Rroxscaffold_2G00120730

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004319
Physical Location & Seq
Reverse (-)
53080845 .. 53081657
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120730.1

Sequence Viewer

Length: 813 bp
ATGGCTGGAGACAGCCTTGCTCCTGAGCCTGAGCCTGAGCATGAGAAGGAGGGTTTTCAGGCCTTCTTCGAGTGCTGGCTTTCTGAACAAAACCAAGACCTCGAGGACCTCGTCGTTGCCTCCAAAAGGCACCAAAATTGTGATGATGATCAGGTGTTGTTAAGTTCATTGGTAGAGGGAGTGATGAAACATTATGAATGTTACTACAATGCAAAGTCGCAGTGGACCAAGCAAGACGCACTGGAAATGTTGTCCCCGCCATGGACGAGCTCATTGGAAGATGCATTCCTTTGGTTAGGTGGCTGGCGACCAAGCATGGCTTTTCATTTGCTCTACTCAAAGTCTGGGATGCAGCTAGAGGCTTGTTTTGCTGAGTTGATGCGAGGGTCGAGCTTGAGCACCGGTGACTTGGGTGATCTCTCACAGTGCCAGCTCACCATGGTGGACAAGTTGCAAAGGAGGACTATCCAGGAGGAGAAGCACGTATCGGAAAAGATGGCCAAACTTCAGGAGACTGTGGCTGACACTACAATGGTTGAGCTGTCGCATGTGGTCTCCGAGATGATGAGGAACAATAATGGCCATGAAGAAGGAATTGAAGATCATGCGAAGCGAGTTGAGTCCACTCTAGCTTCCAAGGAGGAAGGTTTGGGGAAGATTTTGCACAAGGCTGATGACTTGAGATTGAGAACACTTCATAACATCACACAAATTCTGAGTCCAATCCAGGCCGTTCATTTCTTGATTGCTGCTGCAGAGTTGCACTTGAGGCTTCATGACTGGGGCAAAATGAAAGACGCCTCAAGATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

270

Amino Acids

30.73

Weight (kDa)

5.16

Isoelectric Point (pI)

