Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001901

Physical Location & Seq

Genomic Coordinates Reverse (-)

48849914 .. 48852055

Gene Structure 2142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0383100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGTAATCTTCAATCAACCTGCCAATTCTTCACTCCATTTCCGAGAGAGGGTCAAGAATTCGAAGCTGTATCGGACACTGAACACCACCAAGCTTTCAAGAAACCCAGAGTCTCTAAGGTTGGGTCAGACTCAATGGTTATTGAGAGGAGATATAAGTGGTTGCATTACAAGACCCGACTGTGCAATAACTTCCAACGGGGTGGTTGCCATTATGGTGAGGCATGTCTCTATGCTCACGGCATTGAAGAAATCCGCAACACTTTGGGTAGTTCGGAGAATGAGAAGGGCATGTTGGGTAGGACTGAGTATGCTCGTCACAGAACTTGTGATGAACTTCGACTTTGCAAGTTGTTCTTGAATGAGGGGAAATGCACATATGGAGAGAAATGCCGCTTTCGTCATGTGATTCCGAAAAGCATCAGAGATGAGTCAGTGATCATTTTGACTAGTGGGTCTAAAGGGTCTCAAATTAGTGGCTCTGGGCAATTTGGGGGCAAGAGGTCTCTGGGTTTGGATGTTGACACTAATGGAGTGAGTGGAGGCAGGCATTTTAGGCAGCAAAGCTCTGTTGCAGCTGGGAGAGGGATGCTGAGTAATACCTGCATGGCTAGTGGAAGCTTTGCTCATGGACATGCCGTGCTCAGGAAGCTCTGTGGCTACACTACCACGGAGACTAAACATTTAAAGACTTTTACTACTTCTAGGGAATTGCAAGTTACGGACGGCAACTTCAACTGGAATGAACTTGAGAAAATGAGTCGCATCTATGCTGATTGGATTGAAGAAATTCCTCTTGTACATAGGAAGATGGAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0016020 GO:0016787 GO:0016798 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0080167 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

273

Amino Acids

30.97

Weight (kDa)

