RchiOBHm_Chr2g0143521

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
61206793 .. 61212969
6177 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51361

Sequence Viewer

Length: 1761 bp
ATGGCCTTGATGATATTCTCTCTTCGGATATTCTTCTTTCTTTCAGTTTTGCTTTCCTTTGGCGTTATTGAGCTTGAAGGTTCCCACCATGCTTGCAGCAACCTTCTGAATTTGGAACTACCTTCAACATGCCAAGCTAAAGAGCCTTACAGAACCGGGTATCATTTCCAGCCTCCCAAGAATTGGATCAACGATCCTAATGGGCCATTGATATACAAAAACGTGTACCATCATTTTTATCAATATAATCCTCATGGTGTAGCTTGGTCACCCAATATAGTTTGGGCCCATTCAACATCAAATGATCTTGTCAATTGGATTCCACATGACGATGCCCTCAATCCATCAGAGCCGTTTGATATTAACGGTTGTTGGTCGGGGTCTGCTACAATCCTCCCTGGGGAAAAGCCGGCCATTTTCTACACTGGAATCAACTCCGAAAATGAGCAAGTTCAAAACTTGGCCTTCCCCAAAAATCTCTCAGACCCATTTCTCAGAGAATGGGTTAAAATCCCACAAAACCCACTAATGATCCCAACCGAAGCTAACCAAATAAATGCAGACTCATTTAGGGACCCAAGTACTGCTTGGCTAGGGTCAGATAATAGATGGAGATTAGTCATTGGAAGCAAGCAAAACCAAACTGGCCTAGCCATTCTATATATGAGCGAAGATTTCCTACATTGGACCAGGGTAAACCACACCTTTCATTCAGCAAAGGAAAATGGAATGTGGGAGTGCCCAGATTTTTTCCCAGTTTCAAACAGTAGCCCAATTGGTCTTGACACATCAACGAATGGTCCGGATGTTAAGCATGTGCTCAAGGTTAGCTTGTTTGATACTGCTAAAGAGTACTACACAATTGGAACATATAACCTAGACAAAGATTTATATAACCCTGATAAGGGATCAGAGGAGAGTGATTTGGGTTTGAGATATGATTATGGTAAGTTTTATGCATCAAAATCCTTCTTTGACAGTGCTAAGAACCGTAGGATCTTGTGGGGTTGGAGTAATGAATCCTCAAGTGCCAATGATGACATCAAGAAGGGTTGGTCTGGACTCCAGACAATTCCAAGGACCATTTTACTTGATGAGTCTGGGAAACAATTGGTACAATGGCCCATCGAAGAACTTGAAAAGCTGAGAACAAAGCAGGTTAGGTTGCCAAGAATTGTGATAGAGGGAGGATCACTACATGAAGTACTTGGAGTCACAGCAGCACAGGCAGATATAGAAGTTACATTTGAGATAAGTGATTTTGAAAAAACAGAGGTGCTGGATCCAAGTTGGACCGATCCACAAATTTTGTGTAGCAAAAAGGATGCCTCAGTTTATGGGGGTCTAGGACCATTTGGGTTGCTGGTTTTGGCTTCAGAGAGTTTGCAAGAATACACAGCAGTCTTTTATAGAATATTCAAATCTCACAACAACAAATATGTGGTGCTCATGTGCAGTGATCAAAGCAGGTCTTCCTTAAACGAAAATAATGATAAGACCACATACGGGGCCTTTGTAGATGTGGATCCTGTTCATGAGAAGCTATCACTCAGAAGCTTGATTGATCACTCTATAGTGGAGAGCTTTGGTGGAGAAGGCAAGGCGTGCATAACAGCCAGGGTTTATCCCACATTGGCTGTTGATGGTTATACCAGCTTATATACTTTCAATTATGGGAAGGAGGGTGTAAAAATCACAGGAAGTGCATGGAGCATGAGGACTGCAAAGATTAATCGATCAAGAAAAGAAGAGAATGAATAG

