FvH4_6g33590

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
26600997 .. 26605324
4328 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33590.t3

Sequence Viewer

Length: 1737 bp
ATGATGATATTCTCTCTTTGGCAATTCTGCCTTCTTTCACTTTTGCTTTCTTATGGTGTTATTGAGCTTCAAGCTTCCCACCATGTCTATAGCAACCTTCAAACTACCCAACTTACTTCAACACATCCCCAAGCTAAAGACCCTTACAGAACCGGTTATCATTTCCAGCCTCGCAAGAATTGGATCAATGATCCAAATGGGCCACTGATTTACAAGGGAATTTACCATCTATTCTACCAATACAATCCCAGCAGTGTAGTTTGGGGTAACATTGTTTGGGCACATTCCACATCCACTGATCTCGTCAACTGGATTCCACATGAAGCTGCTATCTACCCATCAATTCTCTCTGATATCAATGGCTGTTGGTCGGGGTCCGTCACAATCCTTCCCGGCGGAAAGCCGGCCATTTTATACACCGGAATCAACCCCGACAAAGAACAAGTTCAAAACTTGGCATTTCCAAAAAACCTTTCCGACCCGTTTCTTAGGGAGTGGGTTAAAGTCCCACAAAACCCCCTAATGGCTCCAACTCAAGCTAACCAAATCAATGCCAGCTCATTTAGGGATCCTACCACTGCTTGGCTAGGGCCAGATAAGAGATGGAGGTTGATCATTGGAAGCAAAAGGAACCAAAGGGGACTAGCTATCCTCTACAGAAGCAAAGATTTCATGCATTGGACTAAGGCTAAACATCCATTATATTCAACACCGAAAAATGGTATGTGGGAATGCCCTGATTTTTTCCCAGTTTCGAAGACTAAGTTGCTTGGTCTTGACACATCTGCAATTGGTCCGGATGTTAAGCATGTACTTAAAGTTAGCTTGGACAACACTAGGAAAGAGTACTACACAATTGGTACATATAATGTGAGCAAGGATATCTATATCCCAGATGATGGATCAATTGAGAGTGATTCTGGTTTGAGATATGATTATGGTAAGTTTTATGCTTCAAAAACCTTCTTTGACAGTGCAAAGAACCGCCGAATCTTGTGGGGTTGGATCAATGAGTCCTCAAGTGTTAGTGGTGATATCAAGAAAGGATGGTCTGGACTCCAGGCAATTCCAAGGACTATTGTGCTCGACAAATCTGGAAAGCAATTGGTGCAATGGCCTGTAGTAGAGCTTGAGAAACTTAGAACAAAGGAGGTTAAGTTACCAAGCACTCTCCTTAAAGGAGGATCACTTCATGAAGTCATTGGTGTCACAGCAGCACAGGCCGATGTAGATGTCGCATTTGAGATAAGTGATCTCAAGAAAGCAGAAGTTACGGATCCAAGTTGGACTAATGCACAACTTTTGTGTAGTAAAAAGGGTACCTCAGTGAAAGGGGCTCTAGGACCATTTGGATTGTTGGCATTTGTTTCAAAGGATTTGAAAGAAAAGACAGCAATCTTCTATAGAATTTTCAAGTCTCACAACAATAACAACAAATATGTGGTTCTTATGTGCAGTGACCAAAGCAGGTCTTCTCTAAACCCAGATAATGATATGACAACTTATGGAGCATTTGTAAATGTGGATCCTCTTTATGAGAAGTTGTCACTGAGAAGCTTGATTGATCACTCTATAGTGGAGAGTTTTGGTGGAAAAGGCAAGGCGTGCATAACAGCTAGGGTGTATCCTACATTGGCTGTTGATGGTGATACCCATTTATATGCTTTCAATTATGGAAGTGAGAGTGTCAAAATCGCAGGAAGTGCATGGAGCATGAAAACTGCTAAAATCAATTGA

Protein Analysis

579

Amino Acids

64.79

Weight (kDa)

