FvH4_3g18230

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004319
Physical Location & Seq
Forward (+)
11664718 .. 11665960
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18230.t1

Sequence Viewer

Length: 687 bp
ATGAACGGCTACACTAGCTTCAACGACTCGTGGTTCCAGCAGCTCCACCGCCTGGTGCAGCAGCTCTCCTCCTGTCCCAAACACCCCACCACCACCGAGCACCAGCACCACTTCCTCCATGTCATCAACAAAGTCATGTCCCACTACGCCGAGTACTACCACGTCAAGTCCCTCGCCGCCGAGCAAGACGCCCTCTCCGTATTCGTCGCCCCATGGGCCACCACCCTCGAGCGCTCCCTCCACTGGATCGGCGGTTGGCGCCCCACCACCGCCTTCCACCTCGTCTACTCCGAGGCCTCCATCCACTTTGAAGCCCACATCATCGACATCCTCCGCGGCTTTCGCACCGGCGACCTTGGCGATCTCTCCCCCGCCCAGTTCCGCAGAGTTAGCGAGCTCCAATGCGAAACTGTGAAGGAGGAGAATGCGATATCGGAGGAGTTATCGGAATGGCAAGACGGCGTGAGCGAGCTGATGGGAAGCAGTACGGATCTGGATGTGAAGACGGTTCAGCTGACTAGCGTGTTGAAGAAGGCGGATGATCTGCGGTTGAGAACGGTAAGGAAGGTGGTGGATCTGTTGACGCCGCAGCAAGCTGTGGAGTTCTTGATTGCTGCTTCCGAGTTACATTTCGGAGTTCGTGGATGGGGGCTAACTCAGGACCGTCACCGGAGCAATAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

229

Amino Acids

26.1

Weight (kDa)

