Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001901

Physical Location & Seq

Genomic Coordinates Forward (+)

26629758 .. 26633010

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33602.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGTTTACAAGAACGTATACCATCATTTTTATCAATATAATCCCGATGGTGTAGCATGGTCACCCAACATTGTTTGGGCACATTCAACATCAACTGATCTTGTCAATTGGACACCACATGATGAGGCCCTCTACCCATCAGAACCGTTTGATATCAATGGTTGTTGGTCAGGGTCTGCTACAATCCTCCCTGGGGAGAAGCCAGCCATGTTCTACACCGGAATCAACTCCCAAACTGAGCAAGTTCAAAACTTGGCATTCCCCAAAAACCTCTCAGACCCTTTTCTTAGAGAATGGATAAAAATCCCACAAAACCCACTAATGATGCCAACCCAAGCTAACCAAATAATCGTAGACTCATTTAGAGACCCAACTACTGCTTGGCTAGGATCAGATAATAGATGGAGATTAGTCATTGGAAGCAGGAAAAACCAAACTGGCCTCGCTATTCTGTATACGAGCGAAGATTTCCTAAACTGGACCATGGCAAGCCACCCCTTTCATTCAGCAAAAGAAAATGGAATGTGGGAGTGCCCAGATTTTTTCCCAGTTTCAAAGAGTACCCCAATTGGTCTTGACACATCAACAAATGGTGCAGACGTTAAACATGTGCTCAAGATTAGCTTGTTTGATATTGCCAAAGAGTACTACACAATTGGGACATATAACCTTGATAAGGATGTCTATATCCCCGATCAGGGATCAGTGGAAAGTGACTCGGGTTTGAGATTTGATTATGGCAAGTTTTATGCATCAAAATCCTTCTTTGACAGTGTTAAGAACCGAAGGATCTTATGGGGCTGGAGTAATGAATCCTCAAGTGCGGAGGATGACATCAAGAAGGGCTGGTCTGGACTCCAGACGATTCCAAGGACCATTTTGCTAGATAAGTCTGGGAAACAATTGGTCCAATGGCCCATTGAAGAACTTGAAAAGCTGAGAACAGAACATGTCAAGTTACCAAGCTCTTTGATTAAGGGAGGATCACTACATGAAGTACTTGGAGTCGCAACAACACAAGCAGATGTTGAAGTTACATTTGAGATAAGTAATTTTGAGAAAGCAGAGGTGCTAGATCAAAGTTGGACGGATCCACAAATTCTATGTAGCAATAAGGATGCCTCAGTTGATGGGAGTCTAGGACCATTCGGGTTGCTGGTTTTGGCTTCAGAGGGTTTGCAAGAATACACAGCAGTCTTTTATAGAATATACAAATCTCACAACAACAAATATGTGGTGCTCATGTGCAGTGATCAAAGCAGGTCTTCCTTAAATGAAAATAATGATAAGACCACATACGGGGCTTTTGTAAATGTTGATCCTGTTCATGAGAAGCTATCACTCAGAAGCTTGATTGATCATTCTATAGTGGAGAGCTTTGGTGGAGAAGGCAAAGTGTGCATAACAGCCCGAGTTTATCCCACATTGGTTGTAGATGGTGATACCCGCTTATATGCTTTCAATTACGGGAGAGAGAGTGTAGAAATCTCAGGAAGTGCGTGGAGTATGGAAACCGCAATGATTAACCGATCAAGAGAAGAAGAATATGATCGAACAGAAGAGAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0016020 GO:0016787 GO:0016798 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0080167 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

524

Amino Acids

59.13

Weight (kDa)

