AT3G14880

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004319
Physical Location & Seq
Forward (+)
5006526 .. 5008037
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14880.2

Sequence Viewer

Length: 735 bp
ATGAGCCAAGAGACAGCGATAGCAAGCTTCAAGAAATTCCAACAGTCATGGATCGAGCAGCTACGAAACCACCTGAACCACCTCCGCTCCGCCCAAAACCATCACCGGAACTCTGCTACCGGTGATGAGGAACGGTTAAGGGAGGCTGTGGACAGAGTGATGGAACACTTTAGAGAATATCACAGGGCCAAGTGGGCTGCGACGGATAAAGACGTCATCGAAGTTATGGCTTCTCCTTGGGCTTCAGCTCTTGAACGGTCGCTTCAGTGGGTCGGTGGTTGGCGACCAACCACCTTGTTCCATCTGGTTTACACTGAGTCGAGTATTTTATTTGAGTCTCGTATCGTTGATATACTTCGTGGCTTTCGCACCGGTGATCTCAGTGATCTCTCCCCTTCTCAGTTCAGGGTTCCATTTGTCAAAGGCAGGACGGTAAGTGAGCTACAATGTGAGACCGTGAAGGAAGAGAATGCGATAACGGAAGAGTTGTCGGAGTGGCAAGACGATGCGAGTGACCTTGTCATGGGGACATCGTCAGATCCCGACCAGAGGATCCGACGGCTAGCAGAAATCGTCCACCGAACTGATGATCTGCGACTGAGAACGATCACACGTGTGGTGGAGGTCTTGAGTCCGCTCCAACAAGCGGAGTTTCTTGTCGCTGCGGCTGAGCTTCGTACAGGCGTTGCTGGTTGGGGGACTAGCCACGACCGTCGTCGAAGTTCCGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

244

Amino Acids

28.1

Weight (kDa)

5.88

Isoelectric Point (pI)

