Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001901

Physical Location & Seq

Genomic Coordinates Forward (+)

60502230 .. 60503955

Gene Structure 1726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGATCCCAACCGAAGTTAACCAAATAAATGCAGACTCATTTAGGGACCCAACTACTGCTTGGCTAGGGTCAGATAATAGATGGAGATTAGTCATTGGAAGCAAGAAAAACCAAACTGGCCTGGCTATTCTATATATGAGCGAAGATTTCCTACATTGGACCATGGTAAACCACAGCTTTCATTCAGCAAAGGACAATGGAATGTGGGAGTGCCCGGATTTTTTCCCAGTTTCAAAGAGTAGCTCAATTGGTCTTGACACATCAACGAATGGTCCGGATGTTAAGCATGTGCTCAAGGTTAGCTTGTTTGATACTGCTAAAGAGTACTACACAATTGGGACGTATAACCTGGACAAAGATATATATAAACCTGATAAGGGATCAGTGGAGAGTGATTCGGGTTTGAGATATGATTATGGTAAGTTTTATGCATCAAAATCCTTCTTTGACAGTGCTAAGAACCGTAGGATCTTGTGGGGCTGGAGTAATGAGTCCTCAAGTGCCAATGATGACATCAAGAAGGGATGGTCTGGACTCCAGGCAATTCCAAGGACCCTTTTGCTTGGTAAGTCTGGGAAACAGTTGGTACAATGGCCTGTTGAAGAACTTGAAAAGATGAGAACAAAGCTGGTTAGGTTGCCAAGTACTGTGATTAAAGGAGGATCACTCCATGAAGTACTTGGAGTCACAGCAGCACAAGCAGATGTAGAAGTTACATTTGAGTTGAGTGATTTTGAGAAAACAGAGGTGCTAGATCCAAGTTGGACCGATCCACAAATTTTGTGTAGCAAAAAGGATGCCTCAGTTTATGGGGGCCTAGGACCATTTGGGTTGCTGGTTTTGGCTTCAGAGGGTTTGCAAGAATACACAGCAGTCTTTTATAGAGTATTCAAATCTCACAACAACAGTAACAAGTATGTGGTGCTCATGTGCAGTGATCAAAGCAGGTCTTCCTTAAATGAAGATAATGATAAGACCACATACGGGGCCTTTGTAAACGTTGATCCTCTTCATGAGAAGCTATCACTTAGAAGCTTGATTGATCACTCTATAGTTGAGAGCTTTGGTGGAGAAGGCAAGGCGTGCATAACGACAAGGGTTTATCCCATATTGGCTGTTGATGGTGATACCCACTTATATGCTTTCAATTATGGGAGAGAGAGTGTCAAGATCACAGGAAGTGCATGGAGCATGAGGACTGCAAAGATTAATCGATCAAGAAAAGAAGATAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0016020 GO:0016787 GO:0016798 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0080167 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

413

Amino Acids

46.15

Weight (kDa)

