Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001901

Physical Location & Seq

Genomic Coordinates Forward (+)

48805940 .. 48809046

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0382600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTATGGGAGAAAAGCCAGCCAATTGGTCAAAGAAATTGCAAGCGGCGAAAAGGGGCAGCTCACACCTTTCAGTAGTGACCTATTTGATGAAGTAATTGAAGAATGTAAACAGCATTATCATGAGCTTGAATGCTTGATAAGGAGAATGGAGGAACAAGGATTGAATGTCGAGACAGCTAAAAATGAGGATCACTATGGGGCACTCATCCACCACCTCTCTTTAGTTCGCAACAAACGCTGTTTGATGGCATACCTGTACAACCGAGCAGAAATTTTACGAGCTCTGATGTGGAAGGTAGGGTCTGTAATTCCTGAAGAAATAAAAGAGAAACTCAGCTACTCAGAGAAAGAGTACATTACAAAACATTCAGCATCTTTAAAAAAATATATGGCAAGTGTGGAACTCGACTTGGAAGTGGATATGGTGCCGCCGAAAGATCCCTACATCAAGGTGAGAGTTCTTGATGACATGGGTGGAGAGATACTACTCAGCGATGACAAGAAAGCAAATTTTAGTCGTCACTCAATGCATTTTCTTAAACGAACTGATGCCGAACAGCTCATCTCACAGGGCAAGATGGAGGAGCTCAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0016020 GO:0016787 GO:0016798 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0080167 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

199

Amino Acids

23.09

Weight (kDa)

