Rh2DG452900

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
65605032 .. 65608254
3223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG452900.1

Sequence Viewer

Length: 1734 bp
ATGGCCATGATGATATCCTCTCTTTGGCAATTCTGCCTTCTTTCACTTTTGCTTTCTTATGCTGTTGTTGAGCTTCAAGCTTCCCACCTTGTCTATAGCGACCTTCAAACTACCCAACTAACTTCAACACAACCCCAAGCTAAAGATCCTTACAGAACTGGTTATCATTTCCAGCCTCCCAAGAACTGGATCAATGGGCCGATGATTTACAAGGGAATTTACCATCTTTTCTACCAATATAATCCCAAAGGTGTAGTTTGGGGCAACATTGTTTGGGCACATTCAACATCAACTGATCTTGTCAACTGGATCCCACATGAAGCTGCTATCTACCCATCACAGCCGTCCGATATCAACGGCTGCTGGTCGGGGTCAGCTACAATCCTTCCCGGAGGCAAGCCGGCCATGTTATACACCGGAATCAATCCCCAAAACCAACAAGTTCAAAACTTGGCATTTCCTAAAAACCTCTCAGACCCTTTTCTTAGGGAATGGGTTAAGGTCCCTCAAAACCCACTAATGGCTCCAACACTAGCTAACCAAGTCAATGCTAGCTCATTTCGGGATCCAACCACTGCATGGCTAGGGCCAGACAAGAGATGGAGGTTAATCATTGGAAGCAAAAGGCACCAAAGGGGATTAGCTATACTCTACAGAAGCAAAGATTTCATGCATTGGACTAAGGCCAAACACCCACTTCATTCAAAAGAGAAAAATGGAATGTGGGAGTGCCCAGATTTTTTCCCAATTTCAAAGACTAGCTCAGTTGGTCTTGACACATCAACAAATGGTCCTAATGTTAAGCATGTGCTCAAGGTTAGCTTGGACAACACCAGGAAAGAGTACTATACAATTGGTACATATAACATCAGCAAGGATATCTATATTCCAGATAAGGGATCAGTTGAGAGTGATTCCGGTTTGAGATATGATTATGGTAAGTTTTATGCTTCAAAAACCTTCTTTGACAGTGCTAAGAACCGCAGGATCTTGTGGGGTTGGATTAATGAATCCTCAAGTGTCAATGGTGACGTCAAGAAAGGATGGTCTGGACTCCAGGCAATTCCAAGGACCATTGTGCTTGACAAGTCTGGCAAACAATTGGTGCAATGGCCAATTGTAGAGCTTGAAAAACTTAGAACAAAGGAGGTCACGTTGCCAAGCACTGTACTTAAGGGAGGATCACTTCATGAAGTATTTGGTGTCACAGCAGCGCAAGCTGATGTAGAAGTCGCATTCGAGATAAGTGATTTCAAGAAAGCAGAAGTATTGGATCCAAGTTGGACTAATCCACAAATTTTGTGCAGCAAAAAGGGTGCCTCGGTGAAAGGCGGTCTTGGACCATTTGGATTGTTGACTTTGGCTTCAAAGGACTTGAAAGAAAACACAGCAGTCTTCTATAGAATTTTCAAGTCTCAAAACAATTACAAGAAATATGTGGTGCTTATGTGCAGTGACCAAAGCAGGTCCTCCCTAAATCAAGATAATGATATGACCACTTATGGGGCATTTGTAAATGTGGATCCTGTTCATGAGAAGCTGTCACTAAGAAGCTTGATTGATCACTCTATAGTGGAGAGCTTTGGTGGAGAAGGCAAGGCGTGCATAACAGCCAGGGTTTATCCGACATTGGCTGTTGATGGTGATGCCCACTTATATGCTTTCAATTATGGAAGTGAGAGTGTCAAAATCGCAGGAAGTGCGTGGAGCTTGAAAACTGCTAAAATAAATTGA

Protein Analysis

577

Amino Acids

64.53

Weight (kDa)