Protein Analysis

586

Amino Acids

66.23

Weight (kDa)

5.46

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 55 - 375 1.7e-101 Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C PF08244 378 - 561 1.4e-24 Glycosyl hydrolases family 32 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1147, 1458
AccB7I CCANNNNNTGG 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 802
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 2 cut(s) 109, 1305
AcuI CTGAAG 1 cut(s) 1359
AfaI GTAC 5 cut(s) 227, 583, 854, 1116, 1206
AfiI CCNNNNNNNGG 5 cut(s) 183, 400, 904, 905, 1506
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 9 cut(s) 77, 126, 294, 455, 762, 1139, 1265, 1420, 1669
AjnI CCWGG 3 cut(s) 397, 689, 1616
Alw21I GWGCWC 2 cut(s) 822, 1449
Aor13HI TCCGGA 1 cut(s) 802
AoxI GGCC 8 cut(s) 3, 203, 285, 411, 462, 646, 1121, 1509
ApaI GGGCCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 96, 1220
ApoI RAATTY 2 cut(s) 109, 1305
AseI ATTAAT 1 cut(s) 1731
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 261
AvaII GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
BaeGI GKGCMC 2 cut(s) 289, 743
BamHI GGATCC 2 cut(s) 1282, 1525
BanII GRGCYC 1 cut(s) 289
BarI GAAGNNNNNNTAC 2 cut(s) 663, 695
BbsI GAAGAC 1 cut(s) 1464
Bbv12I GWGCWC 2 cut(s) 822, 1449
BbvI GCAGC 2 cut(s) 108, 1232
BccI CCATC 5 cut(s) 237, 352, 603, 1133, 1637
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 3 cut(s) 399, 691, 1618
BclI TGATCA 2 cut(s) 1459, 1564
BcnI CCSGG 1 cut(s) 157
BfaI CTAG 4 cut(s) 593, 650, 878, 1346
BfmI CTRYAG 1 cut(s) 1572
BfuAI ACCTGC 2 cut(s) 1147, 1458
BisI GCNGC 2 cut(s) 97, 1221
BlsI GCNGC 2 cut(s) 98, 1222
BmcAI AGTACT 3 cut(s) 583, 854, 1206
Bme1390I CCNGG 4 cut(s) 157, 399, 691, 1618
Bme18I GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
BmiI GGNNCC 7 cut(s) 82, 287, 575, 576, 1284, 1510, 1527
BmrFI CCNGG 4 cut(s) 157, 399, 691, 1618
BmrI ACTGGG 1 cut(s) 749
BmsI GCATC 3 cut(s) 322, 968, 1315
BmuI ACTGGG 1 cut(s) 749
BpiI GAAGAC 1 cut(s) 1464
BpmI CTGGAG 1 cut(s) 1049
BpuEI CTTGAG 2 cut(s) 806, 1009
BpuMI CCSGG 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 1735
BsaBI GATNNNNATC 1 cut(s) 1524
BsaJI CCNNGG 5 cut(s) 397, 398, 690, 1076, 1617
BsaWI WCCGGW 1 cut(s) 802
Bsc4I CCNNNNNNNGG 5 cut(s) 183, 400, 904, 905, 1506
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 3 cut(s) 430, 649, 755
Bse8I GATNNNNATC 1 cut(s) 1524
BseAI TCCGGA 1 cut(s) 802
BseBI CCWGG 3 cut(s) 399, 691, 1618