6.04

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_32N	PF00251	7 - 199	3.5e-51	Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C	PF08244	222 - 389	9.8e-24	Glycosyl hydrolases family 32 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13790 AT3G13790 AT3G13790 AT3G13790 AT3G13790
fragaria_vesca	FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33602 FvH4_6g33602 FvH4_6g33602
malus_domestica	MD09G1192100.v1.1
prunus_persica	Prupe.3G009500_v2.0.a1 Prupe.3G048300_v2.0.a1 Prupe.3G048300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143501 RchiOBHm_Chr2g0143521
rosa_laevigata	RLG00000020041 RLG00000020043
rosa_multiflora	Rmu_sc0003507.1_g000032 Rmu_sc0005083.1_g000003 Rmu_sc0005083.1_g000014 Rmu_sc0015791.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101770 Rroxscaffold_2G00101800
rosa_rugosa	Rorug02G0382100 Rorug02G0382200 Rorug02G0382200 Rorug02G0382300 Rorug02G0382300 Rorug02G0382600 Rorug02G0382700 Rorug02G0382700 Rorug02G0383000 Rorug02G0383000 Rorug02G0383100
rosa_samantha	Rh2AG435000 Rh2AG435300 Rh2BG442700 Rh2BG442900 Rh2CG421000 Rh2CG421400 Rh2DG452900 Rh2DG453300
rosa_wichuraiana	Rw2G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	936
AccIII	TCCGGA	1 cut(s)	274
AclI	AACGTT	1 cut(s)	999
AclWI	GGATC	6 cut(s)	388, 476, 670, 749, 764, 998
AcsI	RAATTY	1 cut(s)	777
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	4 cut(s)	326, 588, 646, 678
AfiI	CCNNNNNNNGG	2 cut(s)	377, 984
AgsI	TTSAA	5 cut(s)	234, 602, 611, 892, 1147
AjnI	CCWGG	3 cut(s)	120, 348, 537
AluBI	AGCT	7 cut(s)	177, 243, 303, 628, 1021, 1035, 1062
AluI	AGCT	7 cut(s)	177, 243, 303, 628, 1021, 1035, 1062
Alw21I	GWGCWC	2 cut(s)	294, 927
AlwI	GGATC	6 cut(s)	388, 476, 670, 749, 764, 998
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	4 cut(s)	118, 593, 814, 987
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	1 cut(s)	777
AseI	ATTAAT	1 cut(s)	1209
AspA2I	CCTAGG	1 cut(s)	817
AspS9I	GGNCC	8 cut(s)	46, 159, 272, 552, 765, 814, 821, 987
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	1136
AvaII	GGWCC	6 cut(s)	46, 159, 272, 552, 765, 821
AvrII	CCTAGG	1 cut(s)	817
BaeGI	GKGCMC	1 cut(s)	215
BarI	GAAGNNNNNNTAC	2 cut(s)	135, 167
BbsI	GAAGAC	1 cut(s)	942
Bbv12I	GWGCWC	2 cut(s)	294, 927
BbvI	GCAGC	1 cut(s)	704
BccI	CCATC	3 cut(s)	75, 519, 1115
BciT130I	CCWGG	3 cut(s)	122, 350, 539
BclI	TGATCA	2 cut(s)	937, 1042
BcnI	CCSGG	1 cut(s)	215
BfaI	CTAG	3 cut(s)	65, 752, 818
BfmI	CTRYAG	1 cut(s)	1050
BfuAI	ACCTGC	1 cut(s)	936
BisI	GCNGC	1 cut(s)	693
BlnI	CCTAGG	1 cut(s)	817
BlsI	GCNGC	1 cut(s)	694
BmcAI	AGTACT	3 cut(s)	326, 646, 678
Bme1390I	CCNGG	4 cut(s)	122, 215, 350, 539
