Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001901

Physical Location & Seq

Genomic Coordinates Forward (+)

48841364 .. 48844851

Gene Structure 3488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0383000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGACAACTTCTTTCCACACTTTGAACTATCCTTTCCGCAAATTGGGCTTTGTAAATACACATAAAGCCCTCTACAAGACAAGGTGGAATCAGGGTTTAGCTCTAGCTCTATCCCCAGTTCTCTTACAAACTAGGAAGTTTCCAGAGTATAAGAAGAATTCGGGTTTGAGTACCGCCTGCAGCAATTCTTTTCTGGGTCTACCAAATACAATTGGTATAATTGGAGGGCAATCTGTCAATTCTACTGTTATTTTTCTGAAAAAACTAGTTCAGTGGAGTAAGAATGGAGAAAGTTGCCCTCCTTTTATTCTATGCTCTGATCCTGTGTTAAATAAAGAGCTGTTATTGACACAGAGAAGCTCCTTACCTTGGCTTGACAGTAAAAATAAACGGACTAAACTTGATCCTACTTCAGTTGTGGAGAATCTGAGGAGTAAGAGGATTTATCTTGAAAATTCTGGTGCTCGTTGCATAGTAATGCCTTGTCATATTTCACATTCTTGGCATAATGAAATATCTGATGGATGTTCTGTTCCTTTCCTCCATATGGGTGAGTGTGTTGCCAAGGGGCTCAAGGAAGCAAAGTTGAAGCCACTTGAAGCCAGGAGTCCTTTGCGGATTGGAGTGCTTGCCACTAATGCAACTTTGACAGCAGGATTCTATCAGGAGAAACTGAAAAGGGAGGGATTTGAGGTTGTGTTGCCAGATAAAGCGACCATGGAACACACTGTCATCCCTGCTATTGAAGCTTTTAATAGAAAAGACATAGAGGGGTCACAAAATCTTTTGAGGATTGCAATCCAGGTTCTTCTGGTGAGGGCTGTGAACTCTGTGATTCTTGCCTTTGATGATATGCATGATCTTCTTCCCCGAGATGATCCTCTTATTAAGAAATGCATTGACCCTATGGATGCATTGGCCTGGTCAACCATAAAATGGGCTACATCTGCTGAAAAAGGAACTATAAAGAAGAAAGACAGAGTAGCTGAGTCTCTGGAGAACAGACAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004564 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0016020 GO:0016787 GO:0016798 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0080167 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

337

Amino Acids

37.75

Weight (kDa)