5.0

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_32N	PF00251	1 - 306	1.4e-90	Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C	PF08244	309 - 500	1e-25	Glycosyl hydrolases family 32 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13790 AT3G13790 AT3G13790 AT3G13790 AT3G13790
fragaria_vesca	FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33602 FvH4_6g33602 FvH4_6g33602
malus_domestica	MD09G1192100.v1.1
prunus_persica	Prupe.3G009500_v2.0.a1 Prupe.3G048300_v2.0.a1 Prupe.3G048300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143501 RchiOBHm_Chr2g0143521
rosa_laevigata	RLG00000020041 RLG00000020043
rosa_multiflora	Rmu_sc0003507.1_g000032 Rmu_sc0005083.1_g000003 Rmu_sc0005083.1_g000014 Rmu_sc0015791.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101770 Rroxscaffold_2G00101800
rosa_rugosa	Rorug02G0382100 Rorug02G0382200 Rorug02G0382200 Rorug02G0382300 Rorug02G0382300 Rorug02G0382600 Rorug02G0382700 Rorug02G0382700 Rorug02G0383000 Rorug02G0383000 Rorug02G0383100
rosa_samantha	Rh2AG435000 Rh2AG435300 Rh2BG442700 Rh2BG442900 Rh2CG421000 Rh2CG421400 Rh2DG452900 Rh2DG453300
rosa_wichuraiana	Rw2G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1251
AccI	GTMKAC	3 cut(s)	18, 354, 455
AciI	CCGC	3 cut(s)	824, 1447, 1515
AclWI	GGATC	7 cut(s)	397, 709, 797, 991, 1085, 1098, 1313
AcsI	RAATTY	1 cut(s)	1098
AcuI	CTGAAG	1 cut(s)	1152
AfaI	GTAC	3 cut(s)	562, 647, 999
AfiI	CCNNNNNNNGG	5 cut(s)	193, 676, 697, 698, 1299
AflIII	ACRYGT	2 cut(s)	607, 949
AgsI	TTSAA	7 cut(s)	87, 248, 555, 923, 932, 1031, 1462
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	7 cut(s)	338, 624, 937, 966, 1336, 1350, 1377
AluI	AGCT	7 cut(s)	338, 624, 937, 966, 1336, 1350, 1377
Alw21I	GWGCWC	2 cut(s)	615, 1242
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	7 cut(s)	397, 709, 797, 991, 1085, 1098, 1313
AlwNI	CAGNNNCTG	1 cut(s)	176
Ama87I	CYCGRG	2 cut(s)	718, 1410
AoxI	GGCC	3 cut(s)	126, 439, 914
ApoI	RAATTY	1 cut(s)	1098
AspS9I	GGNCC	6 cut(s)	127, 480, 873, 907, 915, 1142
AsuHPI	GGTGA	2 cut(s)	54, 1451
AvaI	CYCGRG	2 cut(s)	718, 1410
AvaII	GGWCC	4 cut(s)	480, 873, 907, 1142
BaeGI	GKGCMC	2 cut(s)	82, 536
BamHI	GGATCC	1 cut(s)	1090
BbsI	GAAGAC	1 cut(s)	1257
Bbv12I	GWGCWC	2 cut(s)	615, 1242
BccI	CCATC	6 cut(s)	30, 41, 145, 396, 1124, 1430
BciT130I	CCWGG	1 cut(s)	192
BclI	TGATCA	2 cut(s)	1252, 1357
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	4 cut(s)	386, 884, 1073, 1139
BfmI	CTRYAG	1 cut(s)	1365
BfuAI	ACCTGC	1 cut(s)	1251
BmcAI	AGTACT	2 cut(s)	647, 999
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	4 cut(s)	480, 873, 907, 1142
BmeT110I	CYCGRG	2 cut(s)	718, 1410