9.19

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 56 - 372 1.3e-101 Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C PF08244 375 - 561 2.5e-23 Glycosyl hydrolases family 32 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1035
Acc36I ACCTGC 1 cut(s) 1455
AccB1I GGYRCC 2 cut(s) 627, 1316
AccB7I CCANNNNNTGG 2 cut(s) 186, 579
AciI CCGC 2 cut(s) 982, 1332
AcoI YGGCCR 3 cut(s) 3, 402, 1112
AcsI RAATTY 3 cut(s) 216, 1296, 1404
AcyI GRCGYC 1 cut(s) 1032
AfaI GTAC 3 cut(s) 845, 859, 1170
AfiI CCNNNNNNNGG 6 cut(s) 24, 186, 520, 579, 896, 1503
AflII CTTAAG 1 cut(s) 1172
AjnI CCWGG 3 cut(s) 833, 1056, 1613
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 1 cut(s) 1419
AoxI GGCC 6 cut(s) 3, 197, 402, 587, 684, 1112
ApeKI GCWGC 4 cut(s) 323, 360, 1211, 1305
ApoI RAATTY 3 cut(s) 216, 1296, 1404
AseI ATTAAT 1 cut(s) 1005
AspLEI GCGC 1 cut(s) 1216
AspS9I GGNCC 7 cut(s) 197, 502, 587, 791, 1071, 1340, 1467
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 3 cut(s) 1040, 1336, 1655
AsuNHI GCTAGC 1 cut(s) 551
AvaII GGWCC 5 cut(s) 502, 791, 1071, 1340, 1467
BaeGI GKGCMC 2 cut(s) 280, 734
BalI TGGCCA 2 cut(s) 5, 1114
BamHI GGATCC 4 cut(s) 309, 565, 1273, 1522
BanI GGYRCC 2 cut(s) 627, 1316
BbsI GAAGAC 1 cut(s) 1387
Bbv12I GWGCWC 1 cut(s) 813
BbvI GCAGC 4 cut(s) 310, 347, 1223, 1317
BccI CCATC 5 cut(s) 231, 343, 594, 1038, 1634
BceAI ACGGC 2 cut(s) 328, 373
BciT130I CCWGG 3 cut(s) 835, 1058, 1615
BclI TGATCA 1 cut(s) 1561
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 1 cut(s) 1419
BfaI CTAG 4 cut(s) 533, 552, 584, 759
BfmI CTRYAG 4 cut(s) 94, 652, 1399, 1569
BfrI CTTAAG 1 cut(s) 1172
BfuAI ACCTGC 1 cut(s) 1455
BisI GCNGC 4 cut(s) 324, 361, 1212, 1306
BlsI GCNGC 4 cut(s) 325, 362, 1213, 1307
BmcAI AGTACT 1 cut(s) 845
Bme1390I CCNGG 4 cut(s) 390, 835, 1058, 1615
Bme18I GGWCC 5 cut(s) 502, 791, 1071, 1340, 1467
BmgT120I GGNCC 7 cut(s) 197, 502, 587, 791, 1071, 1340, 1467
BmiI GGNNCC 8 cut(s) 311, 504, 525, 567, 629, 1275, 1318, 1524
BmrFI CCNGG 4 cut(s) 390, 835, 1058, 1615
BmsI GCATC 1 cut(s) 1636
BmtI GCTAGC 1 cut(s) 555
BpiI GAAGAC 1 cut(s) 1387
BpmI CTGGAG 1 cut(s) 1040
BpuEI CTTGAG 2 cut(s) 797, 1000
BpuMI CCSGG 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 1032
BsaJI CCNNGG 3 cut(s) 1067, 1320, 1614
BsaWI WCCGGW 2 cut(s) 416, 917
BsaXI ACNNNNNCTCC 2 cut(s) 1139, 1169
Bsc4I CCNNNNNNNGG 6 cut(s) 24, 186, 520, 579, 896, 1503
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 3 cut(s) 163, 191, 311
Bse3DI GCAATG 1 cut(s) 1115
BseBI CCWGG 3 cut(s) 835, 1058, 1615
BseDI CCNNGG 3 cut(s) 1067, 1320, 1614
BseGI GGATG 1 cut(s) 1049
BseLI CCNNNNNNNGG 6 cut(s) 24, 186, 520, 579, 896, 1503
BseMI GCAATG 1 cut(s) 1115
