FvH4_1g25370

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004319
Physical Location & Seq
Forward (+)
17125211 .. 17125654
444 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25370.t1

Sequence Viewer

Length: 444 bp
ATGAAGCCTACGACAGTCCGCACCAGTTCTCCTGAGCACAACAGCAGTTTCGGGACATTCTACGAGGGTTGGCTTTCTGAACAAAACCAACACCTTCAGCGCCTCACCAGAATCGCCGTCGAACACAACCACAGCCAAGCTGACGATCCGGAGTTGTTACGCGTCCTGGTAGAGATAGTGTTGAAGCATTACGAGACTTACTACGAGGTAAAGTCTAGATGGGCTGAGCACAACGTACTGACCATGCTGTCTCGTCCATGGAAGAGCTCACTGGAACATGCCTTCCTTTGGATAGGCGGGTGGCGACCAAGCATGGGTTTTCATTTGCTATACGCAAAGTCCGGGCTGCAGCTGAAGGCTCAACTCACTGAGGTGATGCGAGGTTTGAGCACCTGTGATGACCTGAGTGATCTTTCGCTGAGACAGGTTGCCATTGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

148

Amino Acids

17.04

Weight (kDa)

6.44

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 40 - 112 1.2e-25 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
AccII CGCG 1 cut(s) 162
AccIII TCCGGA 1 cut(s) 148
AciI CCGC 2 cut(s) 19, 297
AclWI GGATC 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 80, 374
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 288, 314
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 1 cut(s) 165
AleI CACNNNNGTG 1 cut(s) 371
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 3 cut(s) 140, 267, 352
AluI AGCT 3 cut(s) 140, 267, 352
Alw21I GWGCWC 4 cut(s) 39, 231, 269, 392
Alw26I GTCTC 3 cut(s) 188, 255, 415
AlwI GGATC 1 cut(s) 140
Aor13HI TCCGGA 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 346, 349
AspLEI GCGC 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 97, 385
BanII GRGCYC 1 cut(s) 269
Bbv12I GWGCWC 4 cut(s) 39, 231, 269, 392
BbvI GCAGC 2 cut(s) 333, 361
BccI CCATC 1 cut(s) 213
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 3 cut(s) 188, 255, 415
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 2 cut(s) 347, 350
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 2 cut(s) 348, 351
Bme1390I CCNGG 2 cut(s) 167, 343
BmrFI CCNGG 2 cut(s) 167, 343
BmsI GCATC 1 cut(s) 366
Bpu10I CCTNAGC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 314
Bse1I ACTGG 2 cut(s) 24, 276
BseAI TCCGGA 1 cut(s) 148
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 257
BseLI CCNNNNNNNGG 2 cut(s) 288, 314
BseMII CTCAG 5 cut(s) 24, 216, 360, 395, 410
BseNI ACTGG 2 cut(s) 24, 276
BseXI GCAGC 2 cut(s) 333, 361
Bsh1236I CGCG 1 cut(s) 162
BsiHKAI GWGCWC 4 cut(s) 39, 231, 269, 392
BsiSI CCGG 2 cut(s) 149, 342
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 288, 314
BsmAI GTCTC 3 cut(s) 188, 255, 415
BsmFI GGGAC 1 cut(s) 67
Bsp1286I GDGCHC 4 cut(s) 39, 231, 269, 392
Bsp13I TCCGGA 1 cut(s) 148
Bsp143I GATC 2 cut(s) 145, 409
Bsp1720I GCTNAGC 1 cut(s) 225
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 2 cut(s) 19, 297
BspCNI CTCAG 5 cut(s) 25, 217, 361, 396, 411
BspEI TCCGGA 1 cut(s) 148
BspFNI CGCG 1 cut(s) 162
BspMAI CTGCAG 1 cut(s) 351
BspPI GGATC 1 cut(s) 140
BspQI GCTCTTC 1 cut(s) 257
BsrI ACTGG 2 cut(s) 24, 276
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 2 cut(s) 145, 409
BssT1I CCWWGG 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 257
BstDEI CTNAG 5 cut(s) 33, 225, 369, 404, 419
BstDSI CCRYGG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 2 cut(s) 148, 412
BstMAI GTCTC 3 cut(s) 188, 255, 415
BstMBI GATC 2 cut(s) 145, 409
