Rh2BG312000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004319
Physical Location & Seq
Forward (+)
36659209 .. 36661074
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG312000.1

Sequence Viewer

Length: 831 bp
ATGGCTGGAGACAGCATTGTTCCTAAGCCTGAGCCTGAGCATGAGAAGGAGGGTTTTCAGGCCTTCTTCGAGTGCTGGATTTCTGAACAAAACCAAAACCTCGAGGACCTCGTCGTTGCCTCCAAAAGGCACCAAAACAAAGCTGCAGACGACAATGGTGATGATGATCAGGTGTTGTTAAGTTCATTGGTAGAGGGAGTGATGAAACATTATGAATCTTACTACAATGCAAAGTCGCAGTGGGTCGAGCAAGACGCACTGGAAATGTTGTCTCCGCCATGGACGAGCTCATTGGAACATGCATTCCTTTGGTTAGGTGGCTGGCGACCAAGCATGGCTTTTCATTTGCTCTACTCAAAGTCTGGGATGCAGCTAGAGGCTTGTTTTGCTGAGTTGATGCGAGGGTCGAGCTTGAGCACCGGTGACTTGGGTGATCTCTCACAGTGCCAGCTCACCATGGTGGACAAGTTGCAAAGGAGGACTATCGAGGAGGAGAAGCACGTATCGGAAAAGATGGCCAAACTTCAGGAGACTATGGCTGACACTGCAATGGTTGAGCTGTCGCATGTGGTCTCCGAGATGATGAGGAACAATAATGGCCATGAAGAAGGAATTGATGATCAAGAGAAGCGAATTGAGTCCACTCTAGCTTCCAAGGAGGAAGGTTTGGAGAAGATTTTGCACAAGGCTGATGACTTAAGATTGAGAACACTTAATAACATCACACAAATTCTGAGTTCAATCCAGGCCGTTCATTTCTTGATTGCTGCTGCAGAGTTGCACTTGAGGCTTCATGACTGGGGCAAAATGAAAGACGCCTCAAGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

276

Amino Acids

31.42

Weight (kDa)

5.0

Isoelectric Point (pI)

