FvH4_1g25300

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0004319
Physical Location & Seq
Reverse (-)
17077818 .. 17079645
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25300.t1

Sequence Viewer

Length: 1020 bp
ATGAAGAACCTAACCCTGTTTTTGCTTCAGAGAGGTACACTGAATCAGAAATGTCCAATAGATTTGATCCCACCGTATATCAGATATATATGCACCTGGCCCTTTCCCCCATGTTATAACAAAAACCTCTGTCTAGGGGTTTGCTCTACATATATATATCACTCCACCATAATACATATGCATGTATATTTGCCTTTGCATGTATCAGTAGTAGTAATGACCGGAGACAACAGTGGTCGTGAGAATGATGGTTTTCAGGCCTTCTTCAAGTGCTGGATTGCTGAGCAAAACCAACACCTCGATGACCTCGTCGTTGCTTCCAAAGCTGCAGACTACAATGGTGACCATGATCAGGTGTTGTTAAGTTCCTTGGTAGAGAGAGTGTTGAAACATTATGAACAATACTACAACGCCAAGTTTCAATGGGCCAAGCAAGAGGTGCTGTCAATGCTGTCGCCGCCGTGGAGGAGCTCATTGGAAGATGCGTTCCTTTGGATAGGTGGCTGGCGACCAAGCATGGCTTTTCATTTGCTCTACTCGAAGTCCGGGCTACACCCAGAGGATTGTTCTGCTGAGTTGATGCGAGGGTTGAGGTTCAGCAATACTGGTGACTTGGGTGATCTCTCACAGTGGCAACTCACCATGGTGGACGAGTTGCAAAGGAGGACTATCCAGGAGGAGAAGCATATATCGGAAAAGATGGCCAAGCTGCAGGAGACTCTGGCTGATAATCCACTTGTTGAGCTGTCGCACTTGGCCACCGATAAGATGAGGAAGAATAATAATGTCCATGAAGAAGGAGGTGATGATCATATGGAGCGAGTTGAGTCCACTCTAGCTTCCAAGGAGGAAGGTTTGGAGAAGATTTTGCACAAGGCTGATGATTTAAGGATAACAACACTCAAGAACATCACACAAATTCTGAGTCCACTCCAGGCTGTTCATTTCTTGATTGCTGCTGCAGAGTTGAACTTGAGGGTTCATGACTGGGGCATTAAGAAAGACGATGCAACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

340

Amino Acids

38.93

Weight (kDa)