5.94

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sld5	PF05916	62 - 134	1e-13	GINS complex protein helical bundle domain
PSF1_C	PF24997	146 - 198	4.6e-29	PSF1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13790 AT3G13790 AT3G13790 AT3G13790 AT3G13790
fragaria_vesca	FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33602 FvH4_6g33602 FvH4_6g33602
malus_domestica	MD09G1192100.v1.1
prunus_persica	Prupe.3G009500_v2.0.a1 Prupe.3G048300_v2.0.a1 Prupe.3G048300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143501 RchiOBHm_Chr2g0143521
rosa_laevigata	RLG00000020041 RLG00000020043
rosa_multiflora	Rmu_sc0003507.1_g000032 Rmu_sc0005083.1_g000003 Rmu_sc0005083.1_g000014 Rmu_sc0015791.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101770 Rroxscaffold_2G00101800
rosa_rugosa	Rorug02G0382100 Rorug02G0382200 Rorug02G0382200 Rorug02G0382300 Rorug02G0382300 Rorug02G0382600 Rorug02G0382700 Rorug02G0382700 Rorug02G0383000 Rorug02G0383000 Rorug02G0383100
rosa_samantha	Rh2AG435000 Rh2AG435300 Rh2BG442700 Rh2BG442900 Rh2CG421000 Rh2CG421400 Rh2DG452900 Rh2DG453300
rosa_wichuraiana	Rw2G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AciI	CCGC	2 cut(s)	45, 431
AclWI	GGATC	2 cut(s)	198, 434
AcsI	RAATTY	2 cut(s)	273, 511
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	2 cut(s)	260, 356
AgsI	TTSAA	3 cut(s)	101, 131, 166
AluBI	AGCT	7 cut(s)	61, 127, 179, 284, 339, 562, 589
AluI	AGCT	7 cut(s)	61, 127, 179, 284, 339, 562, 589
Alw21I	GWGCWC	2 cut(s)	286, 591
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	198, 434
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	273, 511
AsuHPI	GGTGA	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	2 cut(s)	286, 591
Bbv12I	GWGCWC	2 cut(s)	286, 591
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	241, 574
BcoDI	GTCTC	1 cut(s)	167
BisI	GCNGC	3 cut(s)	46, 59, 431
BlsI	GCNGC	3 cut(s)	47, 60, 432
BmiI	GGNNCC	1 cut(s)	429
BmsI	GCATC	2 cut(s)	383, 541
BseGI	GGATG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	349, 357, 505
BseRI	GAGGAG	1 cut(s)	599
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	286, 591
BsmAI	GTCTC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	205, 286, 591
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	190, 439
BspACI	CCGC	2 cut(s)	45, 431
BspCNI	CTCAG	3 cut(s)	348, 356, 504
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	2 cut(s)	198, 434
BspT107I	GGYRCC	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	258
BssMI	GATC	2 cut(s)	190, 439
BstAUI	TGTACA	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	19, 43
BstDEI	CTNAG	3 cut(s)	335, 343, 491
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	193, 442
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	190, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	439
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	19, 43
CciI	TCATGA	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	259, 355
CviAII	CATG	2 cut(s)	122, 472
CviJI	RGCY	9 cut(s)	17, 21, 61, 127, 179, 284, 339, 562, 589
CviKI_1	RGCY	9 cut(s)	17, 21, 61, 127, 179, 284, 339, 562, 589
CviQI	GTAC	2 cut(s)	259, 355
DdeI	CTNAG	3 cut(s)	335, 343, 491
DpnI	GATC	2 cut(s)	192, 441
DpnII	GATC	2 cut(s)	190, 439
DraI	TTTAAA	1 cut(s)	381
Ecl136II	GAGCTC	2 cut(s)	284, 589
Eco24I	GRGCYC	2 cut(s)	286, 591
Eco53kI	GAGCTC	2 cut(s)	284, 589
Eco57I	CTGAAG	1 cut(s)	336
EcoICRI	GAGCTC	2 cut(s)	284, 589
EcoT22I	ATGCAT	1 cut(s)	534
EcoT38I	GRGCYC	2 cut(s)	286, 591
FaeI	CATG	2 cut(s)	125, 475
FaiI	YATR	8 cut(s)	6, 123, 198, 253, 390, 392, 425, 473
FatI	CATG	2 cut(s)	121, 471
Fnu4HI	GCNGC	3 cut(s)	46, 59, 431
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	2 cut(s)	286, 591
Fsp4HI	GCNGC	3 cut(s)	46, 59, 431
GluI	GCNGC	3 cut(s)	46, 59, 431
Hin1II	CATG	2 cut(s)	125, 475
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	288, 346
Hpy188III	TCNNGA	4 cut(s)	122, 172, 314, 464
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	41, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	3 cut(s)	335, 343, 491
Hsp92II	CATG	2 cut(s)	125, 475
Kzo9I	GATC	2 cut(s)	190, 439
LmnI	GCTCC	1 cut(s)	586
LpnPI	CCDG	4 cut(s)	31, 269, 327, 557
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	2 cut(s)	383, 541
MaeIII	GTNAC	2 cut(s)	77, 521
MalI	GATC	2 cut(s)	192, 441
MboI	GATC	2 cut(s)	190, 439
MboII	GAAGA	2 cut(s)	113, 329
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	3 cut(s)	205, 286, 591
MluCI	AATT	6 cut(s)	23, 36, 96, 273, 309, 511
MnlI	CCTC	4 cut(s)	145, 181, 227, 577
Mph1103I	ATGCAT	1 cut(s)	534
MseI	TTAA	2 cut(s)	380, 540
MslI	CAYNNNNRTG	2 cut(s)	120, 452
MunI	CAATTG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	2 cut(s)	190, 439
NlaIII	CATG	2 cut(s)	125, 475
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	2 cut(s)	77, 521
NsiI	ATGCAT	1 cut(s)	534
PagI	TCATGA	1 cut(s)	121
PctI	GAATGC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	47, 60, 432
Psp124BI	GAGCTC	2 cut(s)	286, 591
PspN4I	GGNNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	260, 356
RsaNI	GTAC	2 cut(s)	259, 355
RseI	CAYNNNNRTG	2 cut(s)	120, 452
SacI	GAGCTC	2 cut(s)	286, 591
SaqAI	TTAA	2 cut(s)	380, 540
SatI	GCNGC	3 cut(s)	46, 59, 431
Sau3AI	GATC	2 cut(s)	190, 439
SduI	GDGCHC	3 cut(s)	205, 286, 591
SfaNI	GCATC	2 cut(s)	383, 541
SmiMI	CAYNNNNRTG	2 cut(s)	120, 452
Sse9I	AATT	6 cut(s)	23, 36, 96, 273, 309, 511
SsiI	CCGC	2 cut(s)	45, 431
SstI	GAGCTC	2 cut(s)	286, 591
TaqI	TCGA	2 cut(s)	171, 408
TasI	AATT	6 cut(s)	23, 36, 96, 273, 309, 511
TatI	WGTACW	2 cut(s)	258, 354
TauI	GCSGC	2 cut(s)	48, 433
Tru1I	TTAA	2 cut(s)	380, 540
Tru9I	TTAA	2 cut(s)	380, 540
TseFI	GTSAC	2 cut(s)	77, 521
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	2 cut(s)	77, 521
TspDTI	ATGAA	1 cut(s)	105
XapI	RAATTY	2 cut(s)	273, 511
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.