60.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 24 - 105 7.8e-28 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccBSI CCGCTC 2 cut(s) 87, 637
AciI CCGC 5 cut(s) 85, 90, 635, 647, 665
AclWI GGATC 4 cut(s) 59, 533, 547, 560
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 2 cut(s) 228, 248
AcvI CACGTG 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 1 cut(s) 679
AfiI CCNNNNNNNGG 3 cut(s) 523, 549, 646
AflIII ACRYGT 2 cut(s) 611, 613
AgeI ACCGGT 2 cut(s) 119, 371
AgsI TTSAA 2 cut(s) 31, 254
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 5 cut(s) 27, 61, 248, 442, 673
AluI AGCT 5 cut(s) 27, 61, 248, 442, 673
Alw26I GTCTC 3 cut(s) 5, 342, 446
AlwI GGATC 4 cut(s) 59, 533, 547, 560
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 3 cut(s) 58, 197, 662
ApoI RAATTY 1 cut(s) 35
AsiGI ACCGGT 2 cut(s) 119, 371
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 95, 134, 386
AsuNHI GCTAGC 1 cut(s) 562
BamHI GGATCC 1 cut(s) 552
BbrPI CACGTG 1 cut(s) 614
BbvI GCAGC 3 cut(s) 70, 184, 649
BccI CCATC 3 cut(s) 108, 154, 309
BceAI ACGGC 1 cut(s) 575
BcoDI GTCTC 3 cut(s) 5, 342, 446
BfaI CTAG 2 cut(s) 563, 702
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 4 cut(s) 59, 198, 663, 666
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 4 cut(s) 60, 199, 664, 667
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 411, 554
BmsI GCATC 1 cut(s) 496
BmtI GCTAGC 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 714
Bpu1102I GCTNAGC 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 649
BsaAI YACGTR 1 cut(s) 614
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 236
BsaWI WCCGGW 3 cut(s) 105, 119, 371
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 3 cut(s) 523, 549, 646
Bse118I RCCGGY 2 cut(s) 119, 371
BseDI CCNNGG 1 cut(s) 236
BseLI CCNNNNNNNGG 3 cut(s) 523, 549, 646
BseMII CTCAG 5 cut(s) 306, 394, 413, 590, 660
BseXI GCAGC 3 cut(s) 70, 184, 649
Bsh1285I CGRYCG 2 cut(s) 260, 712
BshFI GGCC 1 cut(s) 188
BshTI ACCGGT 2 cut(s) 119, 371
BsiEI CGRYCG 2 cut(s) 260, 712
BsiSI CCGG 3 cut(s) 106, 120, 372
BslFI GGGAC 2 cut(s) 541, 712
BslI CCNNNNNNNGG 3 cut(s) 523, 549, 646
BsmAI GTCTC 3 cut(s) 5, 342, 446
BsmFI GGGAC 2 cut(s) 541, 712
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 1 cut(s) 188
Bso31I GGTCTC 1 cut(s) 446
Bsp143I GATC 7 cut(s) 51, 376, 385, 538, 552, 589, 606
Bsp1720I GCTNAGC 1 cut(s) 669
BspACI CCGC 5 cut(s) 85, 90, 635, 647, 665
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 5 cut(s) 307, 393, 412, 591, 661
BspLI GGNNCC 2 cut(s) 411, 554
BspOI GCTAGC 1 cut(s) 566
BspPI GGATC 4 cut(s) 59, 533, 547, 560
BspTNI GGTCTC 1 cut(s) 446
BsrBI CCGCTC 2 cut(s) 87, 637
BsrFI RCCGGY 2 cut(s) 119, 371
BssAI RCCGGY 2 cut(s) 119, 371
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 7 cut(s) 51, 376, 385, 538, 552, 589, 606
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 236
Bst4CI ACNGT 6 cut(s) 45, 135, 258, 433, 457, 713
Bst6I CTCTTC 2 cut(s) 459, 477
BstACI GRCGYC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 25, 564
BstDEI CTNAG 5 cut(s) 315, 380, 399, 599, 669
BstKTI GATC 7 cut(s) 54, 379, 388, 541, 555, 592, 609
BstMAI GTCTC 3 cut(s) 5, 342, 446
BstMBI GATC 7 cut(s) 51, 376, 385, 538, 552, 589, 606
BstMCI CGRYCG 2 cut(s) 260, 712
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstPAI GACNNNNGTC 1 cut(s) 714
BstV1I GCAGC 3 cut(s) 70, 184, 649
BstX2I RGATCY 2 cut(s) 538, 552
BstYI RGATCY 2 cut(s) 538, 552
BsuRI GGCC 1 cut(s) 188
BtsIMutI CAGTG 3 cut(s) 272, 312, 388
Cac8I GCNNGC 2 cut(s) 25, 564
Cfr10I RCCGGY 2 cut(s) 119, 371
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 678
CspAI ACCGGT 2 cut(s) 119, 371
CviAII CATG 2 cut(s) 48, 523
CviQI GTAC 1 cut(s) 678
DdeI CTNAG 5 cut(s) 315, 380, 399, 599, 669
DpnI GATC 7 cut(s) 53, 378, 387, 540, 554, 591, 608
