Prupe.4G280800_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0004319
Physical Location & Seq
Forward (+)
23773893 .. 23774726
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G280800.1

Sequence Viewer

Length: 834 bp
ATGACAGACAACATTTTTGATGAGCACGAGAGTTTCCACAATTTCTTTGAGTGCTGGCTTTCTGAACAAAACCAACATCTCCAAGACCTCATCATTGCCTCCGAAAACAACCAAACCACCAGAAACAACCTCTATAATGGTAACACCACCACTACTGCTGCAGCTAATACTAATACAAGTTTAAGAACACTGGTAGAGCGTGTGGTGAAGCATTATGAGCAATACTATGAGGCCAAGTCCAGATGGGTCAAGCAAGACGTTCTCCGGATGCTTTCGCCCTCCTGGACAACCTCCCTAGAGGATGCCTTCCTTTGGATTGGTGGGTGGCGACCAAGCATGGCTTTTCATCTCTTTTACTCCAAGTCCGGCTTGCAACTCGAGGCTCGACTCACAGAGTTGATTGAAGGTCTTGGTACAGGTGACTTGGCGGATATCTCACAGCATCAGCTCATGCAGGTGGACCATTTGCAGAGGAGGACTGTTAAGGAGGAGAGGGACATCACGGAGAAAATGGCCAAACAGCAGGAGTCGGTGGCAGACACGTCAATGGTCGAGTTGGCACACATGACTACCGAGTTGATGAGCACTAATGGTGGTCATGAGCATGAAGCTGAAGAGGACCGAGTTGAGTGTGTCGTGGCATCCAAGGAGCAATGTTTGGAGGAGATTTTGCAGAGGGCTGACAGTCTACGGCTAAAAACGCTTAAAGCCATCACACACATTCTGACTCCAATCCAGGCTGTCCATTTCTTGATTGCTGCTGCTGAGTTGCACTTGAGGCTTCATGACTGGGGCAAAAAGGAGGACGCCAGAAGCCGTGGCAATTCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

278

Amino Acids

31.84

Weight (kDa)