5.88

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 103 - 180 3.2e-27 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AciI CCGC 1 cut(s) 458
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 2 cut(s) 702, 756
AcsI RAATTY 1 cut(s) 918
AcuI CTGAAG 1 cut(s) 11
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 4 cut(s) 268, 388, 422, 970
AjnI CCWGG 3 cut(s) 95, 672, 933
AleI CACNNNNGTG 1 cut(s) 644
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 5 cut(s) 326, 471, 709, 745, 839
AluI AGCT 5 cut(s) 326, 471, 709, 745, 839
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 2 cut(s) 219, 710
AlwI GGATC 1 cut(s) 61
AoxI GGCC 5 cut(s) 98, 258, 426, 702, 756
ApeKI GCWGC 4 cut(s) 326, 709, 956, 959
ApoI RAATTY 1 cut(s) 918
ArsI GACNNNNNNTTYG 2 cut(s) 910, 942
AspS9I GGNCC 2 cut(s) 99, 426
AsuC2I CCSGG 1 cut(s) 547
AsuHPI GGTGA 5 cut(s) 353, 620, 629, 631, 815
BalI TGGCCA 2 cut(s) 704, 758
BanII GRGCYC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 4 cut(s) 313, 696, 943, 946
BccI CCATC 2 cut(s) 242, 694
BceAI ACGGC 1 cut(s) 445
BciT130I CCWGG 3 cut(s) 97, 674, 935
BclI TGATCA 2 cut(s) 349, 808
BcnI CCSGG 1 cut(s) 547
BcoDI GTCTC 2 cut(s) 219, 710
BfaI CTAG 2 cut(s) 134, 836
BfmI CTRYAG 3 cut(s) 327, 710, 960
BisI GCNGC 5 cut(s) 327, 458, 710, 957, 960
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 5 cut(s) 328, 459, 711, 958, 961
Bme1390I CCNGG 4 cut(s) 97, 547, 674, 935
BmgT120I GGNCC 2 cut(s) 99, 426
BmrFI CCNGG 4 cut(s) 97, 547, 674, 935
BmrI ACTGGG 1 cut(s) 997
BmsI GCATC 3 cut(s) 472, 570, 997
BmuI ACTGGG 1 cut(s) 997
BpmI CTGGAG 1 cut(s) 917
Bpu1102I GCTNAGC 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 887, 994
BpuMI CCSGG 1 cut(s) 547
BsaJI CCNNGG 4 cut(s) 369, 461, 642, 843
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 610, 992
BseBI CCWGG 3 cut(s) 97, 674, 935
BseDI CCNNGG 4 cut(s) 369, 461, 642, 843
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMII CTCAG 3 cut(s) 273, 564, 914
BseNI ACTGG 2 cut(s) 610, 992
BseRI GAGGAG 2 cut(s) 481, 692
BseXI GCAGC 4 cut(s) 313, 696, 943, 946
BshFI GGCC 5 cut(s) 100, 260, 428, 704, 758
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 2 cut(s) 222, 546
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 2 cut(s) 219, 710
BsnI GGCC 5 cut(s) 100, 260, 428, 704, 758
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 4 cut(s) 66, 349, 619, 808
Bsp1720I GCTNAGC 1 cut(s) 282
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 1 cut(s) 458
BspANI GGCC 5 cut(s) 100, 260, 428, 704, 758
BspCNI CTCAG 3 cut(s) 274, 565, 915
BspHI TCATGA 1 cut(s) 982
BspMAI CTGCAG 3 cut(s) 331, 714, 964
BspPI GGATC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 610, 992
BssECI CCNNGG 4 cut(s) 369, 461, 642, 843
BssMI GATC 4 cut(s) 66, 349, 619, 808
BssT1I CCWWGG 3 cut(s) 369, 642, 843
Bst2UI CCWGG 3 cut(s) 97, 674, 935