BseMII CTCAG 2 cut(s) 486, 777
BseNI ACTGG 3 cut(s) 163, 191, 311
BseSI GKGCMC 2 cut(s) 280, 734
BseXI GCAGC 4 cut(s) 310, 347, 1223, 1317
BsgI GTGCAG 2 cut(s) 1324, 1471
BshFI GGCC 6 cut(s) 5, 199, 404, 589, 686, 1114
BshNI GGYRCC 2 cut(s) 627, 1316
BsiHKAI GWGCWC 1 cut(s) 813
BsiSI CCGG 4 cut(s) 390, 401, 417, 918
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 6 cut(s) 24, 186, 520, 579, 896, 1503
BsmAI GTCTC 1 cut(s) 1419
BsmFI GGGAC 1 cut(s) 488
BsmI GAATGC 1 cut(s) 1235
BsnI GGCC 6 cut(s) 5, 199, 404, 589, 686, 1114
Bsp1286I GDGCHC 3 cut(s) 280, 734, 813
BspACI CCGC 2 cut(s) 982, 1332
BspANI GGCC 6 cut(s) 5, 199, 404, 589, 686, 1114
BspCNI CTCAG 2 cut(s) 485, 776
BspHI TCATGA 2 cut(s) 1189, 1531
BspLI GGNNCC 8 cut(s) 311, 504, 525, 567, 629, 1275, 1318, 1524
BspMI ACCTGC 1 cut(s) 1455
BspOI GCTAGC 1 cut(s) 555
BspT107I GGYRCC 2 cut(s) 627, 1316
BspTI CTTAAG 1 cut(s) 1172
BsrDI GCAATG 1 cut(s) 1115
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 3 cut(s) 163, 191, 311
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 3 cut(s) 1067, 1320, 1614
BssNI GRCGYC 1 cut(s) 1032
BssT1I CCWWGG 1 cut(s) 1067
Bst2UI CCWGG 3 cut(s) 835, 1058, 1615
Bst4CI ACNGT 2 cut(s) 971, 1168
BstACI GRCGYC 1 cut(s) 1032
BstAFI CTTAAG 1 cut(s) 1172
BstAPI GCANNNNNTGC 2 cut(s) 1602, 1700
BstC8I GCNNGC 5 cut(s) 398, 402, 553, 1218, 1603
BstDEI CTNAG 7 cut(s) 472, 485, 681, 763, 975, 1136, 1547
BstF5I GGATG 1 cut(s) 1049
BstHHI GCGC 1 cut(s) 1216
BstMAI GTCTC 1 cut(s) 1419
BstMWI GCNNNNNNNGC 3 cut(s) 1217, 1602, 1700
BstNI CCWGG 3 cut(s) 835, 1058, 1615
BstNSI RCATGY 1 cut(s) 809
BstSCI CCNGG 4 cut(s) 388, 833, 1056, 1613
BstSFI CTRYAG 4 cut(s) 94, 652, 1399, 1569
BstSLI GKGCMC 2 cut(s) 280, 734
BstV1I GCAGC 4 cut(s) 310, 347, 1223, 1317
BstV2I GAAGAC 1 cut(s) 1387
BstX2I RGATCY 6 cut(s) 145, 309, 565, 987, 1273, 1522
BstYI RGATCY 6 cut(s) 145, 309, 565, 987, 1273, 1522
BsuRI GGCC 6 cut(s) 5, 199, 404, 589, 686, 1114
BtsCI GGATG 1 cut(s) 1049
BtsI GCAGTG 2 cut(s) 573, 1459
BtsIMutI CAGTG 4 cut(s) 573, 976, 1164, 1459
BveI ACCTGC 1 cut(s) 1455
Cac8I GCNNGC 5 cut(s) 398, 402, 553, 1218, 1603
CciI TCATGA 2 cut(s) 1189, 1531
CfoI GCGC 1 cut(s) 1216
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 7 cut(s) 197, 502, 587, 791, 1071, 1340, 1467
Csp6I GTAC 3 cut(s) 844, 858, 1169
CspCI CAANNNNNGTGG 2 cut(s) 1281, 1316
CviAII CATG 8 cut(s) 7, 317, 406, 579, 670, 806, 1190, 1532
CviQI GTAC 3 cut(s) 844, 858, 1169
DdeI CTNAG 7 cut(s) 472, 485, 681, 763, 975, 1136, 1547
EaeI YGGCCR 3 cut(s) 3, 402, 1112
Eco130I CCWWGG 1 cut(s) 1067
Eco32I GATATC 3 cut(s) 15, 352, 880
Eco47I GGWCC 5 cut(s) 502, 791, 1071, 1340, 1467
EcoO109I RGGNCCY 2 cut(s) 502, 1467