9.18

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 54 - 373 9.5e-105 Glycosyl hydrolases family 32 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1458
Acc65I GGTACC 1 cut(s) 1319
AccB1I GGYRCC 1 cut(s) 1319
AccB7I CCANNNNNTGG 2 cut(s) 582, 899
AccIII TCCGGA 1 cut(s) 796
AciI CCGC 2 cut(s) 396, 985
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 2 cut(s) 219, 1407
AfaI GTAC 4 cut(s) 813, 848, 862, 1321
AfiI CCNNNNNNNGG 4 cut(s) 523, 582, 719, 899
AgeI ACCGGT 1 cut(s) 152
AjnI CCWGG 1 cut(s) 1059
AjuI GAANNNNNNNTTGG 2 cut(s) 457, 489
Alw21I GWGCWC 1 cut(s) 1086
Alw26I GTCTC 1 cut(s) 1422
Aor13HI TCCGGA 1 cut(s) 796
AoxI GGCC 5 cut(s) 200, 405, 590, 1115, 1221
ApeKI GCWGC 2 cut(s) 326, 1214
ApoI RAATTY 2 cut(s) 219, 1407
AsiGI ACCGGT 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 444
Asp718I GGTACC 1 cut(s) 1319
AspS9I GGNCC 5 cut(s) 200, 375, 590, 794, 1343
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 2 cut(s) 1043, 1658
AsuII TTCGAA 1 cut(s) 755
AvaII GGWCC 3 cut(s) 375, 794, 1343
BaeGI GKGCMC 1 cut(s) 283
BaeI ACNNNNGTAYC 2 cut(s) 1311, 1344
BamHI GGATCC 3 cut(s) 568, 1276, 1525
BanI GGYRCC 1 cut(s) 1319
BanII GRGCYC 1 cut(s) 1339
BbsI GAAGAC 2 cut(s) 764, 1464
Bbv12I GWGCWC 1 cut(s) 1086
BbvI GCAGC 2 cut(s) 313, 1226
BccI CCATC 6 cut(s) 234, 346, 597, 893, 1041, 1637
BciT130I CCWGG 1 cut(s) 1061
BciVI GTATCC 1 cut(s) 1635
BclI TGATCA 2 cut(s) 612, 1564
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 1422
BfaI CTAG 5 cut(s) 587, 644, 837, 1340, 1617
BfmI CTRYAG 5 cut(s) 88, 655, 1119, 1402, 1572
BfuAI ACCTGC 1 cut(s) 1458
BfuI GTATCC 1 cut(s) 1635
BisI GCNGC 2 cut(s) 327, 1215
BlsI GCNGC 2 cut(s) 328, 1216
BmcAI AGTACT 1 cut(s) 848
Bme1390I CCNGG 2 cut(s) 393, 1061
Bme18I GGWCC 3 cut(s) 375, 794, 1343
BmgT120I GGNCC 5 cut(s) 200, 375, 590, 794, 1343
BmiI GGNNCC 7 cut(s) 376, 528, 570, 632, 1278, 1321, 1527
BmrFI CCNGG 2 cut(s) 393, 1061
BmrI ACTGGG 1 cut(s) 743
BmuI ACTGGG 1 cut(s) 743
BpiI GAAGAC 2 cut(s) 764, 1464
BpmI CTGGAG 1 cut(s) 1043
Bpu14I TTCGAA 1 cut(s) 755
BpuEI CTTGAG 4 cut(s) 519, 1003, 1151, 1241
BpuMI CCSGG 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 1070
BsaWI WCCGGW 3 cut(s) 152, 419, 796
BsaXI ACNNNNNCTCC 4 cut(s) 1142, 1172, 1500, 1530
Bsc4I CCNNNNNNNGG 4 cut(s) 523, 582, 719, 899
Bse118I RCCGGY 2 cut(s) 152, 403
Bse1I ACTGG 2 cut(s) 314, 749
Bse3DI GCAATG 1 cut(s) 1118
BseAI TCCGGA 1 cut(s) 796
BseBI CCWGG 1 cut(s) 1061
BseDI CCNNGG 1 cut(s) 1070
BseGI GGATG 5 cut(s) 124, 290, 694, 805, 1052
BseLI CCNNNNNNNGG 4 cut(s) 523, 582, 719, 899