5.44

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 445
Acc36I ACCTGC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 688
AccIII TCCGGA 1 cut(s) 264
AciI CCGC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 513
AcuI CTGAAG 1 cut(s) 633
AcyI GRCGYC 1 cut(s) 807
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 1 cut(s) 312
AflIII ACRYGT 1 cut(s) 540
AgsI TTSAA 1 cut(s) 404
AjiI CACGTC 1 cut(s) 543
AjnI CCWGG 2 cut(s) 281, 735
AluBI AGCT 3 cut(s) 164, 448, 611
AluI AGCT 3 cut(s) 164, 448, 611
Alw21I GWGCWC 2 cut(s) 27, 587
Ama87I CYCGRG 1 cut(s) 377
Aor13HI TCCGGA 1 cut(s) 264
AoxI GGCC 2 cut(s) 231, 513
ApeKI GCWGC 4 cut(s) 158, 161, 758, 761
ArsI GACNNNNNNTTYG 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 460, 619
AsuHPI GGTGA 2 cut(s) 217, 431
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 2 cut(s) 460, 619
BalI TGGCCA 1 cut(s) 515
BauI CACGAG 1 cut(s) 26
Bbv12I GWGCWC 2 cut(s) 27, 587
BbvI GCAGC 4 cut(s) 145, 173, 745, 748
BccI CCATC 2 cut(s) 237, 719
BceAI ACGGC 2 cut(s) 707, 801
BciT130I CCWGG 2 cut(s) 283, 737
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 445
BisI GCNGC 4 cut(s) 159, 162, 759, 762
BlsI GCNGC 4 cut(s) 160, 163, 760, 763
Bme1390I CCNGG 2 cut(s) 283, 737
Bme18I GGWCC 2 cut(s) 460, 619
BmeT110I CYCGRG 1 cut(s) 377
BmgBI CACGTC 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 460, 619
BmrFI CCNGG 2 cut(s) 283, 737
BmrI ACTGGG 1 cut(s) 799
BmsI GCATC 4 cut(s) 258, 292, 451, 650
BmuI ACTGGG 1 cut(s) 799
BpuEI CTTGAG 1 cut(s) 796
BsaHI GRCGYC 1 cut(s) 807
BsaJI CCNNGG 2 cut(s) 645, 817
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse1I ACTGG 2 cut(s) 195, 794
Bse3DI GCAATG 2 cut(s) 93, 659
BseAI TCCGGA 1 cut(s) 264
BseBI CCWGG 2 cut(s) 283, 737
BseDI CCNNGG 2 cut(s) 645, 817
BseGI GGATG 3 cut(s) 273, 307, 641
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 2 cut(s) 93, 659
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 2 cut(s) 195, 794
BseRI GAGGAG 3 cut(s) 487, 503, 677
BseXI GCAGC 4 cut(s) 145, 173, 745, 748
BshFI GGCC 2 cut(s) 233, 515
BsiHKAI GWGCWC 2 cut(s) 27, 587
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 2 cut(s) 265, 366
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 2 cut(s) 233, 515
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 27, 587
Bsp13I TCCGGA 1 cut(s) 264
BspACI CCGC 1 cut(s) 428
BspANI GGCC 2 cut(s) 233, 515
BspCNI CTCAG 1 cut(s) 757
BspEI TCCGGA 1 cut(s) 264
BspHI TCATGA 2 cut(s) 598, 784
BspMAI CTGCAG 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 445
BsrDI GCAATG 2 cut(s) 93, 659
BsrI ACTGG 2 cut(s) 195, 794
BssECI CCNNGG 2 cut(s) 645, 817
BssNI GRCGYC 1 cut(s) 807
BssSI CACGAG 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 645
Bst2BI CACGAG 1 cut(s) 26
Bst2UI CCWGG 2 cut(s) 283, 737
Bst4CI ACNGT 2 cut(s) 481, 686
Bst6I CTCTTC 1 cut(s) 609
BstACI GRCGYC 1 cut(s) 807
BstC8I GCNNGC 2 cut(s) 56, 371
BstDEI CTNAG 2 cut(s) 765, 831
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 3 cut(s) 273, 307, 641
BstMWI GCNNNNNNNGC 3 cut(s) 217, 700, 778
BstNI CCWGG 2 cut(s) 283, 737
BstSCI CCNGG 2 cut(s) 281, 735
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 4 cut(s) 145, 173, 745, 748
BsuRI GGCC 2 cut(s) 233, 515
BtgI CCRYGG 1 cut(s) 817
BtrI CACGTC 1 cut(s) 543
BtsCI GGATG 3 cut(s) 273, 307, 641
BtsIMutI CAGTG 1 cut(s) 188
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 2 cut(s) 56, 371
CciI TCATGA 2 cut(s) 598, 784
Cfr13I GGNCC 2 cut(s) 460, 619
CseI GACGC 1 cut(s) 815
Csp6I GTAC 1 cut(s) 414
CviAII CATG 6 cut(s) 337, 451, 565, 599, 605, 785
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 765, 831
EaeI YGGCCR 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
EciI GGCGGA 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 645