BseCI ATCGAT 1 cut(s) 1735
BseDI CCNNGG 5 cut(s) 397, 398, 690, 1076, 1617
BseGI GGATG 2 cut(s) 811, 1330
BseJI GATNNNNATC 1 cut(s) 1524
BseLI CCNNNNNNNGG 5 cut(s) 183, 400, 904, 905, 1506
BseMII CTCAG 5 cut(s) 495, 508, 1136, 1344, 1564
BseNI ACTGG 3 cut(s) 430, 649, 755
BseRI GAGGAG 1 cut(s) 929
BseSI GKGCMC 2 cut(s) 289, 743
BseXI GCAGC 2 cut(s) 108, 1232
BsgI GTGCAG 1 cut(s) 1474
BshFI GGCC 8 cut(s) 5, 205, 287, 413, 464, 648, 1123, 1511
BshVI ATCGAT 1 cut(s) 1735
BsiHKAI GWGCWC 2 cut(s) 822, 1449
BsiSI CCGG 3 cut(s) 156, 410, 803
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 5 cut(s) 183, 400, 904, 905, 1506
BsmFI GGGAC 1 cut(s) 587
BsnI GGCC 8 cut(s) 5, 205, 287, 413, 464, 648, 1123, 1511
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 4 cut(s) 289, 743, 822, 1449
Bsp13I TCCGGA 1 cut(s) 802
BspANI GGCC 8 cut(s) 5, 205, 287, 413, 464, 648, 1123, 1511
BspCNI CTCAG 5 cut(s) 494, 507, 1137, 1343, 1563
BspDI ATCGAT 1 cut(s) 1735
BspEI TCCGGA 1 cut(s) 802
BspHI TCATGA 1 cut(s) 1534
BspLI GGNNCC 7 cut(s) 82, 287, 575, 576, 1284, 1510, 1527
BspMI ACCTGC 2 cut(s) 1147, 1458
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 3 cut(s) 430, 649, 755
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 5 cut(s) 397, 398, 690, 1076, 1617
BssT1I CCWWGG 1 cut(s) 1076
Bst2UI CCWGG 3 cut(s) 399, 691, 1618
Bst4CI ACNGT 4 cut(s) 368, 767, 980, 992
Bst6I CTCTTC 2 cut(s) 27, 1743
BstAPI GCANNNNNTGC 1 cut(s) 1605
BstC8I GCNNGC 4 cut(s) 94, 411, 632, 1606
BstDEI CTNAG 6 cut(s) 481, 494, 984, 1145, 1330, 1550
BstEII GGTNACC 1 cut(s) 267
BstF5I GGATG 2 cut(s) 811, 1330
BstMWI GCNNNNNNNGC 2 cut(s) 1226, 1605
BstNI CCWGG 3 cut(s) 399, 691, 1618
BstNSI RCATGY 2 cut(s) 132, 818
BstPI GGTNACC 1 cut(s) 267
BstSCI CCNGG 4 cut(s) 155, 397, 689, 1616
BstSFI CTRYAG 1 cut(s) 1572
BstSLI GKGCMC 2 cut(s) 289, 743
BstV1I GCAGC 2 cut(s) 108, 1232
BstV2I GAAGAC 1 cut(s) 1464
BstX2I RGATCY 3 cut(s) 996, 1282, 1525
BstYI RGATCY 3 cut(s) 996, 1282, 1525
Bsu15I ATCGAT 1 cut(s) 1735
BsuRI GGCC 8 cut(s) 5, 205, 287, 413, 464, 648, 1123, 1511
BsuTUI ATCGAT 1 cut(s) 1735
BtsCI GGATG 2 cut(s) 811, 1330
BtsI GCAGTG 1 cut(s) 1462
BtsIMutI CAGTG 3 cut(s) 423, 985, 1462
BveI ACCTGC 2 cut(s) 1147, 1458
Cac8I GCNNGC 4 cut(s) 94, 411, 632, 1606
CciI TCATGA 1 cut(s) 1534
Cfr10I RCCGGY 1 cut(s) 409
ClaI ATCGAT 1 cut(s) 1735
Csp6I GTAC 5 cut(s) 226, 582, 853, 1115, 1205
CspCI CAANNNNNGTGG 4 cut(s) 74, 109, 1290, 1325