EcoRII CCWGG 3 cut(s) 833, 1056, 1613
EcoRV GATATC 3 cut(s) 15, 352, 880
EcoT14I CCWWGG 1 cut(s) 1067
EcoT22I ATGCAT 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 1067
FaeI CATG 8 cut(s) 10, 320, 409, 582, 673, 809, 1193, 1535
FalI AAGNNNNNCTT 4 cut(s) 806, 838, 1320, 1352
FaqI GGGAC 1 cut(s) 488
FatI CATG 8 cut(s) 6, 316, 405, 578, 669, 805, 1189, 1531
FbaI TGATCA 1 cut(s) 1561
Fnu4HI GCNGC 4 cut(s) 324, 361, 1212, 1306
FokI GGATG 1 cut(s) 1056
Fsp4HI GCNGC 4 cut(s) 324, 361, 1212, 1306
FspBI CTAG 4 cut(s) 533, 552, 584, 759
GlaI GCGC 1 cut(s) 1215
GluI GCNGC 4 cut(s) 324, 361, 1212, 1306
GsuI CTGGAG 1 cut(s) 1040
HaeIII GGCC 6 cut(s) 5, 199, 404, 589, 686, 1114
HapII CCGG 4 cut(s) 390, 401, 417, 918
HhaI GCGC 1 cut(s) 1216
Hin1I GRCGYC 1 cut(s) 1032
Hin1II CATG 8 cut(s) 10, 320, 409, 582, 673, 809, 1193, 1535
Hin6I GCGC 1 cut(s) 1214
HinP1I GCGC 1 cut(s) 1214
HincII GTYRAC 2 cut(s) 304, 1356
HindII GTYRAC 2 cut(s) 304, 1356
HindIII AAGCTT 2 cut(s) 78, 1552
HinfI GANTC 4 cut(s) 420, 914, 1010, 1053
HpaII CCGG 4 cut(s) 390, 401, 417, 918
HphI GGTGA 3 cut(s) 1040, 1336, 1655
Hpy166II GTNNAC 2 cut(s) 304, 1356
Hpy188I TCNGA 3 cut(s) 349, 475, 1626
Hpy8I GTNNAC 2 cut(s) 304, 1356
HpyAV CCTTC 5 cut(s) 47, 113, 395, 970, 1586
HpyCH4III ACNGT 2 cut(s) 971, 1168
HpyCH4IV ACGT 2 cut(s) 1032, 1154
HpyCH4V TGCA 6 cut(s) 578, 673, 1108, 1305, 1452, 1605
HpyF10VI GCNNNNNNNGC 3 cut(s) 1217, 1602, 1700
HpyF3I CTNAG 7 cut(s) 472, 485, 681, 763, 975, 1136, 1547
HpySE526I ACGT 2 cut(s) 1032, 1154
Hsp92I GRCGYC 1 cut(s) 1032
Hsp92II CATG 8 cut(s) 10, 320, 409, 582, 673, 809, 1193, 1535
HspAI GCGC 1 cut(s) 1214
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 1561
LmnI GCTCC 2 cut(s) 529, 1707
Lsp1109I GCAGC 4 cut(s) 310, 347, 1223, 1317
LweI GCATC 1 cut(s) 1636
MaeI CTAG 4 cut(s) 533, 552, 584, 759
MaeII ACGT 2 cut(s) 1032, 1154
MaeIII GTNAC 5 cut(s) 1028, 1150, 1204, 1454, 1542
MboII GAAGA 1 cut(s) 1387
MfeI CAATTG 3 cut(s) 852, 1100, 1116
MflI RGATCY 6 cut(s) 145, 309, 565, 987, 1273, 1522
MhlI GDGCHC 3 cut(s) 280, 734, 813
MlsI TGGCCA 2 cut(s) 5, 1114
MluNI TGGCCA 2 cut(s) 5, 1114
MlyI GAGTC 1 cut(s) 1047
MmeI TCCRAC 5 cut(s) 551, 593, 980, 1262, 1649
Mox20I TGGCCA 2 cut(s) 5, 1114
Mph1103I ATGCAT 1 cut(s) 675
MroNI GCCGGC 1 cut(s) 400
MscI TGGCCA 2 cut(s) 5, 1114
MseI TTAA 5 cut(s) 498, 608, 801, 1005, 1173
MslI CAYNNNNRTG 1 cut(s) 1656
Msp20I TGGCCA 2 cut(s) 5, 1114
MspCI CTTAAG 1 cut(s) 1172
MspI CCGG 4 cut(s) 390, 401, 417, 918
MspR9I CCNGG 4 cut(s) 390, 835, 1058, 1615
MunI CAATTG 3 cut(s) 852, 1100, 1116
Mva1269I GAATGC 1 cut(s) 1235
MvaI CCWGG 3 cut(s) 835, 1058, 1615
MwoI GCNNNNNNNGC 3 cut(s) 1217, 1602, 1700
