FvH4_1g25360

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004319
Physical Location & Seq
Forward (+)
17113965 .. 17115522
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25360.t1

Sequence Viewer

Length: 804 bp
ATGACTGGAGACAACATTGCTCCTGAGATGAATGGTTTTCAGGCCTTCTTCGAGAGCTGGCTTTCTGAACAAGACCAACATCTCCAGGACCTCATCATTGCCTCCAAACAGCACCAAAAAAGAGCTGCAGACGACGATGATCGGGTCTTGTTAAGTTCATTGGTAGAGAGAGTGGTGAAACATTATGAACAATACTACAACAAGAAGTCGCAATGGGCCAAGCAAGACGTGCTGCGAATGCTGTCTCCGCCATGGAGGAGCTCATTGGAAGACGCATTCCTTTGGATAGGTGGCTGGCGACCAAGCATGGCTTTTCATTTGCTCTACTCAAAGTCGGGGCTGCAGTTAGAGGCTAGTTTTGCTGAGTTGATGCGAGGGTTGAGGTTGAGCACAGGTGACTTGGGGGATCTATCACATTGCCAGCTCACCATGGTGGACAAGGTGCAAAGAAGGACTATCGAGGACGAGAAGCACCTGTCGGAAAAGATGGCCAAACTGCAAGAGACTGTGGCTGATGCTACACTTGTGGAGCTGGCGCATGAGGCCACCGAGATGATGAGGAACAATGAGGTCCATGAAGGAGGAGCTGATGATCATATGGAGCGAGTTGAGTCGACTCTAGCTTCCAAGGAGGAAGGTTTGGAGAAAATTTTGCACAAGGCTGATGATTTAAGGATGAAAACACTCAGGAACATCACACAAATTCTGAGTCCACTCCAGGCTGTTCATTTCTTGATTGCTGCTGCAGAGTTGCACTTGAGGGTTCATGATTGGGGCAAAAAGAAAGACGCCTTAAGCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

268

Amino Acids

30.64

Weight (kDa)

