttcccagtttcaaacagtagcccaattggtcttgacacatcaacgaatggtccggatgttaagcatgtgctcaaggttagcttgtttgatactgctaaagagtactacacaattggaacatataacctagacaaagatatatataaccctgataagggatcagtggagagtgatttgggtttgagatatgattatggtaagttttatgcatcaaaatccttctttgacagtgctaagaaccgtaggatcttgtggggttggagtaatgaatcctcaagtgccaatgatgacatcaagaagggttggtctggactccagacaattccaaggaccattttacttgatgagcctgggaaacaattggtacaatggcccatcgaagaacttgaaaagctgagaacaaagcaggttaggttgccaagaattgtgatagagggaggatcactacatgaagtacttggagtcacagcagcacaggcagatatagaagttacatttgagataagtgattttgaaaaaacagaggtgctggatccaagttggaccgatccacaaattttgtgtagcaaaaaggatgcctcagtttatgggggtctaggaccatttgggttgctggttttggcttcaaagagtttgcaagaatacacagcagtcttttatagaatattcaaatctcacaacaacaaatatgtggtgctcatgtgcagtgatcaaagcaggtcttccttaaacgaaaataatgataagaccacatacggggcctttgtagatgtggatcctgttcatgagaagctatcactcagaagcttgattgatcactctatagtggagagctttggtggagaaggcaaggcgtgcataacagccagggtttatcccacattggctgttgatggttataccagcttatatactttcaattatgggaaggagggtgcaaaaatcacaggaagtgcatggagcatgaggactgcaaagattaatcgatcaagaaaagaagagaatgaatag

Protein Analysis

527

Amino Acids

59.36

Weight (kDa)