BmgT120I	GGNCC	6 cut(s)	127, 480, 873, 907, 915, 1142
BmiI	GGNNCC	1 cut(s)	1092
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	3 cut(s)	315, 761, 1108
BmuI	ACTGGG	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	1257
BpmI	CTGGAG	2 cut(s)	823, 842
BpuEI	CTTGAG	2 cut(s)	599, 802
BsaBI	GATNNNNATC	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	4 cut(s)	190, 191, 483, 869
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	1462, 1492
Bsc4I	CCNNNNNNNGG	5 cut(s)	193, 676, 697, 698, 1299
Bse1I	ACTGG	3 cut(s)	442, 482, 548
Bse3DI	GCAATG	1 cut(s)	1524
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	4 cut(s)	190, 191, 483, 869
BseGI	GGATG	3 cut(s)	685, 835, 1123
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	5 cut(s)	193, 676, 697, 698, 1299
BseMI	GCAATG	1 cut(s)	1524
BseMII	CTCAG	6 cut(s)	228, 288, 929, 1137, 1357, 1503
BseNI	ACTGG	3 cut(s)	442, 482, 548
BseSI	GKGCMC	2 cut(s)	82, 536
BsgI	GTGCAG	2 cut(s)	615, 1267
BshFI	GGCC	3 cut(s)	128, 441, 916
BsiHKAI	GWGCWC	2 cut(s)	615, 1242
BsiHKCI	CYCGRG	2 cut(s)	718, 1410
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	5 cut(s)	193, 676, 697, 698, 1299
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	128, 441, 916
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	2 cut(s)	718, 1410
Bsp1286I	GDGCHC	4 cut(s)	82, 536, 615, 1242
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	3 cut(s)	824, 1447, 1515
BspANI	GGCC	3 cut(s)	128, 441, 916
BspCNI	CTCAG	6 cut(s)	229, 287, 930, 1136, 1356, 1502
BspHI	TCATGA	1 cut(s)	1327
BspLI	GGNNCC	1 cut(s)	1092
BspMI	ACCTGC	1 cut(s)	1251
BspPI	GGATC	7 cut(s)	397, 709, 797, 991, 1085, 1098, 1313
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	1524
BsrI	ACTGG	3 cut(s)	442, 482, 548
BssECI	CCNNGG	4 cut(s)	190, 191, 483, 869
BssNAI	GTATAC	2 cut(s)	19, 456
BssT1I	CCWWGG	2 cut(s)	483, 869
Bst1107I	GTATAC	2 cut(s)	19, 456
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	147, 773
Bst6I	CTCTTC	1 cut(s)	1554
BstAPI	GCANNNNNTGC	1 cut(s)	1398
BstC8I	GCNNGC	2 cut(s)	204, 490
BstDEI	CTNAG	7 cut(s)	237, 274, 287, 938, 1123, 1343, 1489
BstDSI	CCRYGG	1 cut(s)	483
BstEII	GGTNACC	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	674
BstF5I	GGATG	3 cut(s)	685, 835, 1123
BstMAI	GTCTC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	1 cut(s)	1398
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	2 cut(s)	611, 953
BstPI	GGTNACC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	1365
BstSLI	GKGCMC	2 cut(s)	82, 536
BstV2I	GAAGAC	1 cut(s)	1257
BstX2I	RGATCY	2 cut(s)	789, 1090
BstYI	RGATCY	2 cut(s)	789, 1090
BstZ17I	GTATAC	2 cut(s)	19, 456
BsuRI	GGCC	3 cut(s)	128, 441, 916