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 165, 341
BstSFI CTRYAG 1 cut(s) 347
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 333, 361
BtgI CCRYGG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 269, 366
CfoI GCGC 1 cut(s) 102
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 236
CviAII CATG 4 cut(s) 244, 258, 278, 313
CviJI RGCY 9 cut(s) 7, 73, 135, 140, 224, 267, 346, 352, 359
CviKI_1 RGCY 9 cut(s) 7, 73, 135, 140, 224, 267, 346, 352, 359
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 5 cut(s) 33, 225, 369, 404, 419
DpnI GATC 2 cut(s) 147, 411
DpnII GATC 2 cut(s) 145, 409
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 2 cut(s) 80, 374
EcoICRI GAGCTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 4 cut(s) 247, 261, 281, 316
FaiI YATR 5 cut(s) 245, 259, 279, 314, 331
FaqI GGGAC 1 cut(s) 67
FatI CATG 4 cut(s) 243, 257, 277, 312
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 2 cut(s) 347, 350
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 347, 350
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 347, 350
HaeII RGCGCY 1 cut(s) 103
HapII CCGG 2 cut(s) 149, 342
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 102
Hin1II CATG 4 cut(s) 247, 261, 281, 316
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 1 cut(s) 111
HpaII CCGG 2 cut(s) 149, 342
HphI GGTGA 2 cut(s) 97, 385
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 4 cut(s) 32, 52, 149, 216
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 104, 292, 349
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 349
HpyF3I CTNAG 5 cut(s) 33, 225, 369, 404, 419
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 4 cut(s) 247, 261, 281, 316
HspAI GCGC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 148
Kzo9I GATC 2 cut(s) 145, 409
LguI GCTCTTC 1 cut(s) 257
Lsp1109I GCAGC 2 cut(s) 333, 361
LweI GCATC 1 cut(s) 366
MaeI CTAG 1 cut(s) 216
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 156
MalI GATC 2 cut(s) 147, 411
MboI GATC 2 cut(s) 145, 409
MboII GAAGA 1 cut(s) 274
MhlI GDGCHC 4 cut(s) 39, 231, 269, 392
MluI ACGCGT 1 cut(s) 160
MnlI CCTC 5 cut(s) 58, 113, 199, 364, 374
MroI TCCGGA 1 cut(s) 148
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 2 cut(s) 149, 342
MspR9I CCNGG 2 cut(s) 167, 343
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 162
NciI CCSGG 1 cut(s) 343
NcoI CCATGG 1 cut(s) 257
NdeII GATC 2 cut(s) 145, 409
NlaIII CATG 4 cut(s) 247, 261, 281, 316
NspI RCATGY 1 cut(s) 281
OliI CACNNNNGTG 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 348, 351
Psp124BI GAGCTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PstI CTGCAG 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 257
SatI GCNGC 2 cut(s) 347, 350
Sau3AI GATC 2 cut(s) 145, 409
ScrFI CCNGG 2 cut(s) 167, 343
SduI GDGCHC 4 cut(s) 39, 231, 269, 392
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 371
SsiI CCGC 2 cut(s) 19, 297
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 165, 341
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 120
TfiI GAWTC 1 cut(s) 111
TscAI CASTG 2 cut(s) 276, 373
TseI GCWGC 2 cut(s) 346, 349
TspDTI ATGAA 2 cut(s) 17, 311
TspRI CASTG 2 cut(s) 276, 373
XbaI TCTAGA 1 cut(s) 215
XceI RCATGY 1 cut(s) 281
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.