58.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 35 - 113 1.9e-28 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 129
AciI CCGC 1 cut(s) 257
AcoI YGGCCR 2 cut(s) 498, 580
AcsI RAATTY 1 cut(s) 711
AcuI CTGAAG 1 cut(s) 491
AcyI GRCGYC 1 cut(s) 798
AfiI CCNNNNNNNGG 2 cut(s) 126, 261
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 1 cut(s) 599
AjnI CCWGG 2 cut(s) 468, 726
AleI CACNNNNGTG 1 cut(s) 440
AluBI AGCT 6 cut(s) 270, 355, 393, 433, 541, 632
AluI AGCT 6 cut(s) 270, 355, 393, 433, 541, 632
Alw21I GWGCWC 2 cut(s) 272, 401
Alw26I GTCTC 3 cut(s) 3, 506, 559
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 4 cut(s) 60, 498, 580, 729
ApeKI GCWGC 3 cut(s) 352, 749, 752
ApoI RAATTY 1 cut(s) 711
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
AsiGI ACCGGT 1 cut(s) 401
AspS9I GGNCC 2 cut(s) 106, 225
AsuHPI GGTGA 3 cut(s) 416, 425, 427
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 2 cut(s) 106, 225
BalI TGGCCA 2 cut(s) 500, 582
BanI GGYRCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 272
Bbv12I GWGCWC 2 cut(s) 272, 401
BbvI GCAGC 3 cut(s) 364, 736, 739
BccI CCATC 1 cut(s) 490
BceAI ACGGC 1 cut(s) 716
BciT130I CCWGG 2 cut(s) 470, 728
BclI TGATCA 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 3, 506, 559
BfaI CTAG 2 cut(s) 356, 629
BfmI CTRYAG 1 cut(s) 753
BisI GCNGC 3 cut(s) 353, 750, 753
BlsI GCNGC 3 cut(s) 354, 751, 754
Bme1390I CCNGG 2 cut(s) 470, 728
Bme18I GGWCC 2 cut(s) 106, 225
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 106, 225
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 470, 728
BmrI ACTGGG 1 cut(s) 790
BmsI GCATC 3 cut(s) 271, 339, 369
BmuI ACTGGG 1 cut(s) 790
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 3 cut(s) 24, 30, 36
BpuEI CTTGAG 4 cut(s) 415, 700, 787, 787
BsaAI YACGTR 1 cut(s) 484
BsaBI GATNNNNATC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 798
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 3 cut(s) 260, 438, 636
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 261
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 2 cut(s) 246, 785
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 2 cut(s) 470, 728
BseDI CCNNGG 3 cut(s) 260, 438, 636
BseGI GGATG 1 cut(s) 354
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 126, 261
BseMII CTCAG 5 cut(s) 15, 21, 27, 363, 707
BseNI ACTGG 2 cut(s) 246, 785
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 3 cut(s) 364, 736, 739
BshFI GGCC 4 cut(s) 62, 500, 582, 731
BshNI GGYRCC 1 cut(s) 129
BshTI ACCGGT 1 cut(s) 401
BsiHKAI GWGCWC 2 cut(s) 272, 401
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 126, 261
BsmAI GTCTC 3 cut(s) 3, 506, 559
BsmFI GGGAC 1 cut(s) 238
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 4 cut(s) 62, 500, 582, 731
Bso31I GGTCTC 1 cut(s) 559
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 272, 401
Bsp143I GATC 3 cut(s) 148, 415, 601
Bsp19I CCATGG 2 cut(s) 260, 438
BspACI CCGC 1 cut(s) 257
BspANI GGCC 4 cut(s) 62, 500, 582, 731
BspCNI CTCAG 5 cut(s) 16, 22, 28, 364, 708
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 1 cut(s) 131
BspMAI CTGCAG 1 cut(s) 757
BspT107I GGYRCC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 559
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 2 cut(s) 246, 785
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 3 cut(s) 260, 438, 636
BssMI GATC 3 cut(s) 148, 415, 601
BssNI GRCGYC 1 cut(s) 798
BssT1I CCWWGG 3 cut(s) 260, 438, 636
Bst2UI CCWGG 2 cut(s) 470, 728
Bst4CI ACNGT 2 cut(s) 426, 517
BstACI GRCGYC 1 cut(s) 798
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 3 cut(s) 77, 305, 431
BstDEI CTNAG 5 cut(s) 24, 30, 36, 372, 716
BstDSI CCRYGG 2 cut(s) 260, 438
BstENI CCTNNNNNAGG 1 cut(s) 124
BstF5I GGATG 1 cut(s) 354
BstKTI GATC 3 cut(s) 151, 418, 604
BstMAI GTCTC 3 cut(s) 3, 506, 559
BstMBI GATC 3 cut(s) 148, 415, 601
BstMWI GCNNNNNNNGC 2 cut(s) 368, 769
BstNI CCWGG 2 cut(s) 470, 728
BstNSI RCATGY 1 cut(s) 551
BstSCI CCNGG 2 cut(s) 468, 726
BstSFI CTRYAG 1 cut(s) 753
BstV1I GCAGC 3 cut(s) 364, 736, 739
BsuRI GGCC 4 cut(s) 62, 500, 582, 731
BtgI CCRYGG 2 cut(s) 260, 438
BtsCI GGATG 1 cut(s) 354
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 3 cut(s) 227, 239, 431
Cac8I GCNNGC 3 cut(s) 77, 305, 431
CciI TCATGA 1 cut(s) 775
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 106, 225
CseI GACGC 2 cut(s) 245, 806
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 8 cut(s) 41, 261, 316, 439, 548, 584, 605, 776
DdeI CTNAG 5 cut(s) 24, 30, 36, 372, 716
DpnI GATC 3 cut(s) 150, 417, 603
DpnII GATC 3 cut(s) 148, 415, 601
EaeI YGGCCR 2 cut(s) 498, 580
Ecl136II GAGCTC 1 cut(s) 270
Eco130I CCWWGG 3 cut(s) 260, 438, 636
Eco147I AGGCCT 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 559
Eco47I GGWCC 2 cut(s) 106, 225
