pycom15g12430

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004319
Physical Location & Seq
Forward (+)
8498882 .. 8499748
867 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12430.1

Sequence Viewer

Length: 867 bp
ATGGCAAACACCAACATTTTAGAAGTTGAGCGAGAGAGCTTCCACAGGTTCTTTGAGTGCTGGCTTGATGAACAAAACCAGCACCTCCACGACCTCCTTACTGCCGCCAAAAATAACACCACCTCCGCCGCTACTAATCCTACAACCACTGCCGCTATTAATACTAGCAGTACAAGTTTAGGAACGCTGGTGGAGCGCGTGGTGAAGCACTACGAGCATTACTACGAGGTCAAGTCGAGATGGGTTAAGCAAGACGTCCTTGGGATGCTGTCGCCGTCTTGGCTGAGCTCCCTCGAGGACGCCTTCCTTTGGATTGGCGGCTGGAGACCAAGCATGGCTTTTCATCTCTTCCACTCAAAGTCGGGATTGCAACTCGAGGTTCGAGTCGCGGAGTTTATCAGAGGGTTTTGTAGTAGTAGTAGTAGTAGTAGTAGTAAGGGTGACTTGGCGGATTTGTCGTCACATCAGCTCACGCAAGTGGACCAGATGCAGCAGAGGACTGTTAAGGAAGAGAGGGACATCAGCGAGAAGATGGCCAAACGGCAGGAGGCCGTCGCTGACTCCTCCATGGTCGGCTTGTCCCACGTCATTACGGAGTTGATGGATGCCGGTAACGGTGGTGATGATCCGGTTGCGGAGGAGGACCCCGGAGTGGAATCCGCTCTGGCATCCAAGGAGCAAGGTTTGGAGGAGGTTCTGCATAGGGCTGATAATCTACGGCTGAGGACGCTGAAAGCTATCACTCACATTCTGACTCCAATCCAGGCCGTCCATTTCTTGATTGCCGCTGCTGAGTTGCACTTGAGGCTTCATGACTGGGGAAAAAAGAAAGACGCCACTACCCGTGCCCAATCTTCTCAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

289

Amino Acids

32.13

Weight (kDa)