9.48

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp_Glu_race	PF01177	74 - 309	4e-24	Asp/Glu/Hydantoin racemase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13790 AT3G13790 AT3G13790 AT3G13790 AT3G13790
fragaria_vesca	FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33590 FvH4_6g33602 FvH4_6g33602 FvH4_6g33602
malus_domestica	MD09G1192100.v1.1
prunus_persica	Prupe.3G009500_v2.0.a1 Prupe.3G048300_v2.0.a1 Prupe.3G048300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0143501 RchiOBHm_Chr2g0143521
rosa_laevigata	RLG00000020041 RLG00000020043
rosa_multiflora	Rmu_sc0003507.1_g000032 Rmu_sc0005083.1_g000003 Rmu_sc0005083.1_g000014 Rmu_sc0015791.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101770 Rroxscaffold_2G00101800
rosa_rugosa	Rorug02G0382100 Rorug02G0382200 Rorug02G0382200 Rorug02G0382300 Rorug02G0382300 Rorug02G0382600 Rorug02G0382700 Rorug02G0382700 Rorug02G0383000 Rorug02G0383000 Rorug02G0383100
rosa_samantha	Rh2AG435000 Rh2AG435300 Rh2BG442700 Rh2BG442900 Rh2CG421000 Rh2CG421400 Rh2DG452900 Rh2DG453300
rosa_wichuraiana	Rw2G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	936
AccI	GTMKAC	1 cut(s)	199
AciI	CCGC	3 cut(s)	37, 174, 616
AclWI	GGATC	3 cut(s)	314, 398, 872
AcsI	RAATTY	2 cut(s)	157, 454
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	4 cut(s)	43, 369, 547, 936
AgsI	TTSAA	5 cut(s)	25, 452, 589, 599, 746
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	602, 801, 920
AloI	GAACNNNNNNTCC	2 cut(s)	516, 548
AluBI	AGCT	6 cut(s)	101, 107, 340, 360, 749, 986
AluI	AGCT	6 cut(s)	101, 107, 340, 360, 749, 986
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	996
AlwI	GGATC	3 cut(s)	314, 398, 872
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	1 cut(s)	918
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	2 cut(s)	157, 454
AsuHPI	GGTGA	2 cut(s)	563, 826
AvaI	CYCGRG	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	1 cut(s)	515
BciT130I	CCWGG	3 cut(s)	604, 803, 922
BcoDI	GTCTC	1 cut(s)	996
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	3 cut(s)	104, 132, 266
BfmI	CTRYAG	1 cut(s)	178
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	3 cut(s)	604, 803, 922
BmeT110I	CYCGRG	1 cut(s)	870
BmrFI	CCNGG	3 cut(s)	604, 803, 922
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	901
BmuI	ACTGGG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	557
BsaBI	GATNNNNATC	1 cut(s)	797
BsaJI	CCNNGG	3 cut(s)	368, 564, 717
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 369, 547, 936
Bse1I	ACTGG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	797
BseBI	CCWGG	3 cut(s)	604, 803, 922
BseDI	CCNNGG	3 cut(s)	368, 564, 717
BseGI	GGATG	3 cut(s)	530, 732, 916
BseJI	GATNNNNATC	1 cut(s)	797
BseLI	CCNNNNNNNGG	4 cut(s)	43, 369, 547, 936
BseMII	CTCAG	2 cut(s)	419, 978
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	192
BshFI	GGCC	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	870
BslI	CCNNNNNNNGG	4 cut(s)	43, 369, 547, 936
BsmAI	GTCTC	1 cut(s)	996
BsnI	GGCC	1 cut(s)	920
BsoBI	CYCGRG	1 cut(s)	870
Bsp1286I	GDGCHC	2 cut(s)	466, 573
Bsp143I	GATC	4 cut(s)	319, 403, 859, 877
Bsp19I	CCATGG	1 cut(s)	717
BspACI	CCGC	3 cut(s)	37, 174, 616
BspANI	GGCC	1 cut(s)	920
BspCNI	CTCAG	2 cut(s)	420, 979
BspMAI	CTGCAG	1 cut(s)	182
BspPI	GGATC	3 cut(s)	314, 398, 872
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	3 cut(s)	368, 564, 717
BssMI	GATC	4 cut(s)	319, 403, 859, 877
BssT1I	CCWWGG	3 cut(s)	368, 564, 717
Bst2UI	CCWGG	3 cut(s)	604, 803, 922
Bst4CI	ACNGT	3 cut(s)	247, 380, 730
BstC8I	GCNNGC	2 cut(s)	178, 630
BstDEI	CTNAG	2 cut(s)	428, 987
BstDSI	CCRYGG	1 cut(s)	717
BstF5I	GGATG	3 cut(s)	530, 732, 916
BstKTI	GATC	4 cut(s)	322, 406, 862, 880
BstMAI	GTCTC	1 cut(s)	996
BstMBI	GATC	4 cut(s)	319, 403, 859, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 638, 746, 947
BstNI	CCWGG	3 cut(s)	604, 803, 922
BstSCI	CCNGG	3 cut(s)	602, 801, 920
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	920