Bst4CI ACNGT 3 cut(s) 75, 233, 630
BstAPI GCANNNNNTGC 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 3 cut(s) 282, 573, 923
BstDSI CCRYGG 2 cut(s) 461, 642
BstEII GGTNACC 1 cut(s) 341
BstKTI GATC 4 cut(s) 69, 352, 622, 811
BstMAI GTCTC 2 cut(s) 219, 710
BstMBI GATC 4 cut(s) 66, 349, 619, 808
BstMWI GCNNNNNNNGC 4 cut(s) 323, 439, 448, 457
BstNI CCWGG 3 cut(s) 97, 674, 935
BstNSI RCATGY 2 cut(s) 185, 203
BstPI GGTNACC 1 cut(s) 341
BstSCI CCNGG 4 cut(s) 95, 545, 672, 933
BstSFI CTRYAG 3 cut(s) 327, 710, 960
BstV1I GCAGC 4 cut(s) 313, 696, 943, 946
BsuRI GGCC 5 cut(s) 100, 260, 428, 704, 758
BtgI CCRYGG 2 cut(s) 461, 642
BtsIMutI CAGTG 3 cut(s) 38, 238, 635
Cac8I GCNNGC 1 cut(s) 506
CciI TCATGA 1 cut(s) 982
Cfr13I GGNCC 2 cut(s) 99, 426
Csp6I GTAC 1 cut(s) 36
CviAII CATG 8 cut(s) 111, 182, 200, 347, 517, 643, 791, 983
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 3 cut(s) 282, 573, 923
DpnI GATC 4 cut(s) 68, 351, 621, 810
DpnII GATC 4 cut(s) 66, 349, 619, 808
EaeI YGGCCR 2 cut(s) 702, 756
Ecl136II GAGCTC 1 cut(s) 471
Eco130I CCWWGG 3 cut(s) 369, 642, 843
Eco147I AGGCCT 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 473
Eco53kI GAGCTC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 11
Eco91I GGTNACC 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 471
EcoO65I GGTNACC 1 cut(s) 341
EcoRII CCWGG 3 cut(s) 95, 672, 933
EcoT14I CCWWGG 3 cut(s) 369, 642, 843
EcoT22I ATGCAT 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 473
ErhI CCWWGG 3 cut(s) 369, 642, 843
FaeI CATG 8 cut(s) 114, 185, 203, 350, 520, 646, 794, 986
FalI AAGNNNNNCTT 2 cut(s) 505, 537
FatI CATG 8 cut(s) 110, 181, 199, 346, 516, 642, 790, 982
FauNDI CATATG 2 cut(s) 177, 813
FbaI TGATCA 2 cut(s) 349, 808
Fnu4HI GCNGC 5 cut(s) 327, 458, 710, 957, 960
FriOI GRGCYC 1 cut(s) 473
Fsp4HI GCNGC 5 cut(s) 327, 458, 710, 957, 960
FspBI CTAG 2 cut(s) 134, 836
GluI GCNGC 5 cut(s) 327, 458, 710, 957, 960
GsuI CTGGAG 1 cut(s) 917
HaeIII GGCC 5 cut(s) 100, 260, 428, 704, 758
HapII CCGG 2 cut(s) 222, 546
Hin1II CATG 8 cut(s) 114, 185, 203, 350, 520, 646, 794, 986
HinfI GANTC 4 cut(s) 43, 718, 827, 925
HpaII CCGG 2 cut(s) 222, 546
HphI GGTGA 5 cut(s) 353, 620, 629, 631, 815
Hpy166II GTNNAC 4 cut(s) 38, 649, 831, 929
Hpy188I TCNGA 5 cut(s) 30, 48, 83, 694, 924
Hpy188III TCNNGA 4 cut(s) 239, 904, 949, 983
Hpy8I GTNNAC 4 cut(s) 38, 649, 831, 929
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 271, 791, 845
HpyCH4III ACNGT 3 cut(s) 75, 233, 630
HpyCH4V TGCA 9 cut(s) 93, 181, 199, 329, 658, 712, 871, 962, 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 439, 448, 457
HpyF3I CTNAG 3 cut(s) 282, 573, 923
Hsp92II CATG 8 cut(s) 114, 185, 203, 350, 520, 646, 794, 986
Ksp22I TGATCA 2 cut(s) 349, 808
Kzo9I GATC 4 cut(s) 66, 349, 619, 808
LmnI GCTCC 2 cut(s) 468, 817
Lsp1109I GCAGC 4 cut(s) 313, 696, 943, 946
LweI GCATC 3 cut(s) 472, 570, 997
MaeI CTAG 2 cut(s) 134, 836