5.77

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 31 - 110 6e-30 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 614
AciI CCGC 1 cut(s) 248
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 2 cut(s) 648, 702
AcyI GRCGYC 1 cut(s) 789
AflII CTTAAG 1 cut(s) 793
AjiI CACGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 84, 717
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 7 cut(s) 57, 125, 261, 424, 532, 587, 623
AluI AGCT 7 cut(s) 57, 125, 261, 424, 532, 587, 623
Alw21I GWGCWC 2 cut(s) 263, 392
Alw26I GTCTC 3 cut(s) 3, 249, 497
AlwI GGATC 1 cut(s) 414
AoxI GGCC 4 cut(s) 42, 216, 489, 543
ApeKI GCWGC 5 cut(s) 125, 232, 340, 740, 743
ApoI RAATTY 2 cut(s) 648, 702
ArsI GACNNNNNNTTYG 2 cut(s) 694, 726
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 3 cut(s) 88, 216, 571
AsuHPI GGTGA 3 cut(s) 187, 407, 418
AvaII GGWCC 2 cut(s) 88, 571
BalI TGGCCA 1 cut(s) 491
BanII GRGCYC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 2 cut(s) 263, 392
BbvI GCAGC 5 cut(s) 112, 219, 327, 727, 730
BccI CCATC 1 cut(s) 481
BciT130I CCWGG 2 cut(s) 86, 719
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 3 cut(s) 3, 249, 497
BfaI CTAG 2 cut(s) 354, 620
BfmI CTRYAG 3 cut(s) 126, 341, 744
BfrI CTTAAG 1 cut(s) 793
BisI GCNGC 5 cut(s) 126, 233, 341, 741, 744
BlsI GCNGC 5 cut(s) 127, 234, 342, 742, 745
Bme1390I CCNGG 2 cut(s) 86, 719
Bme18I GGWCC 2 cut(s) 88, 571
BmgBI CACGTC 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 88, 216, 571
BmrFI CCNGG 2 cut(s) 86, 719
BmsI GCATC 2 cut(s) 360, 505
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 3 cut(s) 27, 68, 701
BpuEI CTTGAG 1 cut(s) 778
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 3 cut(s) 251, 429, 627
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 4 cut(s) 15, 96, 218, 415
BseBI CCWGG 2 cut(s) 86, 719
BseDI CCNNGG 3 cut(s) 251, 429, 627
BseGI GGATG 1 cut(s) 681
BseMI GCAATG 4 cut(s) 15, 96, 218, 415
BseMII CTCAG 4 cut(s) 15, 354, 698, 700
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 271, 597
BseXI GCAGC 5 cut(s) 112, 219, 327, 727, 730
BshFI GGCC 4 cut(s) 44, 218, 491, 545
BsiHKAI GWGCWC 2 cut(s) 263, 392
BsmAI GTCTC 3 cut(s) 3, 249, 497
BsmI GAATGC 2 cut(s) 243, 275
BsnI GGCC 4 cut(s) 44, 218, 491, 545
Bsp1286I GDGCHC 2 cut(s) 263, 392
Bsp143I GATC 3 cut(s) 139, 406, 592
Bsp19I CCATGG 2 cut(s) 251, 429
BspACI CCGC 1 cut(s) 248
BspANI GGCC 4 cut(s) 44, 218, 491, 545
BspCNI CTCAG 4 cut(s) 16, 355, 699, 699
BspHI TCATGA 1 cut(s) 766
BspMAI CTGCAG 3 cut(s) 130, 345, 748
BspPI GGATC 1 cut(s) 414
BspTI CTTAAG 1 cut(s) 793
BsrDI GCAATG 4 cut(s) 15, 96, 218, 415
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 3 cut(s) 251, 429, 627
BssMI GATC 3 cut(s) 139, 406, 592
BssNI GRCGYC 1 cut(s) 789
BssT1I CCWWGG 3 cut(s) 251, 429, 627
Bst2UI CCWGG 2 cut(s) 86, 719
Bst4CI ACNGT 1 cut(s) 508
BstACI GRCGYC 1 cut(s) 789
BstAFI CTTAAG 1 cut(s) 793
BstAPI GCANNNNNTGC 1 cut(s) 229
BstC8I GCNNGC 4 cut(s) 59, 296, 422, 534
BstDEI CTNAG 4 cut(s) 24, 363, 686, 707
BstDSI CCRYGG 2 cut(s) 251, 429
BstF5I GGATG 1 cut(s) 681
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 3 cut(s) 142, 409, 595
BstMAI GTCTC 3 cut(s) 3, 249, 497
BstMBI GATC 3 cut(s) 139, 406, 592
BstMWI GCNNNNNNNGC 5 cut(s) 229, 238, 247, 359, 542
BstNI CCWGG 2 cut(s) 86, 719
BstSCI CCNGG 2 cut(s) 84, 717
BstSFI CTRYAG 3 cut(s) 126, 341, 744
BstV1I GCAGC 5 cut(s) 112, 219, 327, 727, 730
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 4 cut(s) 44, 218, 491, 545
BtgI CCRYGG 2 cut(s) 251, 429
BtrI CACGTC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 681
Cac8I GCNNGC 4 cut(s) 59, 296, 422, 534
CciI TCATGA 1 cut(s) 766
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 3 cut(s) 88, 216, 571
CseI GACGC 2 cut(s) 281, 797
CviAII CATG 6 cut(s) 252, 307, 430, 539, 575, 767
DdeI CTNAG 4 cut(s) 24, 363, 686, 707
DpnI GATC 3 cut(s) 141, 408, 594
DpnII GATC 3 cut(s) 139, 406, 592
EaeI YGGCCR 1 cut(s) 489
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 3 cut(s) 251, 429, 627
Eco147I AGGCCT 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 263
Eco47I GGWCC 2 cut(s) 88, 571
Eco53kI GAGCTC 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 84, 717
EcoT14I CCWWGG 3 cut(s) 251, 429, 627
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 3 cut(s) 251, 429, 627