BseMI GCAATG 1 cut(s) 1118
BseMII CTCAG 2 cut(s) 1338, 1541
BseNI ACTGG 2 cut(s) 314, 749
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 2 cut(s) 313, 1226
BseYI CCCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 1474
BshFI GGCC 5 cut(s) 202, 407, 592, 1117, 1223
BshNI GGYRCC 1 cut(s) 1319
BshTI ACCGGT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 1086
BsiSI CCGG 5 cut(s) 153, 393, 404, 420, 797
BslFI GGGAC 2 cut(s) 491, 654
BslI CCNNNNNNNGG 4 cut(s) 523, 582, 719, 899
BsmAI GTCTC 1 cut(s) 1422
BsmFI GGGAC 2 cut(s) 491, 654
BsmI GAATGC 1 cut(s) 737
BsnI GGCC 5 cut(s) 202, 407, 592, 1117, 1223
Bsp119I TTCGAA 1 cut(s) 755
Bsp1286I GDGCHC 3 cut(s) 283, 1086, 1339
Bsp13I TCCGGA 1 cut(s) 796
BspACI CCGC 2 cut(s) 396, 985
BspANI GGCC 5 cut(s) 202, 407, 592, 1117, 1223
BspCNI CTCAG 2 cut(s) 1337, 1542
BspEI TCCGGA 1 cut(s) 796
BspHI TCATGA 1 cut(s) 1192
BspLI GGNNCC 7 cut(s) 376, 528, 570, 632, 1278, 1321, 1527
BspMI ACCTGC 1 cut(s) 1458
BspT104I TTCGAA 1 cut(s) 755
BspT107I GGYRCC 1 cut(s) 1319
BsrDI GCAATG 1 cut(s) 1118
BsrFI RCCGGY 2 cut(s) 152, 403
BsrI ACTGG 2 cut(s) 314, 749
BssAI RCCGGY 2 cut(s) 152, 403
BssECI CCNNGG 1 cut(s) 1070
BssT1I CCWWGG 1 cut(s) 1070
Bst2UI CCWGG 1 cut(s) 1061
Bst4CI ACNGT 1 cut(s) 974
BstAPI GCANNNNNTGC 3 cut(s) 1108, 1605, 1703
BstBI TTCGAA 1 cut(s) 755
BstC8I GCNNGC 3 cut(s) 405, 556, 1606
BstDEI CTNAG 6 cut(s) 488, 684, 762, 1139, 1324, 1550
BstF5I GGATG 5 cut(s) 124, 290, 694, 805, 1052
BstMAI GTCTC 1 cut(s) 1422
BstMWI GCNNNNNNNGC 4 cut(s) 1108, 1220, 1605, 1703
BstNI CCWGG 1 cut(s) 1061
BstNSI RCATGY 1 cut(s) 812
BstSCI CCNGG 2 cut(s) 391, 1059
BstSFI CTRYAG 5 cut(s) 88, 655, 1119, 1402, 1572
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 313, 1226
BstV2I GAAGAC 2 cut(s) 764, 1464
BstX2I RGATCY 3 cut(s) 568, 1276, 1525
BstYI RGATCY 3 cut(s) 568, 1276, 1525
BsuI GTATCC 1 cut(s) 1635
BsuRI GGCC 5 cut(s) 202, 407, 592, 1117, 1223
BtsCI GGATG 5 cut(s) 124, 290, 694, 805, 1052
BtsI GCAGTG 3 cut(s) 259, 576, 1462
BtsIMutI CAGTG 8 cut(s) 203, 259, 294, 576, 979, 1332, 1462, 1547
BveI ACCTGC 1 cut(s) 1458
Cac8I GCNNGC 3 cut(s) 405, 556, 1606
CciI TCATGA 1 cut(s) 1192
Cfr10I RCCGGY 2 cut(s) 152, 403
Cfr13I GGNCC 5 cut(s) 200, 375, 590, 794, 1343
Csp6I GTAC 4 cut(s) 812, 847, 861, 1320
CspAI ACCGGT 1 cut(s) 152
CviAII CATG 7 cut(s) 83, 320, 673, 809, 1193, 1707, 1714
CviQI GTAC 4 cut(s) 812, 847, 861, 1320
DdeI CTNAG 6 cut(s) 488, 684, 762, 1139, 1324, 1550
EaeI YGGCCR 1 cut(s) 405
EciI GGCGGA 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 1070