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	685, 835, 1123
BtsI	GCAGTG	1 cut(s)	1255
BtsIMutI	CAGTG	3 cut(s)	711, 778, 1255
BveI	ACCTGC	1 cut(s)	1251
Cac8I	GCNNGC	2 cut(s)	204, 490
CaiI	CAGNNNCTG	1 cut(s)	176
CciI	TCATGA	1 cut(s)	1327
Cfr13I	GGNCC	6 cut(s)	127, 480, 873, 907, 915, 1142
Csp6I	GTAC	3 cut(s)	561, 646, 998
CspCI	CAANNNNNGTGG	2 cut(s)	1411, 1446
CviAII	CATG	9 cut(s)	57, 119, 208, 484, 608, 950, 992, 1243, 1328
CviQI	GTAC	3 cut(s)	561, 646, 998
DdeI	CTNAG	7 cut(s)	237, 274, 287, 938, 1123, 1343, 1489
Eam1104I	CTCTTC	1 cut(s)	1554
EarI	CTCTTC	1 cut(s)	1554
Eco130I	CCWWGG	2 cut(s)	483, 869
Eco31I	GGTCTC	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	4 cut(s)	480, 873, 907, 1142
Eco57I	CTGAAG	1 cut(s)	1152
Eco88I	CYCGRG	2 cut(s)	718, 1410
Eco91I	GGTNACC	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	674
EcoO109I	RGGNCCY	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	190
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	2 cut(s)	483, 869
EcoT22I	ATGCAT	1 cut(s)	754
ErhI	CCWWGG	2 cut(s)	483, 869
FaeI	CATG	9 cut(s)	60, 122, 211, 487, 611, 953, 995, 1246, 1331
FalI	AAGNNNNNCTT	4 cut(s)	608, 640, 1249, 1281
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	9 cut(s)	56, 118, 207, 483, 607, 949, 991, 1242, 1327
FauI	CCCGC	1 cut(s)	1454
FbaI	TGATCA	2 cut(s)	1252, 1357
FblI	GTMKAC	3 cut(s)	18, 354, 455
FokI	GGATG	3 cut(s)	692, 842, 1130
FspBI	CTAG	4 cut(s)	386, 884, 1073, 1139
GsuI	CTGGAG	2 cut(s)	823, 842
HaeIII	GGCC	3 cut(s)	128, 441, 916
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	9 cut(s)	60, 122, 211, 487, 611, 953, 995, 1246, 1331
HindIII	AAGCTT	1 cut(s)	1348
HinfI	GANTC	8 cut(s)	222, 356, 716, 812, 855, 865, 1005, 1135
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	2 cut(s)	54, 1451
Hpy166II	GTNNAC	4 cut(s)	7, 19, 355, 456
Hpy188I	TCNGA	5 cut(s)	142, 277, 394, 1171, 1346
Hpy188III	TCNNGA	9 cut(s)	44, 575, 616, 838, 852, 859, 1328, 1491, 1533
Hpy8I	GTNNAC	4 cut(s)	7, 19, 355, 456
HpyAV	CCTTC	4 cut(s)	772, 780, 835, 1382
HpyCH4III	ACNGT	2 cut(s)	147, 773
HpyCH4IV	ACGT	2 cut(s)	15, 600
HpyCH4V	TGCA	5 cut(s)	596, 752, 1180, 1248, 1401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1398
HpyF3I	CTNAG	7 cut(s)	237, 274, 287, 938, 1123, 1343, 1489
HpySE526I	ACGT	2 cut(s)	15, 600
Hsp92II	CATG	9 cut(s)	60, 122, 211, 487, 611, 953, 995, 1246, 1331
Ksp22I	TGATCA	2 cut(s)	1252, 1357
LweI	GCATC	3 cut(s)	315, 761, 1108
MaeI	CTAG	4 cut(s)	386, 884, 1073, 1139
MaeII	ACGT	2 cut(s)	15, 600
MaeIII	GTNAC	4 cut(s)	60, 713, 957, 1033
MboII	GAAGA	6 cut(s)	476, 935, 1257, 1550, 1553, 1571
MfeI	CAATTG	4 cut(s)	106, 567, 654, 902
MflI	RGATCY	2 cut(s)	789, 1090