53.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 49 - 119 1.8e-27 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 129
AciI CCGC 1 cut(s) 275
AcoI YGGCCR 2 cut(s) 516, 598
AcsI RAATTY 1 cut(s) 729
AcuI CTGAAG 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 816
AfiI CCNNNNNNNGG 1 cut(s) 126
AflII CTTAAG 1 cut(s) 697
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 1 cut(s) 741
AjnI CCWGG 1 cut(s) 744
AleI CACNNNNGTG 1 cut(s) 458
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 7 cut(s) 143, 288, 373, 411, 451, 559, 650
AluI AGCT 7 cut(s) 143, 288, 373, 411, 451, 559, 650
Alw21I GWGCWC 2 cut(s) 290, 419
Alw26I GTCTC 4 cut(s) 3, 276, 524, 577
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 4 cut(s) 60, 516, 598, 747
ApeKI GCWGC 4 cut(s) 143, 370, 767, 770
ApoI RAATTY 1 cut(s) 729
AsiGI ACCGGT 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 4 cut(s) 170, 434, 443, 445
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 106
BalI TGGCCA 2 cut(s) 518, 600
BanI GGYRCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 290
Bbv12I GWGCWC 2 cut(s) 290, 419
BbvI GCAGC 4 cut(s) 130, 382, 754, 757
BccI CCATC 1 cut(s) 508
BceAI ACGGC 1 cut(s) 734
BciT130I CCWGG 1 cut(s) 746
BclI TGATCA 2 cut(s) 166, 619
BcoDI GTCTC 4 cut(s) 3, 276, 524, 577
BfaI CTAG 2 cut(s) 374, 647
BfmI CTRYAG 2 cut(s) 144, 771
BfrI CTTAAG 1 cut(s) 697
BisI GCNGC 4 cut(s) 144, 371, 768, 771
BlsI GCNGC 4 cut(s) 145, 372, 769, 772
Bme1390I CCNGG 1 cut(s) 746
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 746
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 2 cut(s) 357, 387
BmuI ACTGGG 1 cut(s) 808
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 3 cut(s) 24, 30, 36
BpuEI CTTGAG 3 cut(s) 433, 805, 805
BsaAI YACGTR 1 cut(s) 502
BsaBI GATNNNNATC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 3 cut(s) 278, 456, 654
BsaWI WCCGGW 1 cut(s) 419
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 264, 803
Bse3DI GCAATG 1 cut(s) 555
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 1 cut(s) 746
BseDI CCNNGG 3 cut(s) 278, 456, 654
BseGI GGATG 1 cut(s) 372
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 4 cut(s) 21, 27, 381, 725
BseNI ACTGG 2 cut(s) 264, 803
BseRI GAGGAG 2 cut(s) 503, 506
BseXI GCAGC 4 cut(s) 130, 382, 754, 757
BshFI GGCC 4 cut(s) 62, 518, 600, 749
BshNI GGYRCC 1 cut(s) 129
BshTI ACCGGT 1 cut(s) 419
BsiHKAI GWGCWC 2 cut(s) 290, 419
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 4 cut(s) 3, 276, 524, 577
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 4 cut(s) 62, 518, 600, 749
Bso31I GGTCTC 1 cut(s) 577
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 290, 419
Bsp143I GATC 3 cut(s) 166, 433, 619
Bsp19I CCATGG 2 cut(s) 278, 456
BspACI CCGC 1 cut(s) 275
BspANI GGCC 4 cut(s) 62, 518, 600, 749
BspCNI CTCAG 4 cut(s) 22, 28, 382, 726
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 1 cut(s) 131
BspMAI CTGCAG 2 cut(s) 148, 775
BspT107I GGYRCC 1 cut(s) 129
BspTI CTTAAG 1 cut(s) 697
BspTNI GGTCTC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 2 cut(s) 264, 803
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 3 cut(s) 278, 456, 654
BssMI GATC 3 cut(s) 166, 433, 619
BssNI GRCGYC 1 cut(s) 816
BssT1I CCWWGG 3 cut(s) 278, 456, 654
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 1 cut(s) 444
BstACI GRCGYC 1 cut(s) 816
BstAFI CTTAAG 1 cut(s) 697
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 2 cut(s) 323, 449
BstDEI CTNAG 5 cut(s) 24, 30, 36, 390, 734
BstDSI CCRYGG 2 cut(s) 278, 456
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 372
BstKTI GATC 3 cut(s) 169, 436, 622
BstMAI GTCTC 4 cut(s) 3, 276, 524, 577
BstMBI GATC 3 cut(s) 166, 433, 619
BstMWI GCNNNNNNNGC 3 cut(s) 386, 545, 787
BstNI CCWGG 1 cut(s) 746
BstNSI RCATGY 2 cut(s) 302, 569
BstSCI CCNGG 1 cut(s) 744
BstSFI CTRYAG 2 cut(s) 144, 771
BstV1I GCAGC 4 cut(s) 130, 382, 754, 757
BsuRI GGCC 4 cut(s) 62, 518, 600, 749
BtgI CCRYGG 2 cut(s) 278, 456
BtsCI GGATG 1 cut(s) 372
BtsI GCAGTG 2 cut(s) 245, 543
BtsIMutI CAGTG 4 cut(s) 245, 257, 449, 543
Cac8I GCNNGC 2 cut(s) 323, 449
CciI TCATGA 1 cut(s) 793
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 106
CseI GACGC 2 cut(s) 263, 824
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 8 cut(s) 41, 279, 299, 334, 457, 566, 602, 794
DdeI CTNAG 5 cut(s) 24, 30, 36, 390, 734
DpnI GATC 3 cut(s) 168, 435, 621
DpnII GATC 3 cut(s) 166, 433, 619
EaeI YGGCCR 2 cut(s) 516, 598
EciI GGCGGA 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 288
Eco130I CCWWGG 3 cut(s) 278, 456, 654