Eco24I GRGCYC 1 cut(s) 1339
Eco32I GATATC 3 cut(s) 355, 883, 1036
Eco47I GGWCC 3 cut(s) 375, 794, 1343
EcoRII CCWGG 1 cut(s) 1059
EcoRV GATATC 3 cut(s) 355, 883, 1036
EcoT14I CCWWGG 1 cut(s) 1070
EcoT22I ATGCAT 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 1339
ErhI CCWWGG 1 cut(s) 1070
FaeI CATG 7 cut(s) 86, 323, 676, 812, 1196, 1710, 1717
FalI AAGNNNNNCTT 2 cut(s) 1456, 1488
FaqI GGGAC 2 cut(s) 491, 654
FatI CATG 7 cut(s) 82, 319, 672, 808, 1192, 1706, 1713
FbaI TGATCA 2 cut(s) 612, 1564
Fnu4HI GCNGC 2 cut(s) 327, 1215
FokI GGATG 5 cut(s) 111, 277, 681, 812, 1059
FriOI GRGCYC 1 cut(s) 1339
Fsp4HI GCNGC 2 cut(s) 327, 1215
FspBI CTAG 5 cut(s) 587, 644, 837, 1340, 1617
GluI GCNGC 2 cut(s) 327, 1215
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 1043
HaeIII GGCC 5 cut(s) 202, 407, 592, 1117, 1223
HapII CCGG 5 cut(s) 153, 393, 404, 420, 797
Hin1II CATG 7 cut(s) 86, 323, 676, 812, 1196, 1710, 1717
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 2 cut(s) 72, 1555
HinfI GANTC 6 cut(s) 313, 423, 917, 990, 1013, 1056
HpaII CCGG 5 cut(s) 153, 393, 404, 420, 797
HphI GGTGA 2 cut(s) 1043, 1658
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 2 cut(s) 352, 478
Hpy188III TCNNGA 7 cut(s) 776, 797, 1039, 1053, 1095, 1193, 1258
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 4 cut(s) 41, 107, 398, 973
HpyCH4III ACNGT 1 cut(s) 974
HpyCH4V TGCA 8 cut(s) 676, 788, 977, 1111, 1295, 1455, 1608, 1706
HpyF10VI GCNNNNNNNGC 4 cut(s) 1108, 1220, 1605, 1703
HpyF3I CTNAG 6 cut(s) 488, 684, 762, 1139, 1324, 1550
Hsp92II CATG 7 cut(s) 86, 323, 676, 812, 1196, 1710, 1717
Kpn2I TCCGGA 1 cut(s) 796
KpnI GGTACC 1 cut(s) 1323
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Ksp22I TGATCA 2 cut(s) 612, 1564
LmnI GCTCC 3 cut(s) 532, 1508, 1710
Lsp1109I GCAGC 2 cut(s) 313, 1226
MaeI CTAG 5 cut(s) 587, 644, 837, 1340, 1617
MaeIII GTNAC 7 cut(s) 266, 379, 1158, 1207, 1270, 1457, 1545
MboII GAAGA 3 cut(s) 769, 1390, 1464
MfeI CAATTG 5 cut(s) 789, 855, 906, 1103, 1732
MflI RGATCY 3 cut(s) 568, 1276, 1525
MhlI GDGCHC 3 cut(s) 283, 1086, 1339
MlyI GAGTC 2 cut(s) 1022, 1050
MmeI TCCRAC 4 cut(s) 501, 554, 983, 1265
MnlI CCTC 8 cut(s) 180, 600, 662, 1027, 1144, 1175, 1333, 1539
Mph1103I ATGCAT 1 cut(s) 678
MroI TCCGGA 1 cut(s) 796
MroNI GCCGGC 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 5 cut(s) 501, 804, 816, 1155, 1176
MslI CAYNNNNRTG 1 cut(s) 1659
MspI CCGG 5 cut(s) 153, 393, 404, 420, 797
MspR9I CCNGG 2 cut(s) 393, 1061
MunI CAATTG 5 cut(s) 789, 855, 906, 1103, 1732