Bme18I	GGWCC	6 cut(s)	46, 159, 272, 552, 765, 821
BmgT120I	GGNCC	8 cut(s)	46, 159, 272, 552, 765, 814, 821, 987
BmiI	GGNNCC	5 cut(s)	47, 48, 554, 815, 988
BmrFI	CCNGG	4 cut(s)	122, 215, 350, 539
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	440, 787
BmuI	ACTGGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	942
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
BpmI	CTGGAG	2 cut(s)	502, 521
BpuEI	CTTGAG	2 cut(s)	278, 481
BpuMI	CCSGG	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	1213
BsaJI	CCNNGG	3 cut(s)	162, 548, 817
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	1147, 1177
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 984
Bse1I	ACTGG	2 cut(s)	121, 227
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	3 cut(s)	122, 350, 539
BseCI	ATCGAT	1 cut(s)	1213
BseDI	CCNNGG	3 cut(s)	162, 548, 817
BseGI	GGATG	3 cut(s)	283, 530, 802
BseLI	CCNNNNNNNGG	2 cut(s)	377, 984
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	2 cut(s)	121, 227
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	704
BsgI	GTGCAG	1 cut(s)	952
BshFI	GGCC	4 cut(s)	120, 595, 816, 989
BshVI	ATCGAT	1 cut(s)	1213
BsiHKAI	GWGCWC	2 cut(s)	294, 927
BsiSI	CCGG	2 cut(s)	215, 275
BslFI	GGGAC	2 cut(s)	59, 352
BslI	CCNNNNNNNGG	2 cut(s)	377, 984
BsmFI	GGGAC	2 cut(s)	59, 352
BsnI	GGCC	4 cut(s)	120, 595, 816, 989
Bsp1286I	GDGCHC	3 cut(s)	215, 294, 927
Bsp13I	TCCGGA	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	162
BspANI	GGCC	4 cut(s)	120, 595, 816, 989
BspCNI	CTCAG	1 cut(s)	815
BspDI	ATCGAT	1 cut(s)	1213
BspEI	TCCGGA	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	1012
BspLI	GGNNCC	5 cut(s)	47, 48, 554, 815, 988
BspMI	ACCTGC	1 cut(s)	936
BspPI	GGATC	6 cut(s)	388, 476, 670, 749, 764, 998
BsrI	ACTGG	2 cut(s)	121, 227
BssECI	CCNNGG	3 cut(s)	162, 548, 817
BssT1I	CCWWGG	3 cut(s)	162, 548, 817
Bst2UI	CCWGG	3 cut(s)	122, 350, 539
Bst4CI	ACNGT	5 cut(s)	452, 464, 582, 649, 908
Bst6I	CTCTTC	1 cut(s)	1014
BstAPI	GCANNNNNTGC	1 cut(s)	1083
BstC8I	GCNNGC	1 cut(s)	1084
BstDEI	CTNAG	3 cut(s)	456, 802, 1028
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	283, 530, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 1083
BstNI	CCWGG	3 cut(s)	122, 350, 539
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	4 cut(s)	120, 213, 348, 537
BstSFI	CTRYAG	1 cut(s)	1050
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	704
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	2 cut(s)	468, 754
BstYI	RGATCY	2 cut(s)	468, 754
Bsu15I	ATCGAT	1 cut(s)	1213
BsuRI	GGCC	4 cut(s)	120, 595, 816, 989
BsuTUI	ATCGAT	1 cut(s)	1213
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	283, 530, 802