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 1 cut(s) 390
NgoMIV GCCGGC 1 cut(s) 400
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 8 cut(s) 10, 320, 409, 582, 673, 809, 1193, 1535
NlaIV GGNNCC 8 cut(s) 311, 504, 525, 567, 629, 1275, 1318, 1524
NmuCI GTSAC 5 cut(s) 1028, 1150, 1204, 1454, 1542
NsiI ATGCAT 1 cut(s) 675
NspI RCATGY 1 cut(s) 809
PagI TCATGA 2 cut(s) 1189, 1531
PctI GAATGC 1 cut(s) 1235
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 420, 914, 1010
PflMI CCANNNNNTGG 2 cut(s) 186, 579
PfoI TCCNGGA 1 cut(s) 388
PkrI GCNGC 4 cut(s) 325, 362, 1213, 1307
PleI GAGTC 1 cut(s) 1047
PpsI GAGTC 1 cut(s) 1047
PpuMI RGGWCCY 2 cut(s) 502, 1467
PshBI ATTAAT 1 cut(s) 1005
Psp5II RGGWCCY 2 cut(s) 502, 1467
Psp6I CCWGG 3 cut(s) 833, 1056, 1613
PspGI CCWGG 3 cut(s) 833, 1056, 1613
PspN4I GGNNCC 8 cut(s) 311, 504, 525, 567, 629, 1275, 1318, 1524
PspPI GGNCC 7 cut(s) 197, 502, 587, 791, 1071, 1340, 1467
PspPPI RGGWCCY 2 cut(s) 502, 1467
PsuI RGATCY 6 cut(s) 145, 309, 565, 987, 1273, 1522
RsaI GTAC 3 cut(s) 845, 859, 1170
RsaNI GTAC 3 cut(s) 844, 858, 1169
RseI CAYNNNNRTG 1 cut(s) 1656
SaqAI TTAA 5 cut(s) 498, 608, 801, 1005, 1173
SatI GCNGC 4 cut(s) 324, 361, 1212, 1306
Sau96I GGNCC 7 cut(s) 197, 502, 587, 791, 1071, 1340, 1467
ScaI AGTACT 1 cut(s) 845
SchI GAGTC 1 cut(s) 1047
ScrFI CCNGG 4 cut(s) 390, 835, 1058, 1615
SduI GDGCHC 3 cut(s) 280, 734, 813
SfaNI GCATC 1 cut(s) 1636
SfcI CTRYAG 4 cut(s) 94, 652, 1399, 1569
SinI GGWCC 5 cut(s) 502, 791, 1071, 1340, 1467
SmiMI CAYNNNNRTG 1 cut(s) 1656
SmlI CTYRAG 3 cut(s) 812, 1015, 1172
SmoI CTYRAG 3 cut(s) 812, 1015, 1172
SsiI CCGC 2 cut(s) 982, 1332
SspMI CTAG 4 cut(s) 533, 552, 584, 759
StyD4I CCNGG 4 cut(s) 388, 833, 1056, 1613
StyI CCWWGG 1 cut(s) 1067
TaaI ACNGT 2 cut(s) 971, 1168
TaiI ACGT 2 cut(s) 1035, 1157
TaqI TCGA 1 cut(s) 1239
TatI WGTACW 2 cut(s) 843, 1168
TfiI GAWTC 3 cut(s) 420, 914, 1010
Tru1I TTAA 5 cut(s) 498, 608, 801, 1005, 1173
Tru9I TTAA 5 cut(s) 498, 608, 801, 1005, 1173
TscAI CASTG 4 cut(s) 580, 976, 1171, 1459
TseFI GTSAC 5 cut(s) 1028, 1150, 1204, 1454, 1542
TseI GCWGC 4 cut(s) 323, 360, 1211, 1305
Tsp45I GTSAC 5 cut(s) 1028, 1150, 1204, 1454, 1542
TspDTI ATGAA 7 cut(s) 333, 658, 689, 1023, 1178, 1206, 1520
TspRI CASTG 4 cut(s) 580, 976, 1171, 1459
Van91I CCANNNNNTGG 2 cut(s) 186, 579
Vha464I CTTAAG 1 cut(s) 1172
VpaK11BI GGWCC 5 cut(s) 502, 791, 1071, 1340, 1467
VspI ATTAAT 1 cut(s) 1005
XapI RAATTY 3 cut(s) 216, 1296, 1404
XceI RCATGY 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 2 cut(s) 576, 597
XspI CTAG 4 cut(s) 533, 552, 584, 759
ZraI GACGTC 1 cut(s) 1033
ZrmI AGTACT 1 cut(s) 845
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.