5.54

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 970, 1281
AccIII TCCGGA 1 cut(s) 625
AclWI GGATC 9 cut(s) 349, 739, 827, 1021, 1100, 1113, 1115, 1343, 1356
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 1128
AfaI GTAC 5 cut(s) 50, 406, 677, 939, 1029
AfiI CCNNNNNNNGG 4 cut(s) 223, 727, 728, 1329
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 8 cut(s) 117, 278, 585, 962, 1088, 1200, 1243, 1492
AhlI ACTAGT 1 cut(s) 20
AjnI CCWGG 3 cut(s) 220, 922, 1439
AluBI AGCT 7 cut(s) 368, 654, 967, 1366, 1380, 1407, 1479
AluI AGCT 7 cut(s) 368, 654, 967, 1366, 1380, 1407, 1479
Alw21I GWGCWC 2 cut(s) 645, 1272
AlwI GGATC 9 cut(s) 349, 739, 827, 1021, 1100, 1113, 1115, 1343, 1356
Aor13HI TCCGGA 1 cut(s) 625
AoxI GGCC 7 cut(s) 26, 108, 234, 285, 469, 944, 1332
ApaI GGGCCC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 1043
ApoI RAATTY 1 cut(s) 1128
AseI ATTAAT 1 cut(s) 1554
AsuHPI GGTGA 1 cut(s) 84
AvaII GGWCC 6 cut(s) 397, 510, 623, 903, 1116, 1172
BaeGI GKGCMC 2 cut(s) 112, 566
BamHI GGATCC 2 cut(s) 1105, 1348
BanII GRGCYC 1 cut(s) 112
BarI GAAGNNNNNNTAC 2 cut(s) 486, 518
BbsI GAAGAC 1 cut(s) 1287
Bbv12I GWGCWC 2 cut(s) 645, 1272
BbvI GCAGC 1 cut(s) 1055
BccI CCATC 5 cut(s) 60, 175, 426, 956, 1460
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 3 cut(s) 222, 924, 1441
BclI TGATCA 2 cut(s) 1282, 1387
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 5 cut(s) 21, 416, 473, 701, 1169
BfmI CTRYAG 1 cut(s) 1395
BfuAI ACCTGC 2 cut(s) 970, 1281
BisI GCNGC 1 cut(s) 1044
BlsI GCNGC 1 cut(s) 1045
BmcAI AGTACT 3 cut(s) 406, 677, 1029
Bme1390I CCNGG 3 cut(s) 222, 924, 1441
Bme18I GGWCC 6 cut(s) 397, 510, 623, 903, 1116, 1172
BmiI GGNNCC 6 cut(s) 110, 398, 399, 1107, 1333, 1350
BmrFI CCNGG 3 cut(s) 222, 924, 1441
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 3 cut(s) 145, 791, 1138
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 1287
BpmI CTGGAG 1 cut(s) 872
BpuEI CTTGAG 2 cut(s) 629, 832
Bsa29I ATCGAT 1 cut(s) 1558
BsaBI GATNNNNATC 1 cut(s) 1347
BsaJI CCNNGG 6 cut(s) 220, 221, 513, 899, 923, 1440
BsaWI WCCGGW 1 cut(s) 625
Bsc4I CCNNNNNNNGG 4 cut(s) 223, 727, 728, 1329
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 3 cut(s) 253, 472, 578
Bse8I GATNNNNATC 1 cut(s) 1347
BseAI TCCGGA 1 cut(s) 625
BseBI CCWGG 3 cut(s) 222, 924, 1441
BseCI ATCGAT 1 cut(s) 1558
BseDI CCNNGG 6 cut(s) 220, 221, 513, 899, 923, 1440
BseGI GGATG 2 cut(s) 634, 1153
BseJI GATNNNNATC 1 cut(s) 1347
BseLI CCNNNNNNNGG 4 cut(s) 223, 727, 728, 1329
BseMII CTCAG 5 cut(s) 318, 331, 959, 1167, 1387
BseNI ACTGG 3 cut(s) 253, 472, 578
BseSI GKGCMC 2 cut(s) 112, 566
BseXI GCAGC 1 cut(s) 1055
BsgI GTGCAG 1 cut(s) 1297
BshFI GGCC 7 cut(s) 28, 110, 236, 287, 471, 946, 1334
BshVI ATCGAT 1 cut(s) 1558
BsiHKAI GWGCWC 2 cut(s) 645, 1272
BsiSI CCGG 2 cut(s) 233, 626
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 4 cut(s) 223, 727, 728, 1329
BsmFI GGGAC 1 cut(s) 410
BsnI GGCC 7 cut(s) 28, 110, 236, 287, 471, 946, 1334
Bsp120I GGGCCC 1 cut(s) 108
Bsp1286I GDGCHC 4 cut(s) 112, 566, 645, 1272
Bsp13I TCCGGA 1 cut(s) 625
Bsp19I CCATGG 1 cut(s) 513
BspANI GGCC 7 cut(s) 28, 110, 236, 287, 471, 946, 1334
BspCNI CTCAG 5 cut(s) 317, 330, 960, 1166, 1386
BspDI ATCGAT 1 cut(s) 1558
BspEI TCCGGA 1 cut(s) 625
BspHI TCATGA 1 cut(s) 1357
BspLI GGNNCC 6 cut(s) 110, 398, 399, 1107, 1333, 1350
BspMI ACCTGC 2 cut(s) 970, 1281
BspPI GGATC 9 cut(s) 349, 739, 827, 1021, 1100, 1113, 1115, 1343, 1356