DpnII GATC 7 cut(s) 51, 376, 385, 538, 552, 589, 606
Eam1104I CTCTTC 2 cut(s) 459, 477
EarI CTCTTC 2 cut(s) 459, 477
EciI GGCGGA 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 446
Eco57I CTGAAG 2 cut(s) 228, 248
Eco72I CACGTG 1 cut(s) 614
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 2 cut(s) 51, 526
FaiI YATR 4 cut(s) 49, 227, 353, 524
FaqI GGGAC 2 cut(s) 541, 712
FatI CATG 2 cut(s) 47, 522
Fnu4HI GCNGC 4 cut(s) 59, 198, 663, 666
Fsp4HI GCNGC 4 cut(s) 59, 198, 663, 666
FspBI CTAG 2 cut(s) 563, 702
GluI GCNGC 4 cut(s) 59, 198, 663, 666
HaeIII GGCC 1 cut(s) 188
HapII CCGG 3 cut(s) 106, 120, 372
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 2 cut(s) 51, 526
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 3 cut(s) 317, 335, 631
HpaII CCGG 3 cut(s) 106, 120, 372
HphI GGTGA 3 cut(s) 95, 134, 386
Hpy166II GTNNAC 3 cut(s) 151, 310, 577
Hpy188I TCNGA 4 cut(s) 493, 538, 557, 727
Hpy188III TCNNGA 4 cut(s) 31, 251, 542, 628
Hpy8I GTNNAC 3 cut(s) 151, 310, 577
Hpy99I CGWCG 4 cut(s) 205, 561, 717, 720
HpyAV CCTTC 2 cut(s) 405, 454
HpyCH4III ACNGT 6 cut(s) 45, 135, 258, 433, 457, 713
HpyCH4IV ACGT 2 cut(s) 213, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 5 cut(s) 315, 380, 399, 599, 669
HpySE526I ACGT 2 cut(s) 213, 613
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 51, 526
Kzo9I GATC 7 cut(s) 51, 376, 385, 538, 552, 589, 606
LmnI GCTCC 2 cut(s) 92, 642
Lsp1109I GCAGC 3 cut(s) 70, 184, 649
LweI GCATC 1 cut(s) 496
MaeI CTAG 2 cut(s) 563, 702
MaeII ACGT 2 cut(s) 213, 613
MaeIII GTNAC 1 cut(s) 512
MalI GATC 7 cut(s) 53, 378, 387, 540, 554, 591, 608
MbiI CCGCTC 2 cut(s) 87, 637
MboI GATC 7 cut(s) 51, 376, 385, 538, 552, 589, 606
MboII GAAGA 2 cut(s) 476, 494
MflI RGATCY 2 cut(s) 538, 552
MluCI AATT 1 cut(s) 35
MlyI GAGTC 3 cut(s) 326, 344, 640
MmeI TCCRAC 4 cut(s) 64, 471, 580, 664
MnlI CCTC 5 cut(s) 92, 121, 136, 543, 616
MseI TTAA 2 cut(s) 137, 733
MslI CAYNNNNRTG 1 cut(s) 614
MspI CCGG 3 cut(s) 106, 120, 372
Mva1269I GAATGC 1 cut(s) 475
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 7 cut(s) 51, 376, 385, 538, 552, 589, 606
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 2 cut(s) 51, 526
NlaIV GGNNCC 2 cut(s) 411, 554
NmuCI GTSAC 1 cut(s) 512
OliI CACNNNNGTG 1 cut(s) 614
PctI GAATGC 1 cut(s) 475
PflFI GACNNNGTC 2 cut(s) 518, 532
PinAI ACCGGT 2 cut(s) 119, 371
PkrI GCNGC 4 cut(s) 60, 199, 664, 667
PleI GAGTC 3 cut(s) 325, 343, 639
PmaCI CACGTG 1 cut(s) 614
PmlI CACGTG 1 cut(s) 614
PpsI GAGTC 3 cut(s) 325, 343, 639
Ppu21I YACGTR 1 cut(s) 614
PshAI GACNNNNGTC 1 cut(s) 714
PspCI CACGTG 1 cut(s) 614
PspN4I GGNNCC 2 cut(s) 411, 554
PspPI GGNCC 1 cut(s) 186
PsuI RGATCY 2 cut(s) 538, 552
PsyI GACNNNGTC 2 cut(s) 518, 532
RsaI GTAC 1 cut(s) 679
RsaNI GTAC 1 cut(s) 678
RseI CAYNNNNRTG 1 cut(s) 614
SaqAI TTAA 2 cut(s) 137, 733
SatI GCNGC 4 cut(s) 59, 198, 663, 666
Sau3AI GATC 7 cut(s) 51, 376, 385, 538, 552, 589, 606
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 3 cut(s) 326, 344, 640
SfaNI GCATC 1 cut(s) 496
SgrAI CRCCGGYG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 1 cut(s) 628
SmoI CTYRAG 1 cut(s) 628
Sse9I AATT 1 cut(s) 35
SsiI CCGC 5 cut(s) 85, 90, 635, 647, 665
SspMI CTAG 2 cut(s) 563, 702
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 6 cut(s) 45, 135, 258, 433, 457, 713
TaiI ACGT 2 cut(s) 216, 616
TaqI TCGA 4 cut(s) 54, 219, 320, 718
TasI AATT 1 cut(s) 35
TauI GCSGC 1 cut(s) 668
Tru1I TTAA 2 cut(s) 137, 733
Tru9I TTAA 2 cut(s) 137, 733
TscAI CASTG 3 cut(s) 272, 319, 388
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 3 cut(s) 58, 197, 662
Tsp45I GTSAC 1 cut(s) 512
TspGWI ACGGA 2 cut(s) 218, 494
TspRI CASTG 3 cut(s) 272, 319, 388
Tth111I GACNNNGTC 2 cut(s) 518, 532
XapI RAATTY 1 cut(s) 35
XspI CTAG 2 cut(s) 563, 702
ZraI GACGTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.