BtsI	GCAGTG	1 cut(s)	940
BtsIMutI	CAGTG	3 cut(s)	390, 457, 940
BveI	ACCTGC	1 cut(s)	936
Cac8I	GCNNGC	1 cut(s)	1084
CciI	TCATGA	1 cut(s)	1012
Cfr13I	GGNCC	8 cut(s)	46, 159, 272, 552, 765, 814, 821, 987
ClaI	ATCGAT	1 cut(s)	1213
Csp6I	GTAC	4 cut(s)	325, 587, 645, 677
CspCI	CAANNNNNGTGG	2 cut(s)	762, 797
CviAII	CATG	7 cut(s)	163, 287, 671, 928, 1013, 1185, 1192
CviQI	GTAC	4 cut(s)	325, 587, 645, 677
DdeI	CTNAG	3 cut(s)	456, 802, 1028
Eam1104I	CTCTTC	1 cut(s)	1014
EarI	CTCTTC	1 cut(s)	1014
Eco130I	CCWWGG	3 cut(s)	162, 548, 817
Eco47I	GGWCC	6 cut(s)	46, 159, 272, 552, 765, 821
Eco57I	CTGAAG	1 cut(s)	831
EcoO109I	RGGNCCY	4 cut(s)	46, 552, 814, 987
EcoRII	CCWGG	3 cut(s)	120, 348, 537
EcoT14I	CCWWGG	3 cut(s)	162, 548, 817
EcoT22I	ATGCAT	1 cut(s)	433
ErhI	CCWWGG	3 cut(s)	162, 548, 817
FaeI	CATG	7 cut(s)	166, 290, 674, 931, 1016, 1188, 1195
FalI	AAGNNNNNCTT	4 cut(s)	287, 319, 934, 966
FaqI	GGGAC	2 cut(s)	59, 352
FatI	CATG	7 cut(s)	162, 286, 670, 927, 1012, 1184, 1191
FbaI	TGATCA	2 cut(s)	937, 1042
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	3 cut(s)	290, 537, 809
Fsp4HI	GCNGC	1 cut(s)	693
FspBI	CTAG	3 cut(s)	65, 752, 818
GluI	GCNGC	1 cut(s)	693
GsuI	CTGGAG	2 cut(s)	502, 521
HaeIII	GGCC	4 cut(s)	120, 595, 816, 989
HapII	CCGG	2 cut(s)	215, 275
Hin1II	CATG	7 cut(s)	166, 290, 674, 931, 1016, 1188, 1195
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	1033
HinfI	GANTC	5 cut(s)	35, 395, 491, 534, 684
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	215, 275
HphI	GGTGA	1 cut(s)	1136
Hpy166II	GTNNAC	3 cut(s)	19, 169, 997
Hpy188I	TCNGA	2 cut(s)	73, 850
Hpy188III	TCNNGA	7 cut(s)	254, 275, 517, 531, 1013, 1168, 1218
Hpy8I	GTNNAC	3 cut(s)	19, 169, 997
HpyAV	CCTTC	3 cut(s)	451, 514, 1067
HpyCH4III	ACNGT	5 cut(s)	452, 464, 582, 649, 908
HpyCH4IV	ACGT	2 cut(s)	341, 999
HpyCH4V	TGCA	7 cut(s)	32, 431, 859, 933, 1086, 1184, 1202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 1083
HpyF3I	CTNAG	3 cut(s)	456, 802, 1028
HpySE526I	ACGT	2 cut(s)	341, 999
Hsp92II	CATG	7 cut(s)	166, 290, 674, 931, 1016, 1188, 1195
KflI	GGGWCCC	1 cut(s)	46
Kpn2I	TCCGGA	1 cut(s)	274
Ksp22I	TGATCA	2 cut(s)	937, 1042
KspAI	GTTAAC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	1188
Lsp1109I	GCAGC	1 cut(s)	704
LweI	GCATC	2 cut(s)	440, 787
MaeI	CTAG	3 cut(s)	65, 752, 818
MaeII	ACGT	2 cut(s)	341, 999
MaeIII	GTNAC	3 cut(s)	685, 712, 908
MboII	GAAGA	6 cut(s)	155, 614, 942, 974, 1001, 1238
MfeI	CAATTG	2 cut(s)	246, 333
MflI	RGATCY	2 cut(s)	468, 754
MhlI	GDGCHC	3 cut(s)	215, 294, 927
MluCI	AATT	5 cut(s)	246, 333, 543, 777, 1147
MlyI	GAGTC	4 cut(s)	29, 500, 528, 693
MmeI	TCCRAC	1 cut(s)	743