BsrFI RCCGGY 1 cut(s) 232
BsrI ACTGG 3 cut(s) 253, 472, 578
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 6 cut(s) 220, 221, 513, 899, 923, 1440
BssT1I CCWWGG 2 cut(s) 513, 899
Bst2UI CCWGG 3 cut(s) 222, 924, 1441
Bst4CI ACNGT 4 cut(s) 191, 590, 803, 815
Bst6I CTCTTC 2 cut(s) 13, 1566
BstAPI GCANNNNNTGC 1 cut(s) 1428
BstC8I GCNNGC 2 cut(s) 234, 1429
BstDEI CTNAG 6 cut(s) 304, 317, 807, 968, 1153, 1373
BstDSI CCRYGG 1 cut(s) 513
BstEII GGTNACC 1 cut(s) 90
BstF5I GGATG 2 cut(s) 634, 1153
BstMWI GCNNNNNNNGC 2 cut(s) 1049, 1428
BstNI CCWGG 3 cut(s) 222, 924, 1441
BstNSI RCATGY 1 cut(s) 641
BstPI GGTNACC 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 220, 922, 1439
BstSFI CTRYAG 1 cut(s) 1395
BstSLI GKGCMC 2 cut(s) 112, 566
BstV1I GCAGC 1 cut(s) 1055
BstV2I GAAGAC 1 cut(s) 1287
BstX2I RGATCY 3 cut(s) 819, 1105, 1348
BstYI RGATCY 3 cut(s) 819, 1105, 1348
Bsu15I ATCGAT 1 cut(s) 1558
BsuRI GGCC 7 cut(s) 28, 110, 236, 287, 471, 946, 1334
BsuTUI ATCGAT 1 cut(s) 1558
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 2 cut(s) 634, 1153
BtsI GCAGTG 1 cut(s) 1285
BtsIMutI CAGTG 4 cut(s) 246, 741, 808, 1285
BveI ACCTGC 2 cut(s) 970, 1281
Cac8I GCNNGC 2 cut(s) 234, 1429
CciI TCATGA 1 cut(s) 1357
Cfr10I RCCGGY 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 1558
Csp6I GTAC 5 cut(s) 49, 405, 676, 938, 1028
CspCI CAANNNNNGTGG 2 cut(s) 1113, 1148
CviAII CATG 9 cut(s) 77, 149, 514, 638, 1022, 1273, 1358, 1530, 1537
CviQI GTAC 5 cut(s) 49, 405, 676, 938, 1028
DdeI CTNAG 6 cut(s) 304, 317, 807, 968, 1153, 1373
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 13, 1566
EarI CTCTTC 2 cut(s) 13, 1566
Eco130I CCWWGG 2 cut(s) 513, 899
Eco24I GRGCYC 1 cut(s) 112
Eco47I GGWCC 6 cut(s) 397, 510, 623, 903, 1116, 1172
Eco91I GGTNACC 1 cut(s) 90
EcoO109I RGGNCCY 2 cut(s) 397, 1332
EcoO65I GGTNACC 1 cut(s) 90
EcoRII CCWGG 3 cut(s) 220, 922, 1439
EcoT14I CCWWGG 2 cut(s) 513, 899
EcoT22I ATGCAT 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 2 cut(s) 513, 899
FaeI CATG 9 cut(s) 80, 152, 517, 641, 1025, 1276, 1361, 1533, 1540
FalI AAGNNNNNCTT 6 cut(s) 394, 426, 638, 670, 1279, 1311
FaqI GGGAC 1 cut(s) 410
FatI CATG 9 cut(s) 76, 148, 513, 637, 1021, 1272, 1357, 1529, 1536
FbaI TGATCA 2 cut(s) 1282, 1387
Fnu4HI GCNGC 1 cut(s) 1044
FokI GGATG 2 cut(s) 641, 1160
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 1044
FspBI CTAG 5 cut(s) 21, 416, 473, 701, 1169
GluI GCNGC 1 cut(s) 1044
GsuI CTGGAG 1 cut(s) 872
HaeIII GGCC 7 cut(s) 28, 110, 236, 287, 471, 946, 1334
HapII CCGG 2 cut(s) 233, 626
Hin1II CATG 9 cut(s) 80, 152, 517, 641, 1025, 1276, 1361, 1533, 1540
HindIII AAGCTT 1 cut(s) 1378
HinfI GANTC 6 cut(s) 142, 252, 386, 842, 885, 1035
HpaII CCGG 2 cut(s) 233, 626
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 49, 520
Hpy188I TCNGA 6 cut(s) 172, 262, 307, 320, 424, 1376
Hpy188III TCNNGA 7 cut(s) 605, 626, 868, 882, 889, 1358, 1563
Hpy8I GTNNAC 2 cut(s) 49, 520
HpyAV CCTTC 5 cut(s) 298, 802, 865, 1412, 1495
HpyCH4III ACNGT 4 cut(s) 191, 590, 803, 815
HpyCH4IV ACGT 2 cut(s) 45, 119
HpyCH4V TGCA 8 cut(s) 383, 782, 1210, 1278, 1431, 1511, 1529, 1547
HpyF10VI GCNNNNNNNGC 2 cut(s) 1049, 1428
HpyF3I CTNAG 6 cut(s) 304, 317, 807, 968, 1153, 1373
HpySE526I ACGT 2 cut(s) 45, 119
Hsp92II CATG 9 cut(s) 80, 152, 517, 641, 1025, 1276, 1361, 1533, 1540
KflI GGGWCCC 1 cut(s) 397
Kpn2I TCCGGA 1 cut(s) 625
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Ksp22I TGATCA 2 cut(s) 1282, 1387