MaeIII GTNAC 2 cut(s) 341, 608
MalI GATC 4 cut(s) 68, 351, 621, 810
MboI GATC 4 cut(s) 66, 349, 619, 808
MboII GAAGA 6 cut(s) 16, 256, 491, 787, 806, 874
MhlI GDGCHC 1 cut(s) 473
MlsI TGGCCA 2 cut(s) 704, 758
MluCI AATT 2 cut(s) 918, 1015
MluNI TGGCCA 2 cut(s) 704, 758
MlyI GAGTC 3 cut(s) 712, 836, 934
Mox20I TGGCCA 2 cut(s) 704, 758
Mph1103I ATGCAT 1 cut(s) 183
MscI TGGCCA 2 cut(s) 704, 758
MseI TTAA 4 cut(s) 362, 887, 996, 1018
MslI CAYNNNNRTG 3 cut(s) 180, 300, 644
Msp20I TGGCCA 2 cut(s) 704, 758
MspI CCGG 2 cut(s) 222, 546
MspR9I CCNGG 4 cut(s) 97, 547, 674, 935
MvaI CCWGG 3 cut(s) 97, 674, 935
MwoI GCNNNNNNNGC 4 cut(s) 323, 439, 448, 457
NciI CCSGG 1 cut(s) 547
NcoI CCATGG 1 cut(s) 642
NdeI CATATG 2 cut(s) 177, 813
NdeII GATC 4 cut(s) 66, 349, 619, 808
NlaIII CATG 8 cut(s) 114, 185, 203, 350, 520, 646, 794, 986
NmuCI GTSAC 2 cut(s) 341, 608
NsiI ATGCAT 1 cut(s) 183
NspI RCATGY 2 cut(s) 185, 203
OliI CACNNNNGTG 1 cut(s) 644
PagI TCATGA 1 cut(s) 982
PceI AGGCCT 1 cut(s) 260
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfeI GAWTC 1 cut(s) 43
PflFI GACNNNGTC 1 cut(s) 308
PfoI TCCNGGA 1 cut(s) 672
PkrI GCNGC 5 cut(s) 328, 459, 711, 958, 961
PleI GAGTC 3 cut(s) 712, 835, 933
PpsI GAGTC 3 cut(s) 712, 835, 933
PsiI TTATAA 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 473
Psp6I CCWGG 3 cut(s) 95, 672, 933
PspEI GGTNACC 1 cut(s) 341
PspGI CCWGG 3 cut(s) 95, 672, 933
PspPI GGNCC 2 cut(s) 99, 426
PstI CTGCAG 3 cut(s) 331, 714, 964
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 3 cut(s) 180, 300, 644
SacI GAGCTC 1 cut(s) 473
SaqAI TTAA 4 cut(s) 362, 887, 996, 1018
SatI GCNGC 5 cut(s) 327, 458, 710, 957, 960
Sau3AI GATC 4 cut(s) 66, 349, 619, 808
Sau96I GGNCC 2 cut(s) 99, 426
SchI GAGTC 3 cut(s) 712, 836, 934
ScrFI CCNGG 4 cut(s) 97, 547, 674, 935
SduI GDGCHC 1 cut(s) 473
SfaNI GCATC 3 cut(s) 472, 570, 997
SfcI CTRYAG 3 cut(s) 327, 710, 960
SmiMI CAYNNNNRTG 3 cut(s) 180, 300, 644
SmlI CTYRAG 2 cut(s) 902, 973
SmoI CTYRAG 2 cut(s) 902, 973
Sse9I AATT 2 cut(s) 918, 1015
SseBI AGGCCT 1 cut(s) 260
SsiI CCGC 1 cut(s) 458
SspMI CTAG 2 cut(s) 134, 836
SstI GAGCTC 1 cut(s) 473
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 4 cut(s) 95, 545, 672, 933
StyI CCWWGG 3 cut(s) 369, 642, 843
TaaI ACNGT 3 cut(s) 75, 233, 630
TaqI TCGA 2 cut(s) 300, 539
TasI AATT 2 cut(s) 918, 1015
TauI GCSGC 1 cut(s) 460
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 4 cut(s) 362, 887, 996, 1018
Tru9I TTAA 4 cut(s) 362, 887, 996, 1018
TscAI CASTG 3 cut(s) 45, 238, 635
TseFI GTSAC 2 cut(s) 341, 608
TseI GCWGC 4 cut(s) 326, 709, 956, 959
Tsp45I GTSAC 2 cut(s) 341, 608
TspDTI ATGAA 6 cut(s) 17, 411, 515, 807, 932, 971
TspRI CASTG 3 cut(s) 45, 238, 635
Tth111I GACNNNGTC 1 cut(s) 308
XapI RAATTY 1 cut(s) 918
XceI RCATGY 2 cut(s) 185, 203
XspI CTAG 2 cut(s) 134, 836
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.