Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8225144.1

Orthogroup ID

OG0004319

Physical Location & Seq

Genomic Coordinates Forward (+)

79 .. 747

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8225144.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggctggagacagcattgctcctaagcctgagcctgagcgtgagaaggagggttttcaggccttcttcgagtgctggatttctgaacaaaaccaagacctcgaggacctcgtcgttgcctccaaaaggcaccaaaacaaagctgcagacgacaatggtgatgatgatcaggtgttgttaagttcattggtagagggagtgatgaaacattatgaatcttactacaatgcaaagtcgcagtgggtcaagcaagacgcactggtaatgttgtctccgccatggacgagctcattggaagatgcattcctttggttaggtggctggcgaccaagcatggcttttcatttgctctactcaaagtctgggatgcagctagaggcttgttttgctgagttgatgcgagggtcgagcttgagcaccggtgacttgggtgatctctcacagtgccagctcaccatggtggacaagttgcaaaggaggactatcgaggaggagaagcacgtatcggaaaagatggccaaacttcaggagactatggctgacactacaatggttgagctgtcgcatgtggtctccgagatgatgaggaacaataatggccatgaagaaggaattgatgatcaagagaagcgagttgagtccactctagcttccaaggaggaaggtttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DOG1

Protein Analysis

223

Amino Acids

25.23

Weight (kDa)