LmnI GCTCC 1 cut(s) 1533
Lsp1109I GCAGC 1 cut(s) 1055
LweI GCATC 3 cut(s) 145, 791, 1138
MaeI CTAG 5 cut(s) 21, 416, 473, 701, 1169
MaeII ACGT 2 cut(s) 45, 119
MaeIII GTNAC 3 cut(s) 90, 1036, 1063
MboII GAAGA 4 cut(s) 506, 965, 1287, 1583
MfeI CAATTG 4 cut(s) 136, 597, 684, 932
MflI RGATCY 3 cut(s) 819, 1105, 1348
MhlI GDGCHC 4 cut(s) 112, 566, 645, 1272
MluCI AATT 8 cut(s) 136, 597, 684, 894, 932, 996, 1128, 1492
MlyI GAGTC 3 cut(s) 380, 879, 1044
MmeI TCCRAC 2 cut(s) 812, 1094
Mph1103I ATGCAT 1 cut(s) 784
MroI TCCGGA 1 cut(s) 625
MroNI GCCGGC 1 cut(s) 232
MseI TTAA 5 cut(s) 186, 330, 633, 1301, 1554
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 2 cut(s) 233, 626
MspR9I CCNGG 3 cut(s) 222, 924, 1441
MunI CAATTG 4 cut(s) 136, 597, 684, 932
MvaI CCWGG 3 cut(s) 222, 924, 1441
MwoI GCNNNNNNNGC 2 cut(s) 1049, 1428
NaeI GCCGGC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 513
NgoMIV GCCGGC 1 cut(s) 232
NlaIII CATG 9 cut(s) 80, 152, 517, 641, 1025, 1276, 1361, 1533, 1540
NlaIV GGNNCC 6 cut(s) 110, 398, 399, 1107, 1333, 1350
NmuCI GTSAC 2 cut(s) 90, 1036
NsiI ATGCAT 1 cut(s) 784
NspI RCATGY 1 cut(s) 641
PagI TCATGA 1 cut(s) 1357
PasI CCCWGGG 1 cut(s) 221
PdiI GCCGGC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 142, 252, 842
PkrI GCNGC 1 cut(s) 1045
PleI GAGTC 3 cut(s) 380, 879, 1043
PpsI GAGTC 3 cut(s) 380, 879, 1043
PpuMI RGGWCCY 1 cut(s) 397
PshBI ATTAAT 1 cut(s) 1554
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 3 cut(s) 220, 922, 1439
PspEI GGTNACC 1 cut(s) 90
PspGI CCWGG 3 cut(s) 220, 922, 1439
PspN4I GGNNCC 6 cut(s) 110, 398, 399, 1107, 1333, 1350
PspOMI GGGCCC 1 cut(s) 108
PspPPI RGGWCCY 1 cut(s) 397
PsuI RGATCY 3 cut(s) 819, 1105, 1348
RsaI GTAC 5 cut(s) 50, 406, 677, 939, 1029
RsaNI GTAC 5 cut(s) 49, 405, 676, 938, 1028
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 5 cut(s) 186, 330, 633, 1301, 1554
SatI GCNGC 1 cut(s) 1044
ScaI AGTACT 3 cut(s) 406, 677, 1029
SchI GAGTC 3 cut(s) 380, 879, 1044
ScrFI CCNGG 3 cut(s) 222, 924, 1441
SduI GDGCHC 4 cut(s) 112, 566, 645, 1272
SfaNI GCATC 3 cut(s) 145, 791, 1138
SfcI CTRYAG 1 cut(s) 1395
SinI GGWCC 6 cut(s) 397, 510, 623, 903, 1116, 1172
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 644, 847
SmoI CTYRAG 2 cut(s) 644, 847
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 8 cut(s) 136, 597, 684, 894, 932, 996, 1128, 1492
SspI AATATT 2 cut(s) 100, 1239
SspMI CTAG 5 cut(s) 21, 416, 473, 701, 1169
StyD4I CCNGG 3 cut(s) 220, 922, 1439
StyI CCWWGG 2 cut(s) 513, 899
TaaI ACNGT 4 cut(s) 191, 590, 803, 815
TaiI ACGT 2 cut(s) 48, 122
TaqI TCGA 2 cut(s) 951, 1558
TaqII GACCGA 1 cut(s) 1133
TasI AATT 8 cut(s) 136, 597, 684, 894, 932, 996, 1128, 1492
TatI WGTACW 3 cut(s) 404, 675, 1027
TfiI GAWTC 3 cut(s) 142, 252, 842
Tru1I TTAA 5 cut(s) 186, 330, 633, 1301, 1554
Tru9I TTAA 5 cut(s) 186, 330, 633, 1301, 1554
TscAI CASTG 4 cut(s) 253, 741, 808, 1285
TseFI GTSAC 2 cut(s) 90, 1036
TseI GCWGC 1 cut(s) 1043
Tsp45I GTSAC 2 cut(s) 90, 1036
TspDTI ATGAA 4 cut(s) 521, 855, 1038, 1346
TspRI CASTG 4 cut(s) 253, 741, 808, 1285
VpaK11BI GGWCC 6 cut(s) 397, 510, 623, 903, 1116, 1172
VspI ATTAAT 1 cut(s) 1554
XapI RAATTY 1 cut(s) 1128
XceI RCATGY 1 cut(s) 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 408
XspI CTAG 5 cut(s) 21, 416, 473, 701, 1169
ZrmI AGTACT 3 cut(s) 406, 677, 1029
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.