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 106
Eco53kI GAGCTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 744
EcoT14I CCWWGG 3 cut(s) 278, 456, 654
EcoT22I ATGCAT 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 3 cut(s) 278, 456, 654
FaeI CATG 8 cut(s) 44, 282, 302, 337, 460, 569, 605, 797
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FatI CATG 8 cut(s) 40, 278, 298, 333, 456, 565, 601, 793
FbaI TGATCA 2 cut(s) 166, 619
Fnu4HI GCNGC 4 cut(s) 144, 371, 768, 771
FokI GGATG 1 cut(s) 379
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 4 cut(s) 144, 371, 768, 771
FspBI CTAG 2 cut(s) 374, 647
GluI GCNGC 4 cut(s) 144, 371, 768, 771
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 4 cut(s) 62, 518, 600, 749
HapII CCGG 1 cut(s) 420
HgaI GACGC 2 cut(s) 263, 824
Hin1I GRCGYC 1 cut(s) 816
Hin1II CATG 8 cut(s) 44, 282, 302, 337, 460, 569, 605, 797
HinfI GANTC 2 cut(s) 215, 638
HpaII CCGG 1 cut(s) 420
HphI GGTGA 4 cut(s) 170, 434, 443, 445
Hpy166II GTNNAC 2 cut(s) 463, 642
Hpy188I TCNGA 4 cut(s) 85, 508, 577, 735
Hpy188III TCNNGA 5 cut(s) 527, 623, 760, 794, 822
Hpy8I GTNNAC 2 cut(s) 463, 642
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 4 cut(s) 40, 73, 602, 656
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 9 cut(s) 146, 230, 302, 370, 472, 548, 682, 773, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 545, 787
HpyF3I CTNAG 5 cut(s) 24, 30, 36, 390, 734
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 816
Hsp92II CATG 8 cut(s) 44, 282, 302, 337, 460, 569, 605, 797
Ksp22I TGATCA 2 cut(s) 166, 619
Kzo9I GATC 3 cut(s) 166, 433, 619
Lsp1109I GCAGC 4 cut(s) 130, 382, 754, 757
LweI GCATC 2 cut(s) 357, 387
MaeI CTAG 2 cut(s) 374, 647
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 422
MalI GATC 3 cut(s) 168, 435, 621
MboI GATC 3 cut(s) 166, 433, 619
MboII GAAGA 3 cut(s) 58, 617, 685
MhlI GDGCHC 2 cut(s) 290, 419
MlsI TGGCCA 2 cut(s) 518, 600
MluCI AATT 3 cut(s) 612, 633, 729
MluNI TGGCCA 2 cut(s) 518, 600
MlyI GAGTC 1 cut(s) 647
Mox20I TGGCCA 2 cut(s) 518, 600
Mph1103I ATGCAT 1 cut(s) 304
MscI TGGCCA 2 cut(s) 518, 600
MseI TTAA 3 cut(s) 179, 698, 714
MslI CAYNNNNRTG 2 cut(s) 458, 548
Msp20I TGGCCA 2 cut(s) 518, 600
MspCI CTTAAG 1 cut(s) 697
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 746
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 746
MwoI GCNNNNNNNGC 3 cut(s) 386, 545, 787
NcoI CCATGG 2 cut(s) 278, 456
NdeII GATC 3 cut(s) 166, 433, 619
NlaIII CATG 8 cut(s) 44, 282, 302, 337, 460, 569, 605, 797
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 2 cut(s) 302, 569
OliI CACNNNNGTG 1 cut(s) 458
PaeR7I CTCGAG 1 cut(s) 101
PagI TCATGA 1 cut(s) 793
PceI AGGCCT 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 4 cut(s) 145, 372, 769, 772
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
Ppu21I YACGTR 1 cut(s) 502
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PspXI VCTCGAGB 1 cut(s) 101
PstI CTGCAG 2 cut(s) 148, 775
PsyI GACNNNGTC 1 cut(s) 110
RseI CAYNNNNRTG 2 cut(s) 458, 548
SacI GAGCTC 1 cut(s) 290
SaqAI TTAA 3 cut(s) 179, 698, 714
SatI GCNGC 4 cut(s) 144, 371, 768, 771
Sau3AI GATC 3 cut(s) 166, 433, 619
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 1 cut(s) 746
SduI GDGCHC 2 cut(s) 290, 419
SfaNI GCATC 2 cut(s) 357, 387
SfcI CTRYAG 2 cut(s) 144, 771
Sfr274I CTCGAG 1 cut(s) 101
SgrAI CRCCGGYG 1 cut(s) 419
SinI GGWCC 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 458, 548
SmlI CTYRAG 5 cut(s) 101, 412, 697, 784, 820
SmoI CTYRAG 5 cut(s) 101, 412, 697, 784, 820
Sse9I AATT 3 cut(s) 612, 633, 729
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 1 cut(s) 275
SspMI CTAG 2 cut(s) 374, 647
SstI GAGCTC 1 cut(s) 290
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 3 cut(s) 278, 456, 654
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 1 cut(s) 504
TaqI TCGA 5 cut(s) 69, 102, 246, 407, 486
TasI AATT 3 cut(s) 612, 633, 729
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 3 cut(s) 179, 698, 714
Tru9I TTAA 3 cut(s) 179, 698, 714
TscAI CASTG 4 cut(s) 245, 264, 449, 550
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 4 cut(s) 143, 370, 767, 770
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 8 cut(s) 174, 218, 228, 332, 618, 743, 782, 824
TspRI CASTG 4 cut(s) 245, 264, 449, 550
Tth111I GACNNNGTC 1 cut(s) 110
Vha464I CTTAAG 1 cut(s) 697
VpaK11BI GGWCC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 124
XapI RAATTY 1 cut(s) 729
XceI RCATGY 2 cut(s) 302, 569
XhoI CTCGAG 1 cut(s) 101
XspI CTAG 2 cut(s) 374, 647
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.