MhlI	GDGCHC	4 cut(s)	82, 536, 615, 1242
MluCI	AATT	7 cut(s)	106, 567, 654, 902, 1051, 1098, 1462
MlyI	GAGTC	5 cut(s)	350, 710, 849, 1014, 1144
MmeI	TCCRAC	1 cut(s)	1064
Mph1103I	ATGCAT	1 cut(s)	754
MseI	TTAA	5 cut(s)	603, 777, 975, 1271, 1524
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	192
MunI	CAATTG	4 cut(s)	106, 567, 654, 902
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	1398
NcoI	CCATGG	1 cut(s)	483
NlaIII	CATG	9 cut(s)	60, 122, 211, 487, 611, 953, 995, 1246, 1331
NlaIV	GGNNCC	1 cut(s)	1092
NmuCI	GTSAC	2 cut(s)	60, 713
NsiI	ATGCAT	1 cut(s)	754
NspI	RCATGY	2 cut(s)	611, 953
PagI	TCATGA	1 cut(s)	1327
PasI	CCCWGGG	1 cut(s)	191
PciI	ACATGT	2 cut(s)	607, 949
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	222, 812, 865
PleI	GAGTC	5 cut(s)	350, 710, 849, 1013, 1143
PpsI	GAGTC	5 cut(s)	350, 710, 849, 1013, 1143
PscI	ACATGT	2 cut(s)	607, 949
Psp6I	CCWGG	1 cut(s)	190
PspEI	GGTNACC	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	1 cut(s)	1092
PspPI	GGNCC	6 cut(s)	127, 480, 873, 907, 915, 1142
PstNI	CAGNNNCTG	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	789, 1090
RsaI	GTAC	3 cut(s)	562, 647, 999
RsaNI	GTAC	3 cut(s)	561, 646, 998
SaqAI	TTAA	5 cut(s)	603, 777, 975, 1271, 1524
Sau96I	GGNCC	6 cut(s)	127, 480, 873, 907, 915, 1142
ScaI	AGTACT	2 cut(s)	647, 999
SchI	GAGTC	5 cut(s)	350, 710, 849, 1014, 1144
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	4 cut(s)	82, 536, 615, 1242
SfaNI	GCATC	3 cut(s)	315, 761, 1108
SfcI	CTRYAG	1 cut(s)	1365
SinI	GGWCC	4 cut(s)	480, 873, 907, 1142
SmlI	CTYRAG	2 cut(s)	614, 817
SmoI	CTYRAG	2 cut(s)	614, 817
Sse9I	AATT	7 cut(s)	106, 567, 654, 902, 1051, 1098, 1462
SsiI	CCGC	3 cut(s)	824, 1447, 1515
SspMI	CTAG	4 cut(s)	386, 884, 1073, 1139
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	2 cut(s)	483, 869
TaaI	ACNGT	2 cut(s)	147, 773
TaiI	ACGT	2 cut(s)	18, 603
TaqI	TCGA	1 cut(s)	1552
TasI	AATT	7 cut(s)	106, 567, 654, 902, 1051, 1098, 1462
TatI	WGTACW	2 cut(s)	645, 997
TfiI	GAWTC	3 cut(s)	222, 812, 865
Tru1I	TTAA	5 cut(s)	603, 777, 975, 1271, 1524
Tru9I	TTAA	5 cut(s)	603, 777, 975, 1271, 1524
TscAI	CASTG	3 cut(s)	711, 778, 1255
TseFI	GTSAC	2 cut(s)	60, 713
Tsp45I	GTSAC	2 cut(s)	60, 713
TspDTI	ATGAA	5 cut(s)	491, 825, 1008, 1290, 1316
TspGWI	ACGGA	1 cut(s)	1103
TspRI	CASTG	3 cut(s)	711, 778, 1255
VpaK11BI	GGWCC	4 cut(s)	480, 873, 907, 1142
XagI	CCTNNNNNAGG	1 cut(s)	674
XapI	RAATTY	1 cut(s)	1098
XceI	RCATGY	2 cut(s)	611, 953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	378
XmiI	GTMKAC	3 cut(s)	18, 354, 455
XspI	CTAG	4 cut(s)	386, 884, 1073, 1139
ZrmI	AGTACT	2 cut(s)	647, 999
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.