MnlI	CCTC	7 cut(s)	505, 653, 739, 811, 844, 1017, 1188
Mph1103I	ATGCAT	1 cut(s)	433
MroI	TCCGGA	1 cut(s)	274
MseI	TTAA	5 cut(s)	18, 282, 654, 956, 1209
MslI	CAYNNNNRTG	1 cut(s)	1137
MspI	CCGG	2 cut(s)	215, 275
MspR9I	CCNGG	4 cut(s)	122, 215, 350, 539
MunI	CAATTG	2 cut(s)	246, 333
MvaI	CCWGG	3 cut(s)	122, 350, 539
MwoI	GCNNNNNNNGC	2 cut(s)	698, 1083
NciI	CCSGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	162
NlaIII	CATG	7 cut(s)	166, 290, 674, 931, 1016, 1188, 1195
NlaIV	GGNNCC	5 cut(s)	47, 48, 554, 815, 988
NmuCI	GTSAC	1 cut(s)	685
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	290
PagI	TCATGA	1 cut(s)	1012
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	694
PleI	GAGTC	4 cut(s)	29, 499, 528, 692
PpsI	GAGTC	4 cut(s)	29, 499, 528, 692
PpuMI	RGGWCCY	2 cut(s)	46, 552
PshBI	ATTAAT	1 cut(s)	1209
Psp1406I	AACGTT	1 cut(s)	999
Psp5II	RGGWCCY	2 cut(s)	46, 552
Psp6I	CCWGG	3 cut(s)	120, 348, 537
PspGI	CCWGG	3 cut(s)	120, 348, 537
PspN4I	GGNNCC	5 cut(s)	47, 48, 554, 815, 988
PspPI	GGNCC	8 cut(s)	46, 159, 272, 552, 765, 814, 821, 987
PspPPI	RGGWCCY	2 cut(s)	46, 552
PsuI	RGATCY	2 cut(s)	468, 754
RsaI	GTAC	4 cut(s)	326, 588, 646, 678
RsaNI	GTAC	4 cut(s)	325, 587, 645, 677
RseI	CAYNNNNRTG	1 cut(s)	1137
SaqAI	TTAA	5 cut(s)	18, 282, 654, 956, 1209
SatI	GCNGC	1 cut(s)	693
Sau96I	GGNCC	8 cut(s)	46, 159, 272, 552, 765, 814, 821, 987
ScaI	AGTACT	3 cut(s)	326, 646, 678
SchI	GAGTC	4 cut(s)	29, 500, 528, 693
ScrFI	CCNGG	4 cut(s)	122, 215, 350, 539
SduI	GDGCHC	3 cut(s)	215, 294, 927
SfaNI	GCATC	2 cut(s)	440, 787
SfcI	CTRYAG	1 cut(s)	1050
SinI	GGWCC	6 cut(s)	46, 159, 272, 552, 765, 821
SmiMI	CAYNNNNRTG	1 cut(s)	1137
SmlI	CTYRAG	2 cut(s)	293, 496
SmoI	CTYRAG	2 cut(s)	293, 496
Sse9I	AATT	5 cut(s)	246, 333, 543, 777, 1147
SspMI	CTAG	3 cut(s)	65, 752, 818
StyD4I	CCNGG	4 cut(s)	120, 213, 348, 537
StyI	CCWWGG	3 cut(s)	162, 548, 817
TaaI	ACNGT	5 cut(s)	452, 464, 582, 649, 908
TaiI	ACGT	2 cut(s)	344, 1002
TaqI	TCGA	1 cut(s)	1213
TaqII	GACCGA	1 cut(s)	782
TasI	AATT	5 cut(s)	246, 333, 543, 777, 1147
TatI	WGTACW	3 cut(s)	324, 644, 676
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	5 cut(s)	18, 282, 654, 956, 1209
Tru9I	TTAA	5 cut(s)	18, 282, 654, 956, 1209
TscAI	CASTG	3 cut(s)	390, 457, 940
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	4 cut(s)	170, 687, 975, 1001
TspRI	CASTG	3 cut(s)	390, 457, 940
VpaK11BI	GGWCC	6 cut(s)	46, 159, 272, 552, 765, 821
VspI	ATTAAT	1 cut(s)	1209
XapI	RAATTY	1 cut(s)	777
XceI	RCATGY	1 cut(s)	290
XcmI	CCANNNNNNNNNTGG	2 cut(s)	57, 677
XmaJI	CCTAGG	1 cut(s)	817
XspI	CTAG	3 cut(s)	65, 752, 818
ZrmI	AGTACT	3 cut(s)	326, 646, 678
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.