9.07

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	57 - 81	6.5e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	114 - 135	6.4e-07	CCCH-type zinc finger
zf-CCCH_DUS3L	PF25585	114 - 135	6e-06	DUS3L CCCH zinc finger domain
zf_CCCH_4	PF18345	116 - 135	6.1e-07	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13790 AT3G13790 AT3G13790 AT3G13790 AT3G13790
fragaria_vesca	FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33602 FvH4_6g33602 FvH4_6g33602
malus_domestica	MD09G1192100.v1.1
prunus_persica	Prupe.3G009500_v2.0.a1 Prupe.3G048300_v2.0.a1 Prupe.3G048300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143501 RchiOBHm_Chr2g0143521
rosa_laevigata	RLG00000020041 RLG00000020043
rosa_multiflora	Rmu_sc0003507.1_g000032 Rmu_sc0005083.1_g000003 Rmu_sc0005083.1_g000014 Rmu_sc0015791.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101770 Rroxscaffold_2G00101800
rosa_rugosa	Rorug02G0382100 Rorug02G0382200 Rorug02G0382200 Rorug02G0382300 Rorug02G0382300 Rorug02G0382600 Rorug02G0382700 Rorug02G0382700 Rorug02G0383000 Rorug02G0383000 Rorug02G0383100
rosa_samantha	Rh2AG435000 Rh2AG435300 Rh2BG442700 Rh2BG442900 Rh2CG421000 Rh2CG421400 Rh2DG452900 Rh2DG453300
rosa_wichuraiana	Rw2G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	454
Acc36I	ACCTGC	2 cut(s)	29, 611
AciI	CCGC	2 cut(s)	256, 394
AcsI	RAATTY	2 cut(s)	59, 789
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	2 cut(s)	50, 645
AgsI	TTSAA	6 cut(s)	14, 100, 248, 361, 736, 785
AhlI	ACTAGT	1 cut(s)	449
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	6 cut(s)	68, 95, 567, 578, 621, 652
AluI	AGCT	6 cut(s)	68, 95, 567, 578, 621, 652
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	5 cut(s)	118, 233, 471, 510, 668
ApeKI	GCWGC	2 cut(s)	559, 575
ApoI	RAATTY	2 cut(s)	59, 789
Asp700I	GAANNNNTTC	1 cut(s)	789
AsuHPI	GGTGA	1 cut(s)	230
AsuII	TTCGAA	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	2 cut(s)	571, 587
BccI	CCATC	1 cut(s)	805
BceAI	ACGGC	3 cut(s)	256, 623, 742
BclI	TGATCA	1 cut(s)	438
BcoDI	GTCTC	5 cut(s)	118, 233, 471, 510, 668
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	3 cut(s)	450, 612, 705
BfuAI	ACCTGC	2 cut(s)	29, 611
BisI	GCNGC	3 cut(s)	394, 560, 576
BlsI	GCNGC	3 cut(s)	395, 561, 577
BmsI	GCATC	3 cut(s)	429, 579, 774
Bpu10I	CCTNAGC	1 cut(s)	644
Bpu14I	TTCGAA	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	770
BsaI	GGTCTC	2 cut(s)	471, 510
BsaJI	CCNNGG	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 645
Bse1I	ACTGG	1 cut(s)	743
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	2 cut(s)	523, 594
BseLI	CCNNNNNNNGG	2 cut(s)	50, 645
BseMII	CTCAG	3 cut(s)	297, 584, 658
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	571, 587
BseYI	CCCAGC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	645
BslI	CCNNNNNNNGG	2 cut(s)	50, 645
BsmAI	GTCTC	5 cut(s)	118, 233, 471, 510, 668
Bso31I	GGTCTC	2 cut(s)	471, 510
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp1407I	TGTACA	1 cut(s)	799
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	2 cut(s)	256, 394
BspCNI	CTCAG	3 cut(s)	298, 585, 657
BspMI	ACCTGC	2 cut(s)	29, 611
BspT104I	TTCGAA	1 cut(s)	63
BspTNI	GGTCTC	2 cut(s)	471, 510
BsrGI	TGTACA	1 cut(s)	799
BsrI	ACTGG	1 cut(s)	743
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	799
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	4 cut(s)	117, 306, 593, 644
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	2 cut(s)	523, 594
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	5 cut(s)	118, 233, 471, 510, 668
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	2 cut(s)	556, 649
BstNSI	RCATGY	3 cut(s)	228, 295, 638
BstV1I	GCAGC	2 cut(s)	571, 587
BstXI	CCANNNNNNTGG	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	523, 594
BtsIMutI	CAGTG	2 cut(s)	78, 441
BveI	ACCTGC	2 cut(s)	29, 611
Cac8I	GCNNGC	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	6 cut(s)	225, 292, 404, 607, 629, 635
CviJI	RGCY	9 cut(s)	68, 95, 480, 567, 578, 611, 621, 652, 660
CviKI_1	RGCY	9 cut(s)	68, 95, 480, 567, 578, 611, 621, 652, 660
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	4 cut(s)	117, 306, 593, 644
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
DraI	TTTAAA	1 cut(s)	687
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
Eco31I	GGTCTC	2 cut(s)	471, 510
EcoRI	GAATTC	1 cut(s)	59
FaeI	CATG	6 cut(s)	228, 295, 407, 610, 632, 638
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	6 cut(s)	224, 291, 403, 606, 628, 634
FauNDI	CATATG	1 cut(s)	379
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	394, 560, 576
FokI	GGATG	2 cut(s)	530, 601
Fsp4HI	GCNGC	3 cut(s)	394, 560, 576
FspBI	CTAG	3 cut(s)	450, 612, 705
GluI	GCNGC	3 cut(s)	394, 560, 576
GsaI	CCCAGC	1 cut(s)	582
Hin1II	CATG	6 cut(s)	228, 295, 407, 610, 632, 638
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	2 cut(s)	93, 619
HinfI	GANTC	5 cut(s)	111, 131, 409, 431, 760
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	7 cut(s)	45, 76, 130, 277, 414, 425, 821
Hpy188III	TCNNGA	4 cut(s)	56, 100, 358, 646
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	7 cut(s)	166, 186, 348, 375, 575, 606, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	556, 649
HpyF3I	CTNAG	4 cut(s)	117, 306, 593, 644
Hsp92II	CATG	6 cut(s)	228, 295, 407, 610, 632, 638
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	1 cut(s)	438
LpnPI	CCDG	9 cut(s)	34, 121, 468, 494, 532, 564, 616, 631, 724
Lsp1109I	GCAGC	2 cut(s)	571, 587
LweI	GCATC	3 cut(s)	429, 579, 774
MaeI	CTAG	3 cut(s)	450, 612, 705
MaeIII	GTNAC	2 cut(s)	317, 718
MalI	GATC	1 cut(s)	440
MboI	GATC	1 cut(s)	438
MboII	GAAGA	4 cut(s)	22, 260, 797, 820
MhlI	GDGCHC	1 cut(s)	645
MluCI	AATT	6 cut(s)	26, 59, 471, 488, 710, 789
MlyI	GAGTC	4 cut(s)	120, 125, 440, 769
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	8 cut(s)	43, 141, 214, 358, 495, 536, 578, 804
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	1 cut(s)	686
MslI	CAYNNNNRTG	2 cut(s)	216, 633
MspA1I	CMGCKG	1 cut(s)	578
MwoI	GCNNNNNNNGC	2 cut(s)	556, 649
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	6 cut(s)	228, 295, 407, 610, 632, 638
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	3 cut(s)	228, 295, 638
NspV	TTCGAA	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	395, 561, 577
PleI	GAGTC	4 cut(s)	119, 125, 439, 768
PpsI	GAGTC	4 cut(s)	119, 125, 439, 768
PspFI	CCCAGC	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
RseI	CAYNNNNRTG	2 cut(s)	216, 633
SaqAI	TTAA	1 cut(s)	686
SatI	GCNGC	3 cut(s)	394, 560, 576
Sau3AI	GATC	1 cut(s)	438
SchI	GAGTC	4 cut(s)	120, 125, 440, 769
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	3 cut(s)	429, 579, 774
SfuI	TTCGAA	1 cut(s)	63
SmiMI	CAYNNNNRTG	2 cut(s)	216, 633
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	6 cut(s)	26, 59, 471, 488, 710, 789
SsiI	CCGC	2 cut(s)	256, 394
SspMI	CTAG	3 cut(s)	450, 612, 705
TaaI	ACNGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	63, 340
TasI	AATT	6 cut(s)	26, 59, 471, 488, 710, 789
TatI	WGTACW	1 cut(s)	799
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	686
Tru9I	TTAA	1 cut(s)	686
TscAI	CASTG	2 cut(s)	85, 441
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	559, 575
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	348, 759
TspGWI	ACGGA	2 cut(s)	686, 737
TspRI	CASTG	2 cut(s)	85, 441
XapI	RAATTY	2 cut(s)	59, 789
XceI	RCATGY	3 cut(s)	228, 295, 638
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	3 cut(s)	450, 612, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.