Rorug02G0245100

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004319
Physical Location & Seq
Forward (+)
25488197 .. 25488586
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0245100.1

Sequence Viewer

Length: 390 bp
ATGGTAGAGATCCTTGAAGAAGTTGATCCTCGAAGCTTGGAAGATGAAGAAGCTGAAGATATCAGCTACGAGGATCTCAAGAAGCGAATGTGGAAGGATCGTGTGCGCTTAGAGAAGCTCAAGGAAATCCGAAAGAGCGAAGAACCCGAGTCTTTGGCTAAAGAAGAGGCGTCTCGCCGAAAGAAGATGGCCAGAGCTCAAGATTCCATACTCAAATACATGGTGAAGATCATGGAAGTTTTCCAAGCACGAGGCTTCGTCTATGGGATCGTTCCGAAGAAGGGGAAGCCGGTGACAGGATCGTCGGATAGCTTACGAGAGTGGTGGAAAGACAAAGTCCGGTTCGACCAGAACGCTCCACTTGCAATTTCCAAGTATATATCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

129

Amino Acids

15.21

Weight (kDa)

8.71

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EIN3_DNA-bd PF04873 24 - 126 1.6e-45 Ethylene insensitive 3, DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 301
AclWI GGATC 6 cut(s) 4, 20, 81, 105, 275, 307
AcoI YGGCCR 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 281, 296
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 6 cut(s) 36, 53, 66, 118, 197, 312
AluI AGCT 6 cut(s) 36, 53, 66, 118, 197, 312
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 6 cut(s) 4, 20, 81, 105, 275, 307
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 235, 304
AvaI CYCGRG 1 cut(s) 146
BalI TGGCCA 1 cut(s) 191
BanII GRGCYC 1 cut(s) 199
BauI CACGAG 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 199
BccI CCATC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 146
BpuEI CTTGAG 3 cut(s) 62, 104, 183
BsaHI GRCGYC 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 339
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 296
Bse118I RCCGGY 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 281, 296
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 2 cut(s) 290, 340
BslI CCNNNNNNNGG 2 cut(s) 281, 296
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsnI GGCC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 7 cut(s) 9, 25, 73, 97, 228, 267, 299
BspANI GGCC 1 cut(s) 191
BspPI GGATC 6 cut(s) 4, 20, 81, 105, 275, 307
BsrFI RCCGGY 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 289
BssMI GATC 7 cut(s) 9, 25, 73, 97, 228, 267, 299
BssNI GRCGYC 1 cut(s) 170
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 7 cut(s) 12, 28, 76, 100, 231, 270, 302
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 7 cut(s) 9, 25, 73, 97, 228, 267, 299
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstX2I RGATCY 2 cut(s) 9, 73
BstYI RGATCY 2 cut(s) 9, 73
BsuRI GGCC 1 cut(s) 191
CfoI GCGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 289
CseI GACGC 1 cut(s) 159
CviAII CATG 2 cut(s) 220, 232
DdeI CTNAG 1 cut(s) 109
DpnI GATC 7 cut(s) 11, 27, 75, 99, 230, 269, 301
DpnII GATC 7 cut(s) 9, 25, 73, 97, 228, 267, 299
DrdI GACNNNNNNGTC 1 cut(s) 301
DseDI GACNNNNNNGTC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 199
Eco32I GATATC 1 cut(s) 61
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 197
EcoRV GATATC 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 2 cut(s) 223, 235
FaiI YATR 6 cut(s) 209, 221, 233, 264, 378, 380
FatI CATG 2 cut(s) 219, 231
FriOI GRGCYC 1 cut(s) 199
GlaI GCGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 191
HapII CCGG 2 cut(s) 290, 340
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 2 cut(s) 223, 235
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 2 cut(s) 149, 203
HpaII CCGG 2 cut(s) 290, 340
HphI GGTGA 2 cut(s) 235, 304
Hpy188I TCNGA 3 cut(s) 131, 276, 307
Hpy188III TCNNGA 2 cut(s) 79, 200
Hpy99I CGWCG 1 cut(s) 307
HpyAV CCTTC 2 cut(s) 88, 274
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 2 cut(s) 223, 235
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 7 cut(s) 9, 25, 73, 97, 228, 267, 299
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 5 cut(s) 205, 282, 303, 353, 362
MaeIII GTNAC 1 cut(s) 292
MalI GATC 7 cut(s) 11, 27, 75, 99, 230, 269, 301
MboI GATC 7 cut(s) 9, 25, 73, 97, 228, 267, 299
MboII GAAGA 9 cut(s) 29, 53, 59, 68, 152, 176, 196, 238, 289
MflI RGATCY 2 cut(s) 9, 73
MhlI GDGCHC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 1 cut(s) 366
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 4 cut(s) 39, 64, 160, 245
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 191
MspI CCGG 2 cut(s) 290, 340
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 7 cut(s) 9, 25, 73, 97, 228, 267, 299
NlaIII CATG 2 cut(s) 223, 235
NmuCI GTSAC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 203
PflFI GACNNNGTC 1 cut(s) 335
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 199
PsuI RGATCY 2 cut(s) 9, 73
PsyI GACNNNGTC 1 cut(s) 335
SacI GAGCTC 1 cut(s) 199
Sau3AI GATC 7 cut(s) 9, 25, 73, 97, 228, 267, 299
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 199
SetI ASST 7 cut(s) 38, 55, 68, 120, 199, 314, 389
SmlI CTYRAG 3 cut(s) 77, 119, 198
SmoI CTYRAG 3 cut(s) 77, 119, 198
Sse9I AATT 1 cut(s) 366
SstI GAGCTC 1 cut(s) 199
TaqI TCGA 2 cut(s) 31, 345
TasI AATT 1 cut(s) 366
TfiI GAWTC 1 cut(s) 203
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 60
Tth111I GACNNNGTC 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.