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 460, 619
Eco57I CTGAAG 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 281, 735
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 6 cut(s) 340, 454, 568, 602, 608, 788
FaiI YATR 9 cut(s) 135, 216, 228, 338, 452, 566, 600, 606, 786
FalI AAGNNNNNCTT 4 cut(s) 325, 357, 353, 385
FaqI GGGAC 1 cut(s) 509
FatI CATG 6 cut(s) 336, 450, 564, 598, 604, 784
FblI GTMKAC 1 cut(s) 688
Fnu4HI GCNGC 4 cut(s) 159, 162, 759, 762
FokI GGATG 3 cut(s) 280, 314, 628
Fsp4HI GCNGC 4 cut(s) 159, 162, 759, 762
FspBI CTAG 1 cut(s) 296
GluI GCNGC 4 cut(s) 159, 162, 759, 762
HaeIII GGCC 2 cut(s) 233, 515
HapII CCGG 2 cut(s) 265, 366
HgaI GACGC 1 cut(s) 815
Hin1I GRCGYC 1 cut(s) 807
Hin1II CATG 6 cut(s) 340, 454, 568, 602, 608, 788
HinfI GANTC 3 cut(s) 387, 527, 727
HpaII CCGG 2 cut(s) 265, 366
HphI GGTGA 2 cut(s) 217, 431
Hpy166II GTNNAC 2 cut(s) 460, 689
Hpy188I TCNGA 3 cut(s) 64, 103, 726
Hpy188III TCNNGA 5 cut(s) 240, 265, 599, 751, 785
Hpy8I GTNNAC 2 cut(s) 460, 689
HpyAV CCTTC 2 cut(s) 316, 398
HpyCH4III ACNGT 2 cut(s) 481, 686
HpyCH4IV ACGT 2 cut(s) 258, 542
HpyCH4V TGCA 6 cut(s) 161, 373, 454, 469, 673, 772
HpyF10VI GCNNNNNNNGC 3 cut(s) 217, 700, 778
HpyF3I CTNAG 2 cut(s) 765, 831
HpySE526I ACGT 2 cut(s) 258, 542
Hsp92I GRCGYC 1 cut(s) 807
Hsp92II CATG 6 cut(s) 340, 454, 568, 602, 608, 788
Kpn2I TCCGGA 1 cut(s) 264
LmnI GCTCC 1 cut(s) 649
Lsp1109I GCAGC 4 cut(s) 145, 173, 745, 748
LweI GCATC 4 cut(s) 258, 292, 451, 650
MaeI CTAG 1 cut(s) 296
MaeII ACGT 2 cut(s) 258, 542
MaeIII GTNAC 2 cut(s) 140, 419
MboII GAAGA 1 cut(s) 626
MhlI GDGCHC 2 cut(s) 27, 587
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 2 cut(s) 40, 823
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 3 cut(s) 381, 536, 721
Mox20I TGGCCA 1 cut(s) 515
MroI TCCGGA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 515
MseI TTAA 3 cut(s) 182, 483, 705
MslI CAYNNNNRTG 3 cut(s) 455, 545, 603
Msp20I TGGCCA 1 cut(s) 515
MspI CCGG 2 cut(s) 265, 366
MspR9I CCNGG 2 cut(s) 283, 737
MvaI CCWGG 2 cut(s) 283, 737
MwoI GCNNNNNNNGC 3 cut(s) 217, 700, 778
NlaIII CATG 6 cut(s) 340, 454, 568, 602, 608, 788
NmuCI GTSAC 1 cut(s) 419
PaeR7I CTCGAG 1 cut(s) 377
PagI TCATGA 2 cut(s) 598, 784
PaqCI CACCTGC 1 cut(s) 445
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 4 cut(s) 160, 163, 760, 763
PleI GAGTC 3 cut(s) 381, 535, 721
PpsI GAGTC 3 cut(s) 381, 535, 721
Psp6I CCWGG 2 cut(s) 281, 735
PspGI CCWGG 2 cut(s) 281, 735
PspPI GGNCC 2 cut(s) 460, 619
PspXI VCTCGAGB 1 cut(s) 377
PstI CTGCAG 1 cut(s) 163
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 3 cut(s) 455, 545, 603
SaqAI TTAA 3 cut(s) 182, 483, 705
SatI GCNGC 4 cut(s) 159, 162, 759, 762
Sau96I GGNCC 2 cut(s) 460, 619
SchI GAGTC 3 cut(s) 381, 536, 721
ScrFI CCNGG 2 cut(s) 283, 737
SduI GDGCHC 2 cut(s) 27, 587
SfaNI GCATC 4 cut(s) 258, 292, 451, 650
SfcI CTRYAG 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 377
SinI GGWCC 2 cut(s) 460, 619
SlaI CTCGAG 1 cut(s) 377
SmiMI CAYNNNNRTG 3 cut(s) 455, 545, 603
SmlI CTYRAG 2 cut(s) 377, 775
SmoI CTYRAG 2 cut(s) 377, 775
Sse9I AATT 2 cut(s) 40, 823
SsiI CCGC 1 cut(s) 428
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 281, 735
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 2 cut(s) 481, 686
TaiI ACGT 2 cut(s) 261, 545
TaqI TCGA 3 cut(s) 378, 385, 552
TaqII GACCGA 1 cut(s) 636
TasI AATT 2 cut(s) 40, 823
Tru1I TTAA 3 cut(s) 182, 483, 705
Tru9I TTAA 3 cut(s) 182, 483, 705
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 4 cut(s) 158, 161, 758, 761
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 4 cut(s) 335, 621, 773, 816
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 2 cut(s) 460, 619
XhoI CTCGAG 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 688
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.