6.03

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 20 - 97 3.1e-25 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 52
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 336
AclWI GGATC 3 cut(s) 254, 498, 582
AcyI GRCGYC 3 cut(s) 189, 259, 584
AfaI GTAC 2 cut(s) 155, 487
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 2 cut(s) 52, 243
AgsI TTSAA 3 cut(s) 22, 311, 529
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 7 cut(s) 18, 43, 64, 397, 472, 514, 596
AluI AGCT 7 cut(s) 18, 43, 64, 397, 472, 514, 596
Alw21I GWGCWC 2 cut(s) 102, 399
AlwI GGATC 3 cut(s) 254, 498, 582
Ama87I CYCGRG 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 2 cut(s) 216, 294
ApeKI GCWGC 5 cut(s) 40, 58, 61, 589, 614
AspLEI GCGC 2 cut(s) 234, 261
AspS9I GGNCC 2 cut(s) 216, 661
AsuHPI GGTGA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 661
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 399
BauI CACGAG 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 509
Bbv12I GWGCWC 2 cut(s) 102, 399
BbvI GCAGC 5 cut(s) 52, 70, 73, 601, 601
BccI CCATC 3 cut(s) 308, 469, 639
BceAI ACGGC 2 cut(s) 22, 475
BciT130I CCWGG 1 cut(s) 53
BfaI CTAG 2 cut(s) 15, 519
BfoI RGCGCY 2 cut(s) 235, 262
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 8 cut(s) 41, 59, 62, 177, 337, 587, 590, 615
BlsI GCNGC 8 cut(s) 42, 60, 63, 178, 338, 588, 591, 616
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 661
BmeT110I CYCGRG 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 216, 661
BmiI GGNNCC 2 cut(s) 35, 260
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 370
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 509
BsaHI GRCGYC 3 cut(s) 189, 259, 584
BsaJI CCNNGG 4 cut(s) 212, 291, 334, 355
BsaWI WCCGGW 1 cut(s) 669
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 243
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 248, 376
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 4 cut(s) 212, 291, 334, 355
BseGI GGATG 5 cut(s) 300, 327, 502, 544, 650
BseLI CCNNNNNNNGG 2 cut(s) 52, 243
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 2 cut(s) 248, 376
BseRI GAGGAG 3 cut(s) 58, 434, 452
BseXI GCAGC 5 cut(s) 52, 70, 73, 601, 601
BsgI GTGCAG 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 218, 296
BshNI GGYRCC 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 102, 399
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 2 cut(s) 348, 670
BslFI GGGAC 3 cut(s) 60, 124, 154
BslI CCNNNNNNNGG 2 cut(s) 52, 243
BsmFI GGGAC 3 cut(s) 60, 124, 154
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 2 cut(s) 218, 296
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 2 cut(s) 102, 399
Bsp143I GATC 5 cut(s) 246, 361, 490, 541, 574
Bsp19I CCATGG 1 cut(s) 212
BspANI GGCC 2 cut(s) 218, 296
BspCNI CTCAG 1 cut(s) 670
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 35, 260
BspPI GGATC 3 cut(s) 254, 498, 582
BspT107I GGYRCC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 2 cut(s) 248, 376
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 4 cut(s) 212, 291, 334, 355
BssMI GATC 5 cut(s) 246, 361, 490, 541, 574
BssNI GRCGYC 3 cut(s) 189, 259, 584
BssSI CACGAG 1 cut(s) 28
BssT1I CCWWGG 2 cut(s) 212, 355
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 4 cut(s) 412, 508, 559, 665
BstACI GRCGYC 3 cut(s) 189, 259, 584
BstC8I GCNNGC 3 cut(s) 395, 470, 594
BstDEI CTNAG 1 cut(s) 657
BstDSI CCRYGG 2 cut(s) 212, 334
BstF5I GGATG 5 cut(s) 300, 327, 502, 544, 650
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 2 cut(s) 235, 262
BstHHI GCGC 2 cut(s) 234, 261
BstKTI GATC 5 cut(s) 249, 364, 493, 544, 577
BstMBI GATC 5 cut(s) 246, 361, 490, 541, 574
BstMWI GCNNNNNNNGC 6 cut(s) 15, 215, 258, 342, 357, 390
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 5 cut(s) 52, 70, 73, 601, 601
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 2 cut(s) 490, 574
BstYI RGATCY 2 cut(s) 490, 574
BsuRI GGCC 2 cut(s) 218, 296
BtgI CCRYGG 2 cut(s) 212, 334
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 5 cut(s) 300, 327, 502, 544, 650
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 395, 470, 594
CfoI GCGC 2 cut(s) 234, 261
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 216, 661
Cfr42I CCGCGG 1 cut(s) 337
CseI GACGC 2 cut(s) 197, 592
Csp6I GTAC 2 cut(s) 154, 486
CviAII CATG 3 cut(s) 119, 136, 213
CviQI GTAC 2 cut(s) 154, 486
DdeI CTNAG 1 cut(s) 657
DinI GGCGCC 1 cut(s) 260
DpnI GATC 5 cut(s) 248, 363, 492, 543, 576
DpnII GATC 5 cut(s) 246, 361, 490, 541, 574