5.77

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 55 - 117 2.7e-25 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AbsI CCTCGAGG 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 662
AccII CGCG 2 cut(s) 198, 389
AclWI GGATC 1 cut(s) 620
AcoI YGGCCR 1 cut(s) 534
AcyI GRCGYC 3 cut(s) 255, 300, 834
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 2 cut(s) 309, 652
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 1 cut(s) 762
AleI CACNNNNGTG 1 cut(s) 476
AluBI AGCT 4 cut(s) 39, 288, 469, 737
AluI AGCT 4 cut(s) 39, 288, 469, 737
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 620
Ama87I CYCGRG 2 cut(s) 293, 374
AoxI GGCC 3 cut(s) 534, 549, 765
ApeKI GCWGC 2 cut(s) 490, 788
AseI ATTAAT 1 cut(s) 159
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 481, 643
AsuC2I CCSGG 1 cut(s) 648
AsuHPI GGTGA 3 cut(s) 214, 452, 632
AvaI CYCGRG 2 cut(s) 293, 374
AvaII GGWCC 2 cut(s) 481, 643
BaeGI GKGCMC 1 cut(s) 850
BalI TGGCCA 1 cut(s) 536
BanII GRGCYC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 290
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 2 cut(s) 502, 775
BccI CCATC 3 cut(s) 234, 526, 595
BceAI ACGGC 5 cut(s) 259, 536, 557, 734, 752
BciT130I CCWGG 1 cut(s) 764
BcnI CCSGG 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 280
BisI GCNGC 7 cut(s) 105, 129, 153, 319, 491, 786, 789
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 7 cut(s) 106, 130, 154, 320, 492, 787, 790
Bme1390I CCNGG 2 cut(s) 648, 764
Bme18I GGWCC 2 cut(s) 481, 643
BmeT110I CYCGRG 2 cut(s) 293, 374
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 2 cut(s) 481, 643
BmiI GGNNCC 1 cut(s) 645
BmrFI CCNGG 2 cut(s) 648, 764
BmrI ACTGGG 1 cut(s) 826
BmsI GCATC 4 cut(s) 255, 477, 595, 677
BmuI ACTGGG 1 cut(s) 826
BpmI CTGGAG 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 722
Bpu1102I GCTNAGC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 823
BpuMI CCSGG 1 cut(s) 648
BsaHI GRCGYC 3 cut(s) 255, 300, 834
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 4 cut(s) 259, 567, 646, 672
BsaWI WCCGGW 1 cut(s) 628
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 652
Bse118I RCCGGY 1 cut(s) 608
Bse1I ACTGG 1 cut(s) 821
BseBI CCWGG 1 cut(s) 764
BseDI CCNNGG 4 cut(s) 259, 567, 646, 672
BseGI GGATG 3 cut(s) 270, 610, 668
BseLI CCNNNNNNNGG 2 cut(s) 309, 652
BseMII CTCAG 3 cut(s) 275, 713, 783
BseNI ACTGG 1 cut(s) 821
BseRI GAGGAG 3 cut(s) 553, 653, 704
BseSI GKGCMC 1 cut(s) 850
BseXI GCAGC 2 cut(s) 502, 775
Bsh1236I CGCG 2 cut(s) 198, 389
BshFI GGCC 3 cut(s) 536, 551, 767
BsiHKAI GWGCWC 1 cut(s) 290
BsiHKCI CYCGRG 2 cut(s) 293, 374
BsiSI CCGG 3 cut(s) 609, 629, 648
BslFI GGGAC 2 cut(s) 530, 565
BslI CCNNNNNNNGG 2 cut(s) 309, 652
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 530, 565
BsnI GGCC 3 cut(s) 536, 551, 767
Bso31I GGTCTC 1 cut(s) 319
BsoBI CYCGRG 2 cut(s) 293, 374
Bsp1286I GDGCHC 2 cut(s) 290, 850
Bsp143I GATC 1 cut(s) 625
Bsp1720I GCTNAGC 1 cut(s) 284
Bsp19I CCATGG 1 cut(s) 567
BspANI GGCC 3 cut(s) 536, 551, 767
BspCNI CTCAG 3 cut(s) 276, 714, 784
BspFNI CGCG 2 cut(s) 198, 389
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 1 cut(s) 645
BspPI GGATC 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 319
BsrBI CCGCTC 1 cut(s) 662
BsrFI RCCGGY 1 cut(s) 608
BsrI ACTGG 1 cut(s) 821
BssAI RCCGGY 1 cut(s) 608
BssECI CCNNGG 4 cut(s) 259, 567, 646, 672
BssMI GATC 1 cut(s) 625
BssNI GRCGYC 3 cut(s) 255, 300, 834
BssT1I CCWWGG 3 cut(s) 259, 567, 672
Bst2UI CCWGG 1 cut(s) 764
Bst4CI ACNGT 2 cut(s) 502, 617
Bst6I CTCTTC 2 cut(s) 353, 504
BstACI GRCGYC 3 cut(s) 255, 300, 834
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 284, 722, 792
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 3 cut(s) 270, 610, 668
BstFNI CGCG 2 cut(s) 198, 389
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 1 cut(s) 628
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 1 cut(s) 625
BstMWI GCNNNNNNNGC 5 cut(s) 193, 214, 280, 727, 805
BstNI CCWGG 1 cut(s) 764
BstSCI CCNGG 2 cut(s) 646, 762
BstSLI GKGCMC 1 cut(s) 850
BstUI CGCG 2 cut(s) 198, 389
BstV1I GCAGC 2 cut(s) 502, 775
BsuRI GGCC 3 cut(s) 536, 551, 767
BtgI CCRYGG 1 cut(s) 567
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 3 cut(s) 270, 610, 668
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 62
CciI TCATGA 1 cut(s) 811
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 608
Cfr13I GGNCC 2 cut(s) 481, 643
CseI GACGC 3 cut(s) 308, 736, 842
Csp6I GTAC 1 cut(s) 171
CviAII CATG 4 cut(s) 334, 568, 812, 864
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 3 cut(s) 284, 722, 792
DpnI GATC 1 cut(s) 627
DpnII GATC 1 cut(s) 625
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 2 cut(s) 353, 504
EarI CTCTTC 2 cut(s) 353, 504