FaeI CATG 6 cut(s) 255, 310, 433, 542, 578, 770
FaiI YATR 9 cut(s) 186, 253, 308, 431, 540, 576, 597, 599, 768
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FatI CATG 6 cut(s) 251, 306, 429, 538, 574, 766
FauNDI CATATG 1 cut(s) 597
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 5 cut(s) 126, 233, 341, 741, 744
FokI GGATG 1 cut(s) 688
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 5 cut(s) 126, 233, 341, 741, 744
FspBI CTAG 2 cut(s) 354, 620
GlaI GCGC 1 cut(s) 537
GluI GCNGC 5 cut(s) 126, 233, 341, 741, 744
GsuI CTGGAG 3 cut(s) 27, 68, 701
HaeIII GGCC 4 cut(s) 44, 218, 491, 545
HgaI GACGC 2 cut(s) 281, 797
HhaI GCGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 6 cut(s) 255, 310, 433, 542, 578, 770
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HinfI GANTC 3 cut(s) 611, 616, 709
HphI GGTGA 3 cut(s) 187, 407, 418
Hpy166II GTNNAC 3 cut(s) 436, 615, 713
Hpy188I TCNGA 3 cut(s) 67, 481, 708
Hpy188III TCNNGA 5 cut(s) 23, 52, 688, 733, 767
Hpy8I GTNNAC 3 cut(s) 436, 615, 713
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 4 cut(s) 55, 444, 572, 629
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 7 cut(s) 128, 343, 445, 499, 655, 746, 754
HpyF10VI GCNNNNNNNGC 5 cut(s) 229, 238, 247, 359, 542
HpyF3I CTNAG 4 cut(s) 24, 363, 686, 707
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 6 cut(s) 255, 310, 433, 542, 578, 770
HspAI GCGC 1 cut(s) 536
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 3 cut(s) 139, 406, 592
LmnI GCTCC 5 cut(s) 25, 258, 529, 584, 601
Lsp1109I GCAGC 5 cut(s) 112, 219, 327, 727, 730
LweI GCATC 2 cut(s) 360, 505
MaeI CTAG 2 cut(s) 354, 620
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 395
MalI GATC 3 cut(s) 141, 408, 594
MboI GATC 3 cut(s) 139, 406, 592
MboII GAAGA 2 cut(s) 40, 281
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 263, 392
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 2 cut(s) 648, 702
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 3 cut(s) 610, 620, 718
MmeI TCCRAC 1 cut(s) 459
Mox20I TGGCCA 1 cut(s) 491
MscI TGGCCA 1 cut(s) 491
MseI TTAA 3 cut(s) 152, 671, 794
MslI CAYNNNNRTG 2 cut(s) 431, 551
Msp20I TGGCCA 1 cut(s) 491
MspCI CTTAAG 1 cut(s) 793
MspR9I CCNGG 2 cut(s) 86, 719
Mva1269I GAATGC 2 cut(s) 243, 275
MvaI CCWGG 2 cut(s) 86, 719
MwoI GCNNNNNNNGC 5 cut(s) 229, 238, 247, 359, 542
NcoI CCATGG 2 cut(s) 251, 429
NdeI CATATG 1 cut(s) 597
NdeII GATC 3 cut(s) 139, 406, 592
NlaIII CATG 6 cut(s) 255, 310, 433, 542, 578, 770
NmuCI GTSAC 1 cut(s) 395
OliI CACNNNNGTG 1 cut(s) 431
PagI TCATGA 1 cut(s) 766
PceI AGGCCT 1 cut(s) 44
PctI GAATGC 2 cut(s) 243, 275
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 5 cut(s) 127, 234, 342, 742, 745
PleI GAGTC 3 cut(s) 610, 619, 717
PpsI GAGTC 3 cut(s) 610, 619, 717
PpuMI RGGWCCY 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 84, 717
PspGI CCWGG 2 cut(s) 84, 717
PspPI GGNCC 3 cut(s) 88, 216, 571
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 3 cut(s) 130, 345, 748
PsuI RGATCY 1 cut(s) 406
RseI CAYNNNNRTG 2 cut(s) 431, 551
SacI GAGCTC 1 cut(s) 263
SalI GTCGAC 1 cut(s) 613
SaqAI TTAA 3 cut(s) 152, 671, 794
SatI GCNGC 5 cut(s) 126, 233, 341, 741, 744
Sau3AI GATC 3 cut(s) 139, 406, 592
Sau96I GGNCC 3 cut(s) 88, 216, 571
SchI GAGTC 3 cut(s) 610, 620, 718
ScrFI CCNGG 2 cut(s) 86, 719
SduI GDGCHC 2 cut(s) 263, 392
SfaNI GCATC 2 cut(s) 360, 505
SfcI CTRYAG 3 cut(s) 126, 341, 744
SinI GGWCC 2 cut(s) 88, 571
SmiMI CAYNNNNRTG 2 cut(s) 431, 551
SmlI CTYRAG 2 cut(s) 757, 793
SmoI CTYRAG 2 cut(s) 757, 793
Sse9I AATT 2 cut(s) 648, 702
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 1 cut(s) 248
SspMI CTAG 2 cut(s) 354, 620
SstI GAGCTC 1 cut(s) 263
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 84, 717
StyI CCWWGG 3 cut(s) 251, 429, 627
TaaI ACNGT 1 cut(s) 508
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 51, 459, 614
TasI AATT 2 cut(s) 648, 702
Tru1I TTAA 3 cut(s) 152, 671, 794
Tru9I TTAA 3 cut(s) 152, 671, 794
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 5 cut(s) 125, 232, 340, 740, 743
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 8 cut(s) 44, 147, 201, 305, 591, 692, 716, 755
Vha464I CTTAAG 1 cut(s) 793
VpaK11BI GGWCC 2 cut(s) 88, 571
XapI RAATTY 2 cut(s) 648, 702
XmiI GTMKAC 1 cut(s) 614
XspI CTAG 2 cut(s) 354, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.