EciI GGCGGA 1 cut(s) 551
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 2 cut(s) 212, 355
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 661
Eco47III AGCGCT 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 397
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 51
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 212, 355
EcoT38I GRGCYC 1 cut(s) 399
EgeI GGCGCC 1 cut(s) 260
EheI GGCGCC 1 cut(s) 260
ErhI CCWWGG 2 cut(s) 212, 355
FaeI CATG 3 cut(s) 122, 139, 216
FaiI YATR 3 cut(s) 120, 137, 214
FaqI GGGAC 3 cut(s) 60, 124, 154
FatI CATG 3 cut(s) 118, 135, 212
FauI CCCGC 1 cut(s) 379
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 8 cut(s) 41, 59, 62, 177, 337, 587, 590, 615
FokI GGATG 5 cut(s) 287, 314, 509, 551, 657
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 8 cut(s) 41, 59, 62, 177, 337, 587, 590, 615
FspBI CTAG 2 cut(s) 15, 519
GlaI GCGC 2 cut(s) 233, 260
GluI GCNGC 8 cut(s) 41, 59, 62, 177, 337, 587, 590, 615
HaeII RGCGCY 2 cut(s) 235, 262
HaeIII GGCC 2 cut(s) 218, 296
HapII CCGG 2 cut(s) 348, 670
HgaI GACGC 2 cut(s) 197, 592
HhaI GCGC 2 cut(s) 234, 261
Hin1I GRCGYC 3 cut(s) 189, 259, 584
Hin1II CATG 3 cut(s) 122, 139, 216
Hin6I GCGC 2 cut(s) 232, 259
HinP1I GCGC 2 cut(s) 232, 259
HincII GTYRAC 1 cut(s) 582
HindII GTYRAC 1 cut(s) 582
HinfI GANTC 1 cut(s) 26
HpaII CCGG 2 cut(s) 348, 670
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 2 cut(s) 286, 582
Hpy188I TCNGA 5 cut(s) 292, 436, 448, 622, 635
Hpy188III TCNNGA 3 cut(s) 494, 607, 659
Hpy8I GTNNAC 2 cut(s) 286, 582
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 283, 409, 526, 559
HpyCH4III ACNGT 4 cut(s) 412, 508, 559, 665
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 215, 258, 342, 357, 390
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 3 cut(s) 189, 259, 584
Hsp92II CATG 3 cut(s) 122, 139, 216
HspAI GCGC 2 cut(s) 232, 259
KasI GGCGCC 1 cut(s) 258
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 5 cut(s) 246, 361, 490, 541, 574
LmnI GCTCC 4 cut(s) 48, 239, 402, 672
Lsp1109I GCAGC 5 cut(s) 52, 70, 73, 601, 601
MaeI CTAG 2 cut(s) 15, 519
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 624, 665
MalI GATC 5 cut(s) 248, 363, 492, 543, 576
MboI GATC 5 cut(s) 246, 361, 490, 541, 574
MboII GAAGA 2 cut(s) 514, 541
MflI RGATCY 2 cut(s) 490, 574
MhlI GDGCHC 2 cut(s) 102, 399
MluCI AATT 1 cut(s) 679
Mly113I GGCGCC 1 cut(s) 259
MlyI GAGTC 1 cut(s) 20
MspA1I CMGCKG 2 cut(s) 336, 514
MspI CCGG 2 cut(s) 348, 670
MspR9I CCNGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 6 cut(s) 15, 215, 258, 342, 357, 390
NarI GGCGCC 1 cut(s) 259
NcoI CCATGG 1 cut(s) 212
NdeII GATC 5 cut(s) 246, 361, 490, 541, 574
NlaIII CATG 3 cut(s) 122, 139, 216
NlaIV GGNNCC 2 cut(s) 35, 260
NmeAIII GCCGAG 2 cut(s) 175, 205
NmuCI GTSAC 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 227
PceI AGGCCT 1 cut(s) 296
PcsI WCGNNNNNNNCGW 3 cut(s) 195, 288, 465
PctI GAATGC 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 8 cut(s) 42, 60, 63, 178, 338, 588, 591, 616
PleI GAGTC 1 cut(s) 20
PluTI GGCGCC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 35, 260
PspPI GGNCC 2 cut(s) 216, 661
PspXI VCTCGAGB 1 cut(s) 227
PsuI RGATCY 2 cut(s) 490, 574
PvuII CAGCTG 1 cut(s) 514
RsaI GTAC 2 cut(s) 155, 487
RsaNI GTAC 2 cut(s) 154, 486
SacI GAGCTC 1 cut(s) 399
SacII CCGCGG 1 cut(s) 337
SatI GCNGC 8 cut(s) 41, 59, 62, 177, 337, 587, 590, 615
Sau3AI GATC 5 cut(s) 246, 361, 490, 541, 574
Sau96I GGNCC 2 cut(s) 216, 661
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 2 cut(s) 102, 399
SfoI GGCGCC 1 cut(s) 260
Sfr274I CTCGAG 1 cut(s) 227
Sfr303I CCGCGG 1 cut(s) 337
SgrAI CRCCGGYG 1 cut(s) 347
SgrBI CCGCGG 1 cut(s) 337
SinI GGWCC 1 cut(s) 661
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 679
SseBI AGGCCT 1 cut(s) 296
SspDI GGCGCC 1 cut(s) 258
SspMI CTAG 2 cut(s) 15, 519
SstI GAGCTC 1 cut(s) 399
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 2 cut(s) 212, 355
TaaI ACNGT 4 cut(s) 412, 508, 559, 665
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 228, 324
TasI AATT 1 cut(s) 679
TatI WGTACW 1 cut(s) 153
TauI GCSGC 3 cut(s) 179, 339, 589
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 5 cut(s) 40, 58, 61, 589, 614
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 187, 503
TspRI CASTG 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 661
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 2 cut(s) 15, 519
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.