4.63

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14880 AT3G14880
fragaria_vesca	FvH4_1g25300 FvH4_1g25360 FvH4_1g25370 FvH4_3g18230
malus_domestica	MD03G1243800.v1.1 MD11G1264300.v1.1 MD15G1138000.v1.1
prunus_persica	Prupe.4G164300_v2.0.a1 Prupe.4G164300_v2.0.a1 Prupe.4G280800_v2.0.a1
pyrus_communis	pycom15g12430
rosa_chinensis	RchiOBHm_Chr2g0123401 RchiOBHm_Chr5g0030811
rosa_laevigata	RLG00000018747 RLG00000033255
rosa_multiflora	Rmu_co8225144.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049450 Rroxscaffold_2G00120730
rosa_rugosa	Rorug02G0245100 Rorug05G0120900
rosa_samantha	Rh2AG304000 Rh2BG312000 Rh2CG290500 Rh2DG328000 Rh5AG213500 Rh5BG212400 Rh5CG235700 Rh5DG217100
rosa_wichuraiana	Rw2G024330 Rw5G019520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	129
AciI	CCGC	1 cut(s)	275
AcoI	YGGCCR	2 cut(s)	516, 598
AcuI	CTGAAG	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgeI	ACCGGT	1 cut(s)	419
AleI	CACNNNNGTG	1 cut(s)	458
AluBI	AGCT	7 cut(s)	143, 288, 373, 411, 451, 559, 650
AluI	AGCT	7 cut(s)	143, 288, 373, 411, 451, 559, 650
Alw21I	GWGCWC	2 cut(s)	290, 419
Alw26I	GTCTC	4 cut(s)	3, 276, 524, 577
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	3 cut(s)	60, 516, 598
ApeKI	GCWGC	2 cut(s)	143, 370
AsiGI	ACCGGT	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	4 cut(s)	170, 434, 443, 445
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	106
BalI	TGGCCA	2 cut(s)	518, 600
BanI	GGYRCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	290, 419
BbvI	GCAGC	2 cut(s)	130, 382
BccI	CCATC	1 cut(s)	508
BclI	TGATCA	2 cut(s)	166, 619
BcoDI	GTCTC	4 cut(s)	3, 276, 524, 577
BfaI	CTAG	2 cut(s)	374, 647
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	2 cut(s)	144, 371
BlsI	GCNGC	2 cut(s)	145, 372
Bme18I	GGWCC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	131
BmsI	GCATC	3 cut(s)	289, 357, 387
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	3 cut(s)	24, 30, 36
BpuEI	CTTGAG	1 cut(s)	433
BsaAI	YACGTR	1 cut(s)	502
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	3 cut(s)	278, 456, 654
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	165
BseDI	CCNNGG	3 cut(s)	278, 456, 654
BseGI	GGATG	1 cut(s)	372
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	3 cut(s)	21, 27, 381
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	2 cut(s)	503, 506
BseXI	GCAGC	2 cut(s)	130, 382
BshFI	GGCC	3 cut(s)	62, 518, 600
BshNI	GGYRCC	1 cut(s)	129
BshTI	ACCGGT	1 cut(s)	419
BsiHKAI	GWGCWC	2 cut(s)	290, 419
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	420
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	4 cut(s)	3, 276, 524, 577
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	62, 518, 600
Bso31I	GGTCTC	1 cut(s)	577
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	290, 419
Bsp143I	GATC	3 cut(s)	166, 433, 619
Bsp19I	CCATGG	2 cut(s)	278, 456
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	3 cut(s)	62, 518, 600
BspCNI	CTCAG	3 cut(s)	22, 28, 382
BspLI	GGNNCC	1 cut(s)	131
BspMAI	CTGCAG	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	278, 456, 654
BssMI	GATC	3 cut(s)	166, 433, 619
BssT1I	CCWWGG	3 cut(s)	278, 456, 654
Bst4CI	ACNGT	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	323, 449
BstDEI	CTNAG	4 cut(s)	24, 30, 36, 390
BstDSI	CCRYGG	2 cut(s)	278, 456
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	3 cut(s)	169, 436, 622
BstMAI	GTCTC	4 cut(s)	3, 276, 524, 577
BstMBI	GATC	3 cut(s)	166, 433, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	569
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	130, 382
BsuRI	GGCC	3 cut(s)	62, 518, 600
BtgI	CCRYGG	2 cut(s)	278, 456
BtsCI	GGATG	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	3 cut(s)	245, 257, 449
Cac8I	GCNNGC	2 cut(s)	323, 449
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	263
CspAI	ACCGGT	1 cut(s)	419
CviAII	CATG	5 cut(s)	279, 334, 457, 566, 602
DdeI	CTNAG	4 cut(s)	24, 30, 36, 390
DpnI	GATC	3 cut(s)	168, 435, 621
DpnII	GATC	3 cut(s)	166, 433, 619
EaeI	YGGCCR	2 cut(s)	516, 598
EciI	GGCGGA	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	288
Eco130I	CCWWGG	3 cut(s)	278, 456, 654
Eco147I	AGGCCT	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT14I	CCWWGG	3 cut(s)	278, 456, 654
EcoT22I	ATGCAT	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	3 cut(s)	278, 456, 654
FaeI	CATG	5 cut(s)	282, 337, 460, 569, 605
FaiI	YATR	7 cut(s)	213, 280, 335, 458, 536, 567, 603
FalI	AAGNNNNNCTT	2 cut(s)	322, 354
FatI	CATG	5 cut(s)	278, 333, 456, 565, 601
FbaI	TGATCA	2 cut(s)	166, 619
Fnu4HI	GCNGC	2 cut(s)	144, 371
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	144, 371
FspBI	CTAG	2 cut(s)	374, 647
GluI	GCNGC	2 cut(s)	144, 371
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	62, 518, 600
HapII	CCGG	1 cut(s)	420
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	5 cut(s)	282, 337, 460, 569, 605
HinfI	GANTC	2 cut(s)	215, 638
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	4 cut(s)	170, 434, 443, 445
Hpy166II	GTNNAC	2 cut(s)	463, 642
Hpy188I	TCNGA	3 cut(s)	85, 508, 577
Hpy188III	TCNNGA	2 cut(s)	527, 623
Hpy8I	GTNNAC	2 cut(s)	463, 642
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	40, 73, 602, 656
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	5 cut(s)	146, 230, 302, 370, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	4 cut(s)	24, 30, 36, 390
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	5 cut(s)	282, 337, 460, 569, 605
Ksp22I	TGATCA	2 cut(s)	166, 619
Kzo9I	GATC	3 cut(s)	166, 433, 619
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	2 cut(s)	130, 382
LweI	GCATC	3 cut(s)	289, 357, 387
MaeI	CTAG	2 cut(s)	374, 647
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	3 cut(s)	168, 435, 621
MboI	GATC	3 cut(s)	166, 433, 619
MboII	GAAGA	3 cut(s)	58, 308, 617
MhlI	GDGCHC	2 cut(s)	290, 419
MlsI	TGGCCA	2 cut(s)	518, 600
MluCI	AATT	1 cut(s)	612
MluNI	TGGCCA	2 cut(s)	518, 600
MlyI	GAGTC	1 cut(s)	647
Mox20I	TGGCCA	2 cut(s)	518, 600
Mph1103I	ATGCAT	1 cut(s)	304
MscI	TGGCCA	2 cut(s)	518, 600
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	2 cut(s)	458, 548
Msp20I	TGGCCA	2 cut(s)	518, 600
MspI	CCGG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	386
NcoI	CCATGG	2 cut(s)	278, 456
NdeII	GATC	3 cut(s)	166, 433, 619
NlaIII	CATG	5 cut(s)	282, 337, 460, 569, 605
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	304
NspI	RCATGY	1 cut(s)	569
OliI	CACNNNNGTG	1 cut(s)	458
PaeR7I	CTCGAG	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	110
PinAI	ACCGGT	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	145, 372
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Ppu21I	YACGTR	1 cut(s)	502
PpuMI	RGGWCCY	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PspXI	VCTCGAGB	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	458, 548
SacI	GAGCTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	144, 371
Sau3AI	GATC	3 cut(s)	166, 433, 619
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	647
SduI	GDGCHC	2 cut(s)	290, 419
SfaNI	GCATC	3 cut(s)	289, 357, 387
SfcI	CTRYAG	1 cut(s)	144
Sfr274I	CTCGAG	1 cut(s)	101
SgrAI	CRCCGGYG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	458, 548
SmlI	CTYRAG	2 cut(s)	101, 412
SmoI	CTYRAG	2 cut(s)	101, 412
Sse9I	AATT	1 cut(s)	612
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	2 cut(s)	374, 647
SstI	GAGCTC	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	62
StyI	CCWWGG	3 cut(s)	278, 456, 654
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	4 cut(s)	69, 102, 407, 486
TasI	AATT	1 cut(s)	612
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	3 cut(s)	245, 264, 449
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	143, 370
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	5 cut(s)	174, 218, 228, 332, 618
TspRI	CASTG	3 cut(s)	245, 264, 449
Tth111I	GACNNNGTC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	106
XagI	CCTNNNNNAGG	1 cut(s)	124
XceI	RCATGY	1 cut(s)	569
XhoI	CTCGAG	1 cut(s)	101
XspI	CTAG	2 cut(s)	374, 647
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.