Rorug05G0120900

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004319
Physical Location & Seq
Reverse (-)
10645272 .. 10645856
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0120900.1

Sequence Viewer

Length: 489 bp
ATGGCGGGAACCAGCGGGAGTGGGAGGAGCGAGAGTGAGAAAGAGAAGACAAGGATACGGGAGAGGCAGAGAAGGGCCATCACCACTAAAATCTTCCATGGTTTACGCAAACACGGTGGCTACAAACTCCCTCCTCGCGCTGACATCAATGAGGTCCTCCGCCATCTTGCTAAAGAGGCCGGTTGGCTCGTGGAACCTGATGGCACCACCTACCGCTCTAATGTACTGAATTGCTGTCCGGCTTGTGGGATCTCCAAAGCAAGCACTGCCGCAGCAATAGCAACGCCAACACCGAGCAGCAGTGTGGTCATGGGTGGTGGTGAATGTTCGACCACAGCTTCGCCACTCCGACTCCCTGAATTTAACAGCAGTGGCAGTGGCACGCACTCCATCTGCCCATTGCCCCTCATGTCCGAAGGTGAGCTACACCACCTGCCGGAGGTCAGGGCGTCCAACCACTCCACACCTATTGCTTCACCTCACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

162

Amino Acids

17.2

Weight (kDa)

9.14

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 7 - 119 1.3e-34 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 441
Acc36I ACCTGC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 216
AccII CGCG 1 cut(s) 138
AciI CCGC 5 cut(s) 5, 15, 160, 214, 270
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 3 cut(s) 245, 436, 439
AluBI AGCT 2 cut(s) 338, 424
AluI AGCT 2 cut(s) 338, 424
AlwI GGATC 1 cut(s) 257
AoxI GGCC 2 cut(s) 75, 177
ApeKI GCWGC 2 cut(s) 272, 297
ApoI RAATTY 1 cut(s) 359
ArsI GACNNNNNNTTYG 2 cut(s) 322, 354
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 75, 154
AsuHPI GGTGA 4 cut(s) 73, 332, 431, 468
AvaII GGWCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 203
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BauI CACGAG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 284, 309
BccI CCATC 4 cut(s) 86, 171, 194, 398
BciVI GTATCC 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 441
BfuI GTATCC 1 cut(s) 48
BisI GCNGC 3 cut(s) 270, 273, 298
BlsI GCNGC 3 cut(s) 271, 274, 299
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 75, 154
BmiI GGNNCC 3 cut(s) 10, 195, 205
BpiI GAAGAC 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 336, 366
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 436, 439
Bse118I RCCGGY 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 245, 436, 439
BseMI GCAATG 1 cut(s) 398
BseRI GAGGAG 2 cut(s) 40, 123
BseXI GCAGC 2 cut(s) 284, 309
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 77, 179
BshNI GGYRCC 1 cut(s) 203
BsiSI CCGG 3 cut(s) 180, 239, 437
BslI CCNNNNNNNGG 3 cut(s) 245, 436, 439
BsnI GGCC 2 cut(s) 77, 179
Bsp143I GATC 1 cut(s) 249
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 5 cut(s) 5, 15, 160, 214, 270
BspANI GGCC 2 cut(s) 77, 179
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 10, 195, 205
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 449
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 449
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 262, 383
BstDEI CTNAG 1 cut(s) 486
BstDSI CCRYGG 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 437
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 3 cut(s) 176, 266, 278
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 284, 309
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
BsuI GTATCC 1 cut(s) 48
BsuRI GGCC 2 cut(s) 77, 179
BtgI CCRYGG 1 cut(s) 97
BtsI GCAGTG 4 cut(s) 264, 307, 376, 382
BtsIMutI CAGTG 4 cut(s) 264, 307, 376, 382
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 262, 383
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 75, 154
CseI GACGC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 224
CspCI CAANNNNNGTGG 4 cut(s) 97, 132, 451, 486
CviAII CATG 3 cut(s) 98, 310, 409
CviJI RGCY 7 cut(s) 77, 120, 179, 187, 242, 338, 424
CviKI_1 RGCY 7 cut(s) 77, 120, 179, 187, 242, 338, 424
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 486
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 3 cut(s) 101, 313, 412
FaiI YATR 3 cut(s) 99, 311, 410
FatI CATG 3 cut(s) 97, 309, 408
FauI CCCGC 1 cut(s) 8
Fnu4HI GCNGC 3 cut(s) 270, 273, 298
Fsp4HI GCNGC 3 cut(s) 270, 273, 298
GlaI GCGC 1 cut(s) 139
GluI GCNGC 3 cut(s) 270, 273, 298
HaeIII GGCC 2 cut(s) 77, 179
HapII CCGG 3 cut(s) 180, 239, 437
HgaI GACGC 1 cut(s) 438
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 3 cut(s) 101, 313, 412
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 351
HpaII CCGG 3 cut(s) 180, 239, 437
HphI GGTGA 4 cut(s) 73, 332, 431, 468
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 2 cut(s) 350, 415
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 66, 410
HpyCH4III ACNGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 266, 278
HpyF3I CTNAG 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 3 cut(s) 101, 313, 412
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 8 cut(s) 25, 193, 210, 252, 369, 430, 446, 450
Lsp1109I GCAGC 2 cut(s) 284, 309
MalI GATC 1 cut(s) 251
MbiI CCGCTC 1 cut(s) 216
MboI GATC 1 cut(s) 249
MboII GAAGA 2 cut(s) 58, 85
MflI RGATCY 1 cut(s) 249
MluCI AATT 2 cut(s) 229, 359
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 2 cut(s) 373, 477
MseI TTAA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 3 cut(s) 180, 239, 437
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 176, 266, 278
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 249
NlaIII CATG 3 cut(s) 101, 313, 412
NlaIV GGNNCC 3 cut(s) 10, 195, 205
PaqCI CACCTGC 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PkrI GCNGC 3 cut(s) 271, 274, 299
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
PpuMI RGGWCCY 1 cut(s) 154
Psp5II RGGWCCY 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 10, 195, 205
PspPI GGNCC 2 cut(s) 75, 154
PspPPI RGGWCCY 1 cut(s) 154
PsuI RGATCY 1 cut(s) 249
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 3 cut(s) 270, 273, 298
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 75, 154
SchI GAGTC 1 cut(s) 345
SinI GGWCC 1 cut(s) 154
Sse9I AATT 2 cut(s) 229, 359
SsiI CCGC 5 cut(s) 5, 15, 160, 214, 270
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 329
TasI AATT 2 cut(s) 229, 359
TatI WGTACW 1 cut(s) 223
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 4 cut(s) 271, 307, 376, 382
TseI GCWGC 2 cut(s) 272, 297
TspRI CASTG 4 cut(s) 271, 307, 376, 382
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 437
XapI RAATTY 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.