CviQI GTAC 5 cut(s) 226, 582, 853, 1115, 1205
DdeI CTNAG 6 cut(s) 481, 494, 984, 1145, 1330, 1550
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 27, 1743
EarI CTCTTC 2 cut(s) 27, 1743
Eco130I CCWWGG 1 cut(s) 1076
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
Eco57I CTGAAG 1 cut(s) 1359
Eco91I GGTNACC 1 cut(s) 267
EcoO109I RGGNCCY 2 cut(s) 574, 1509
EcoO65I GGTNACC 1 cut(s) 267
EcoRII CCWGG 3 cut(s) 397, 689, 1616
EcoT14I CCWWGG 1 cut(s) 1076
EcoT22I ATGCAT 1 cut(s) 961
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 1076
FalI AAGNNNNNCTT 6 cut(s) 571, 603, 815, 847, 1456, 1488
FaqI GGGAC 1 cut(s) 587
FbaI TGATCA 2 cut(s) 1459, 1564
Fnu4HI GCNGC 2 cut(s) 97, 1221
FokI GGATG 2 cut(s) 818, 1337
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 97, 1221
FspBI CTAG 4 cut(s) 593, 650, 878, 1346
GluI GCNGC 2 cut(s) 97, 1221
GsuI CTGGAG 1 cut(s) 1049
HaeIII GGCC 8 cut(s) 5, 205, 287, 413, 464, 648, 1123, 1511
HapII CCGG 3 cut(s) 156, 410, 803
HindIII AAGCTT 1 cut(s) 1555
HinfI GANTC 7 cut(s) 319, 429, 563, 1019, 1062, 1097, 1212
HpaII CCGG 3 cut(s) 156, 410, 803
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 226, 697
Hpy188III TCNNGA 7 cut(s) 782, 803, 1045, 1059, 1066, 1535, 1740
Hpy8I GTNNAC 2 cut(s) 226, 697
HpyAV CCTTC 8 cut(s) 71, 113, 132, 475, 979, 1042, 1589, 1672
HpyCH4III ACNGT 4 cut(s) 368, 767, 980, 992
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 8 cut(s) 96, 560, 959, 1387, 1455, 1608, 1706, 1724
HpyF10VI GCNNNNNNNGC 2 cut(s) 1226, 1605
HpyF3I CTNAG 6 cut(s) 481, 494, 984, 1145, 1330, 1550
HpySE526I ACGT 1 cut(s) 222
KflI GGGWCCC 1 cut(s) 574
Kpn2I TCCGGA 1 cut(s) 802
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Ksp22I TGATCA 2 cut(s) 1459, 1564
LmnI GCTCC 1 cut(s) 1710
Lsp1109I GCAGC 2 cut(s) 108, 1232
LweI GCATC 3 cut(s) 322, 968, 1315
MaeI CTAG 4 cut(s) 593, 650, 878, 1346
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 3 cut(s) 267, 1213, 1240
MboII GAAGA 6 cut(s) 14, 25, 683, 1142, 1464, 1760
MfeI CAATTG 4 cut(s) 313, 774, 861, 1109
MflI RGATCY 3 cut(s) 996, 1282, 1525
MhlI GDGCHC 4 cut(s) 289, 743, 822, 1449
MlyI GAGTC 4 cut(s) 557, 1056, 1106, 1221
MmeI TCCRAC 2 cut(s) 989, 1271
Mph1103I ATGCAT 1 cut(s) 961
MroI TCCGGA 1 cut(s) 802
MroNI GCCGGC 1 cut(s) 409
MseI TTAA 5 cut(s) 363, 507, 810, 1478, 1731
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 3 cut(s) 156, 410, 803
MspR9I CCNGG 4 cut(s) 157, 399, 691, 1618
MunI CAATTG 4 cut(s) 313, 774, 861, 1109