EciI GGCGGA 2 cut(s) 115, 464
Ecl136II GAGCTC 1 cut(s) 288
Eco130I CCWWGG 3 cut(s) 259, 567, 672
Eco24I GRGCYC 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 481, 643
Eco53kI GAGCTC 1 cut(s) 288
Eco88I CYCGRG 2 cut(s) 293, 374
EcoICRI GAGCTC 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 762
EcoT14I CCWWGG 3 cut(s) 259, 567, 672
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 3 cut(s) 259, 567, 672
FaeI CATG 4 cut(s) 337, 571, 815, 867
FaiI YATR 5 cut(s) 335, 569, 702, 813, 865
FalI AAGNNNNNCTT 6 cut(s) 243, 275, 322, 354, 428, 460
FaqI GGGAC 2 cut(s) 530, 565
FatI CATG 4 cut(s) 333, 567, 811, 863
Fnu4HI GCNGC 7 cut(s) 105, 129, 153, 319, 491, 786, 789
FokI GGATG 3 cut(s) 277, 617, 655
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 7 cut(s) 105, 129, 153, 319, 491, 786, 789
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 197
GluI GCNGC 7 cut(s) 105, 129, 153, 319, 491, 786, 789
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 3 cut(s) 536, 551, 767
HapII CCGG 3 cut(s) 609, 629, 648
HgaI GACGC 3 cut(s) 308, 736, 842
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 3 cut(s) 255, 300, 834
Hin1II CATG 4 cut(s) 337, 571, 815, 867
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 4 cut(s) 384, 560, 656, 754
HpaII CCGG 3 cut(s) 609, 629, 648
HphI GGTGA 3 cut(s) 214, 452, 632
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 2 cut(s) 401, 753
Hpy188III TCNNGA 4 cut(s) 237, 363, 778, 812
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 2 cut(s) 502, 617
HpyCH4IV ACGT 2 cut(s) 255, 585
HpyCH4V TGCA 4 cut(s) 370, 490, 700, 799
HpyF10VI GCNNNNNNNGC 5 cut(s) 193, 214, 280, 727, 805
HpyF3I CTNAG 3 cut(s) 284, 722, 792
HpySE526I ACGT 2 cut(s) 255, 585
Hsp92I GRCGYC 3 cut(s) 255, 300, 834
Hsp92II CATG 4 cut(s) 337, 571, 815, 867
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 625
LmnI GCTCC 3 cut(s) 193, 293, 676
Lsp1109I GCAGC 2 cut(s) 502, 775
LweI GCATC 4 cut(s) 255, 477, 595, 677
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 255, 585
MaeIII GTNAC 3 cut(s) 440, 459, 611
MalI GATC 1 cut(s) 627
MbiI CCGCTC 1 cut(s) 662
MboI GATC 1 cut(s) 625
MboII GAAGA 4 cut(s) 340, 521, 541, 846
MhlI GDGCHC 2 cut(s) 290, 850
MlsI TGGCCA 1 cut(s) 536
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 3 cut(s) 393, 554, 748
Mox20I TGGCCA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 536
MseI TTAA 3 cut(s) 159, 246, 504
MslI CAYNNNNRTG 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 3 cut(s) 609, 629, 648
MspR9I CCNGG 2 cut(s) 648, 764
MvaI CCWGG 1 cut(s) 764
MvnI CGCG 2 cut(s) 198, 389
MwoI GCNNNNNNNGC 5 cut(s) 193, 214, 280, 727, 805
NciI CCSGG 1 cut(s) 648
NcoI CCATGG 1 cut(s) 567
NdeII GATC 1 cut(s) 625
NlaIII CATG 4 cut(s) 337, 571, 815, 867
NlaIV GGNNCC 1 cut(s) 645
NmuCI GTSAC 2 cut(s) 440, 459
OliI CACNNNNGTG 1 cut(s) 476
PaeR7I CTCGAG 2 cut(s) 293, 374
PagI TCATGA 1 cut(s) 811
PfeI GAWTC 1 cut(s) 656
PkrI GCNGC 7 cut(s) 106, 130, 154, 320, 492, 787, 790
PleI GAGTC 3 cut(s) 392, 554, 748
PpsI GAGTC 3 cut(s) 392, 554, 748
PpuMI RGGWCCY 1 cut(s) 643
PshBI ATTAAT 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 643
Psp6I CCWGG 1 cut(s) 762
PspGI CCWGG 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 645
PspPI GGNCC 2 cut(s) 481, 643
PspPPI RGGWCCY 1 cut(s) 643
PspXI VCTCGAGB 2 cut(s) 293, 374
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
RseI CAYNNNNRTG 1 cut(s) 476
SacI GAGCTC 1 cut(s) 290
SaqAI TTAA 3 cut(s) 159, 246, 504
SatI GCNGC 7 cut(s) 105, 129, 153, 319, 491, 786, 789
Sau3AI GATC 1 cut(s) 625
Sau96I GGNCC 2 cut(s) 481, 643
SchI GAGTC 3 cut(s) 393, 554, 748
ScrFI CCNGG 2 cut(s) 648, 764
SduI GDGCHC 2 cut(s) 290, 850
SfaNI GCATC 4 cut(s) 255, 477, 595, 677
Sfr274I CTCGAG 2 cut(s) 293, 374
SinI GGWCC 2 cut(s) 481, 643
SlaI CTCGAG 2 cut(s) 293, 374
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 3 cut(s) 293, 374, 802
SmoI CTYRAG 3 cut(s) 293, 374, 802
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 646, 762
StyI CCWWGG 3 cut(s) 259, 567, 672
TaaI ACNGT 2 cut(s) 502, 617
TaiI ACGT 2 cut(s) 258, 588
TaqI TCGA 4 cut(s) 236, 294, 375, 382
TatI WGTACW 1 cut(s) 170
TauI GCSGC 5 cut(s) 107, 131, 155, 321, 788
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 3 cut(s) 159, 246, 504
Tru9I TTAA 3 cut(s) 159, 246, 504
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 2 cut(s) 440, 459
TseI GCWGC 2 cut(s) 490, 788
Tsp45I GTSAC 2 cut(s) 440, 459
TspDTI ATGAA 3 cut(s) 84, 332, 800
TspGWI ACGGA 1 cut(s) 608
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 2 cut(s) 481, 643
VspI ATTAAT 1 cut(s) 159
XhoI CTCGAG 2 cut(s) 293, 374
XspI CTAG 1 cut(s) 165
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.