Mva1269I GAATGC 1 cut(s) 737
MvaI CCWGG 1 cut(s) 1061
MwoI GCNNNNNNNGC 4 cut(s) 1108, 1220, 1605, 1703
NaeI GCCGGC 1 cut(s) 405
NciI CCSGG 1 cut(s) 393
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 7 cut(s) 86, 323, 676, 812, 1196, 1710, 1717
NlaIV GGNNCC 7 cut(s) 376, 528, 570, 632, 1278, 1321, 1527
NmuCI GTSAC 4 cut(s) 379, 1207, 1457, 1545
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 1 cut(s) 812
NspV TTCGAA 1 cut(s) 755
PagI TCATGA 1 cut(s) 1192
PctI GAATGC 1 cut(s) 737
PdiI GCCGGC 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 4 cut(s) 313, 423, 917, 990
PflMI CCANNNNNTGG 2 cut(s) 582, 899
PinAI ACCGGT 1 cut(s) 152
PkrI GCNGC 2 cut(s) 328, 1216
PleI GAGTC 2 cut(s) 1021, 1050
PpsI GAGTC 2 cut(s) 1021, 1050
Psp6I CCWGG 1 cut(s) 1059
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 1 cut(s) 1059
PspN4I GGNNCC 7 cut(s) 376, 528, 570, 632, 1278, 1321, 1527
PspPI GGNCC 5 cut(s) 200, 375, 590, 794, 1343
PsuI RGATCY 3 cut(s) 568, 1276, 1525
RsaI GTAC 4 cut(s) 813, 848, 862, 1321
RsaNI GTAC 4 cut(s) 812, 847, 861, 1320
RseI CAYNNNNRTG 1 cut(s) 1659
SaqAI TTAA 5 cut(s) 501, 804, 816, 1155, 1176
SatI GCNGC 2 cut(s) 327, 1215
Sau96I GGNCC 5 cut(s) 200, 375, 590, 794, 1343
ScaI AGTACT 1 cut(s) 848
SchI GAGTC 2 cut(s) 1022, 1050
ScrFI CCNGG 2 cut(s) 393, 1061
SduI GDGCHC 3 cut(s) 283, 1086, 1339
SfcI CTRYAG 5 cut(s) 88, 655, 1119, 1402, 1572
SfuI TTCGAA 1 cut(s) 755
SinI GGWCC 3 cut(s) 375, 794, 1343
SmiMI CAYNNNNRTG 1 cut(s) 1659
SmlI CTYRAG 4 cut(s) 534, 1018, 1130, 1256
SmoI CTYRAG 4 cut(s) 534, 1018, 1130, 1256
SsiI CCGC 2 cut(s) 396, 985
SspMI CTAG 5 cut(s) 587, 644, 837, 1340, 1617
StyD4I CCNGG 2 cut(s) 391, 1059
StyI CCWWGG 1 cut(s) 1070
TaaI ACNGT 1 cut(s) 974
TaqI TCGA 2 cut(s) 755, 1086
TatI WGTACW 2 cut(s) 811, 846
TfiI GAWTC 4 cut(s) 313, 423, 917, 990
Tru1I TTAA 5 cut(s) 501, 804, 816, 1155, 1176
Tru9I TTAA 5 cut(s) 501, 804, 816, 1155, 1176
TscAI CASTG 8 cut(s) 210, 259, 301, 583, 979, 1332, 1462, 1554
TseFI GTSAC 4 cut(s) 379, 1207, 1457, 1545
TseI GCWGC 2 cut(s) 326, 1214
Tsp45I GTSAC 4 cut(s) 379, 1207, 1457, 1545
TspDTI ATGAA 5 cut(s) 336, 661, 1181, 1209, 1730
TspGWI ACGGA 2 cut(s) 367, 1289
TspRI CASTG 8 cut(s) 210, 259, 301, 583, 979, 1332, 1462, 1554
Van91I CCANNNNNTGG 2 cut(s) 582, 899
VpaK11BI GGWCC 3 cut(s) 375, 794, 1343
XapI RAATTY 2 cut(s) 219, 1407
XceI RCATGY 1 cut(s) 812
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 5 cut(s) 587, 644, 837, 1340, 1617
ZrmI AGTACT 1 cut(s) 848
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.