Eco53kI GAGCTC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 468, 726
EcoT14I CCWWGG 3 cut(s) 260, 438, 636
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 3 cut(s) 260, 438, 636
FaeI CATG 8 cut(s) 44, 264, 319, 442, 551, 587, 608, 779
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FaqI GGGAC 1 cut(s) 238
FatI CATG 8 cut(s) 40, 260, 315, 438, 547, 583, 604, 775
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 353, 750, 753
FokI GGATG 1 cut(s) 361
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 353, 750, 753
FspBI CTAG 2 cut(s) 356, 629
GluI GCNGC 3 cut(s) 353, 750, 753
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 4 cut(s) 62, 500, 582, 731
HapII CCGG 1 cut(s) 402
HgaI GACGC 2 cut(s) 245, 806
Hin1I GRCGYC 1 cut(s) 798
Hin1II CATG 8 cut(s) 44, 264, 319, 442, 551, 587, 608, 779
HinfI GANTC 2 cut(s) 620, 718
HpaII CCGG 1 cut(s) 402
HphI GGTGA 3 cut(s) 416, 425, 427
Hpy166II GTNNAC 3 cut(s) 225, 445, 624
Hpy188I TCNGA 4 cut(s) 85, 490, 559, 717
Hpy188III TCNNGA 5 cut(s) 23, 509, 742, 776, 804
Hpy8I GTNNAC 3 cut(s) 225, 445, 624
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 4 cut(s) 40, 73, 584, 638
HpyCH4III ACNGT 2 cut(s) 426, 517
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 7 cut(s) 212, 284, 352, 454, 664, 755, 763
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 769
HpyF3I CTNAG 5 cut(s) 24, 30, 36, 372, 716
HpySE526I ACGT 1 cut(s) 483
Hsp92I GRCGYC 1 cut(s) 798
Hsp92II CATG 8 cut(s) 44, 264, 319, 442, 551, 587, 608, 779
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 3 cut(s) 148, 415, 601
LmnI GCTCC 1 cut(s) 25
Lsp1109I GCAGC 3 cut(s) 364, 736, 739
LweI GCATC 3 cut(s) 271, 339, 369
MaeI CTAG 2 cut(s) 356, 629
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 2 cut(s) 200, 404
MalI GATC 3 cut(s) 150, 417, 603
MboI GATC 3 cut(s) 148, 415, 601
MboII GAAGA 5 cut(s) 58, 290, 599, 611, 667
MhlI GDGCHC 2 cut(s) 272, 401
MlsI TGGCCA 2 cut(s) 500, 582
MluCI AATT 3 cut(s) 136, 594, 711
MluNI TGGCCA 2 cut(s) 500, 582
MlyI GAGTC 2 cut(s) 629, 727
Mox20I TGGCCA 2 cut(s) 500, 582
Mph1103I ATGCAT 1 cut(s) 286
MscI TGGCCA 2 cut(s) 500, 582
MseI TTAA 1 cut(s) 161
MslI CAYNNNNRTG 2 cut(s) 440, 530
Msp20I TGGCCA 2 cut(s) 500, 582
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 2 cut(s) 470, 728
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 2 cut(s) 470, 728
MwoI GCNNNNNNNGC 2 cut(s) 368, 769
NcoI CCATGG 2 cut(s) 260, 438
NdeII GATC 3 cut(s) 148, 415, 601
NlaIII CATG 8 cut(s) 44, 264, 319, 442, 551, 587, 608, 779
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 404
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 1 cut(s) 551
OliI CACNNNNGTG 1 cut(s) 440
PaeR7I CTCGAG 1 cut(s) 101
PagI TCATGA 1 cut(s) 775
PceI AGGCCT 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 284
PflFI GACNNNGTC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 468
PinAI ACCGGT 1 cut(s) 401
PkrI GCNGC 3 cut(s) 354, 751, 754
PleI GAGTC 2 cut(s) 628, 726
PpsI GAGTC 2 cut(s) 628, 726
Ppu21I YACGTR 1 cut(s) 484
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 468, 726
PspGI CCWGG 2 cut(s) 468, 726
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 2 cut(s) 106, 225
PspPPI RGGWCCY 1 cut(s) 106
PspXI VCTCGAGB 1 cut(s) 101
PstI CTGCAG 1 cut(s) 757
PsyI GACNNNGTC 1 cut(s) 110
RseI CAYNNNNRTG 2 cut(s) 440, 530
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 3 cut(s) 353, 750, 753
Sau3AI GATC 3 cut(s) 148, 415, 601
Sau96I GGNCC 2 cut(s) 106, 225
SchI GAGTC 2 cut(s) 629, 727
ScrFI CCNGG 2 cut(s) 470, 728
SduI GDGCHC 2 cut(s) 272, 401
SfaNI GCATC 3 cut(s) 271, 339, 369
SfcI CTRYAG 1 cut(s) 753
Sfr274I CTCGAG 1 cut(s) 101
SgrAI CRCCGGYG 1 cut(s) 401
SinI GGWCC 2 cut(s) 106, 225
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 440, 530
SmlI CTYRAG 5 cut(s) 101, 394, 679, 766, 802
SmoI CTYRAG 5 cut(s) 101, 394, 679, 766, 802
Sse9I AATT 3 cut(s) 136, 594, 711
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 1 cut(s) 257
SspMI CTAG 2 cut(s) 356, 629
SstI GAGCTC 1 cut(s) 272
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 468, 726
StyI CCWWGG 3 cut(s) 260, 438, 636
TaaI ACNGT 2 cut(s) 426, 517
TaiI ACGT 1 cut(s) 486
TaqI TCGA 3 cut(s) 69, 102, 389
TasI AATT 3 cut(s) 136, 594, 711
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 3 cut(s) 227, 246, 431
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 3 cut(s) 352, 749, 752
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 9 cut(s) 156, 200, 210, 314, 600, 686, 725, 764, 806
TspRI CASTG 3 cut(s) 227, 246, 431
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 106, 225
XagI CCTNNNNNAGG 1 cut(s) 124
XapI RAATTY 1 cut(s) 711
XceI RCATGY 1 cut(s) 551
XhoI CTCGAG 1 cut(s) 101
XspI CTAG 2 cut(s) 356, 629
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.