BtgI	CCRYGG	1 cut(s)	717
BtsCI	GGATG	3 cut(s)	530, 732, 916
BtsIMutI	CAGTG	2 cut(s)	278, 726
Cac8I	GCNNGC	2 cut(s)	178, 630
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	2 cut(s)	718, 857
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	2 cut(s)	428, 987
DpnI	GATC	4 cut(s)	321, 405, 861, 879
DpnII	GATC	4 cut(s)	319, 403, 859, 877
Eco130I	CCWWGG	3 cut(s)	368, 564, 717
Eco24I	GRGCYC	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	870
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	3 cut(s)	602, 801, 920
EcoT14I	CCWWGG	3 cut(s)	368, 564, 717
EcoT22I	ATGCAT	3 cut(s)	858, 899, 916
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	3 cut(s)	368, 564, 717
FaeI	CATG	2 cut(s)	721, 860
FatI	CATG	2 cut(s)	717, 856
FauNDI	CATATG	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	3 cut(s)	537, 719, 923
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	3 cut(s)	104, 132, 266
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	920
Hin1II	CATG	2 cut(s)	721, 860
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	6 cut(s)	88, 424, 607, 657, 835, 989
HphI	GGTGA	2 cut(s)	563, 826
Hpy166II	GTNNAC	3 cut(s)	200, 826, 927
Hpy188I	TCNGA	4 cut(s)	258, 319, 429, 520
Hpy188III	TCNNGA	4 cut(s)	143, 449, 665, 995
Hpy8I	GTNNAC	3 cut(s)	200, 826, 927
HpyCH4III	ACNGT	3 cut(s)	247, 380, 730
HpyCH4V	TGCA	7 cut(s)	180, 471, 641, 797, 856, 897, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 638, 746, 947
HpyF3I	CTNAG	2 cut(s)	428, 987
Hsp92II	CATG	2 cut(s)	721, 860
Kzo9I	GATC	4 cut(s)	319, 403, 859, 877
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	1 cut(s)	901
MaeI	CTAG	3 cut(s)	104, 132, 266
MaeIII	GTNAC	1 cut(s)	774
MalI	GATC	4 cut(s)	321, 405, 861, 879
MboI	GATC	4 cut(s)	319, 403, 859, 877
MboII	GAAGA	5 cut(s)	166, 800, 854, 857, 982
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	466, 573
MluCI	AATT	7 cut(s)	41, 157, 184, 210, 219, 238, 454
MlyI	GAGTC	2 cut(s)	616, 998
Mph1103I	ATGCAT	3 cut(s)	858, 899, 916
MseI	TTAA	4 cut(s)	329, 753, 888, 1012
MslI	CAYNNNNRTG	2 cut(s)	476, 549
MspR9I	CCNGG	3 cut(s)	604, 803, 922
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	3 cut(s)	604, 803, 922
MwoI	GCNNNNNNNGC	4 cut(s)	45, 638, 746, 947
NcoI	CCATGG	1 cut(s)	717
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	4 cut(s)	319, 403, 859, 877
NlaIII	CATG	2 cut(s)	721, 860
NmuCI	GTSAC	1 cut(s)	774
NsiI	ATGCAT	3 cut(s)	858, 899, 916
PfeI	GAWTC	4 cut(s)	88, 424, 657, 835
PflMI	CCANNNNNTGG	1 cut(s)	936
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	2 cut(s)	615, 997
PpsI	GAGTC	2 cut(s)	615, 997
Psp6I	CCWGG	3 cut(s)	602, 801, 920
PspGI	CCWGG	3 cut(s)	602, 801, 920
PstI	CTGCAG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
RseI	CAYNNNNRTG	2 cut(s)	476, 549
SaqAI	TTAA	4 cut(s)	329, 753, 888, 1012
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	4 cut(s)	319, 403, 859, 877
SchI	GAGTC	2 cut(s)	616, 998
ScrFI	CCNGG	3 cut(s)	604, 803, 922
SduI	GDGCHC	2 cut(s)	466, 573
SfaNI	GCATC	1 cut(s)	901
SfcI	CTRYAG	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	476, 549
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	7 cut(s)	41, 157, 184, 210, 219, 238, 454
SsiI	CCGC	3 cut(s)	37, 174, 616
SspMI	CTAG	3 cut(s)	104, 132, 266
StyD4I	CCNGG	3 cut(s)	602, 801, 920
StyI	CCWWGG	3 cut(s)	368, 564, 717
TaaI	ACNGT	3 cut(s)	247, 380, 730
TasI	AATT	7 cut(s)	41, 157, 184, 210, 219, 238, 454
TfiI	GAWTC	4 cut(s)	88, 424, 657, 835
Tru1I	TTAA	4 cut(s)	329, 753, 888, 1012
Tru9I	TTAA	4 cut(s)	329, 753, 888, 1012
TscAI	CASTG	2 cut(s)	278, 733
TseFI	GTSAC	1 cut(s)	774
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	774
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	2 cut(s)	278, 733
Van91I	CCANNNNNTGG	1 cut(s)	936
XapI	RAATTY	2 cut(s)	157, 454
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	3 cut(s)	104, 132, 266
Zsp2I	ATGCAT	3 cut(s)	858, 899, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.