MvaI CCWGG 3 cut(s) 399, 691, 1618
MwoI GCNNNNNNNGC 2 cut(s) 1226, 1605
NaeI GCCGGC 1 cut(s) 411
NciI CCSGG 1 cut(s) 157
NgoMIV GCCGGC 1 cut(s) 409
NlaIV GGNNCC 7 cut(s) 82, 287, 575, 576, 1284, 1510, 1527
NmuCI GTSAC 2 cut(s) 267, 1213
NsiI ATGCAT 1 cut(s) 961
NspI RCATGY 2 cut(s) 132, 818
PagI TCATGA 1 cut(s) 1534
PasI CCCWGGG 1 cut(s) 398
PdiI GCCGGC 1 cut(s) 411
PfeI GAWTC 3 cut(s) 319, 429, 1019
PflMI CCANNNNNTGG 1 cut(s) 183
PkrI GCNGC 2 cut(s) 98, 1222
PleI GAGTC 4 cut(s) 557, 1056, 1105, 1220
PpsI GAGTC 4 cut(s) 557, 1056, 1105, 1220
PpuMI RGGWCCY 1 cut(s) 574
PshBI ATTAAT 1 cut(s) 1731
Psp5II RGGWCCY 1 cut(s) 574
Psp6I CCWGG 3 cut(s) 397, 689, 1616
PspEI GGTNACC 1 cut(s) 267
PspGI CCWGG 3 cut(s) 397, 689, 1616
PspN4I GGNNCC 7 cut(s) 82, 287, 575, 576, 1284, 1510, 1527
PspOMI GGGCCC 1 cut(s) 285
PspPPI RGGWCCY 1 cut(s) 574
PsuI RGATCY 3 cut(s) 996, 1282, 1525
RsaI GTAC 5 cut(s) 227, 583, 854, 1116, 1206
RsaNI GTAC 5 cut(s) 226, 582, 853, 1115, 1205
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 5 cut(s) 363, 507, 810, 1478, 1731
SatI GCNGC 2 cut(s) 97, 1221
ScaI AGTACT 3 cut(s) 583, 854, 1206
SchI GAGTC 4 cut(s) 557, 1056, 1106, 1221
ScrFI CCNGG 4 cut(s) 157, 399, 691, 1618
SduI GDGCHC 4 cut(s) 289, 743, 822, 1449
SfaNI GCATC 3 cut(s) 322, 968, 1315
SfcI CTRYAG 1 cut(s) 1572
SinI GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 2 cut(s) 821, 1024
SmoI CTYRAG 2 cut(s) 821, 1024
SspI AATATT 1 cut(s) 1416
SspMI CTAG 4 cut(s) 593, 650, 878, 1346
StyD4I CCNGG 4 cut(s) 155, 397, 689, 1616
StyI CCWWGG 1 cut(s) 1076
TaaI ACNGT 4 cut(s) 368, 767, 980, 992
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 1128, 1735
TaqII GACCGA 1 cut(s) 1310
TatI WGTACW 3 cut(s) 581, 852, 1204
TfiI GAWTC 3 cut(s) 319, 429, 1019
Tru1I TTAA 5 cut(s) 363, 507, 810, 1478, 1731
Tru9I TTAA 5 cut(s) 363, 507, 810, 1478, 1731
TscAI CASTG 3 cut(s) 430, 985, 1462
TseFI GTSAC 2 cut(s) 267, 1213
TseI GCWGC 2 cut(s) 96, 1220
Tsp45I GTSAC 2 cut(s) 267, 1213
TspDTI ATGAA 4 cut(s) 698, 1032, 1215, 1523
TspRI CASTG 3 cut(s) 430, 985, 1462
Van91I CCANNNNNTGG 1 cut(s) 183
VpaK11BI GGWCC 6 cut(s) 574, 687, 800, 1080, 1293, 1349
VspI ATTAAT 1 cut(s) 1731
XapI RAATTY 2 cut(s) 109, 1305
XceI RCATGY 2 cut(s) 132, 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 585
XspI CTAG 4 cut(s) 593, 650, 878, 1346
ZrmI AGTACT 3 cut(s) 583, 854, 1206
Zsp2I ATGCAT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.