MD11G1264300.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004319
Physical Location & Seq
Reverse (-)
37948232 .. 37949376
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1264300.v1.1.491

Sequence Viewer

Length: 684 bp
ATGAGCAGCTTCACCAGCTTCTACGAGACGTGGTTTGAGCAGCTTCACCACCTCGTCCACCAGCTCTCCACTTGTCCCAGACCCCCCACAACTCCTGACCACCACCACCAACTCCTCCACGTCGTCCAGAAAGTCATGGCCCACTACGCCGAGTACTACCGTGTCAAGTCCCTTGCCGCGGAGCGCGACGCCCTCTCCGTCTTTGTTGCCCCCTGGGCCACCACCCTCGAGCGCTCCCTCCACTGGATCGGCGGCTGGCGCCCCACCACTGCCTTCCACCTTGTGTACTCCGAGTCCTCCATCCACTTTGAGGCTCACATCGTTGACATCCTCCGGGGCTACCGCACCGGTGACCTTGGGGACCTCACCCCCTCCCAGTTCCGCCGCGTCAGTGACCTCCAGTGCGAAACTGTGAAAGAGGAGAATGCGATATCCGATGAGTTATCGGAGTGGCAAGACGGGGCGTGTGAGCTGATGGGCGAATACACTAATCTGGAGACGAACATGGGATTGCTGGTGAGTGTGTTGAAGAAGGCTGACGAACTGCGGCTGAAGACTCTGAGAAAAGTGGTGGAACTGCTGACTCCACAGCAGGCTGTGGAGTTCTTGATTGCAGCTGCCGAGTTGCAGTTTGGTGTCCGCGGCTGGGGGTTGAATCAGGACCGTCGGCGTAGGAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

228

Amino Acids

26.16

Weight (kDa)

6.05

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 26 - 97 1.4e-26 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 258
AccII CGCG 4 cut(s) 179, 186, 387, 642
AciI CCGC 9 cut(s) 177, 179, 252, 343, 382, 385, 547, 640, 642
AclWI GGATC 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 572
AcyI GRCGYC 2 cut(s) 189, 259
AdeI CACNNNGTG 1 cut(s) 283
AfaI GTAC 2 cut(s) 155, 287
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 4 cut(s) 178, 243, 310, 646
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 2 cut(s) 529, 655
AjiI CACGTC 2 cut(s) 30, 121
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 6 cut(s) 9, 18, 43, 64, 472, 617
AluI AGCT 6 cut(s) 9, 18, 43, 64, 472, 617
Alw26I GTCTC 2 cut(s) 20, 491
AlwI GGATC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 2 cut(s) 138, 216
ApeKI GCWGC 4 cut(s) 6, 40, 614, 617
AsiGI ACCGGT 1 cut(s) 347
AspLEI GCGC 3 cut(s) 186, 234, 261
AspS9I GGNCC 4 cut(s) 139, 216, 361, 661
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 5 cut(s) 4, 38, 358, 362, 529
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 2 cut(s) 361, 661
BanI GGYRCC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 560
BbvI GCAGC 4 cut(s) 18, 52, 604, 626
BccI CCATC 2 cut(s) 308, 469
BciT130I CCWGG 1 cut(s) 214
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 2 cut(s) 20, 491
BfoI RGCGCY 2 cut(s) 235, 262
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 9 cut(s) 7, 41, 177, 253, 385, 548, 615, 618, 643
BlsI GCNGC 9 cut(s) 8, 42, 178, 254, 386, 549, 616, 619, 644
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 214, 335
Bme18I GGWCC 2 cut(s) 361, 661
BmeT110I CYCGRG 1 cut(s) 227
BmgBI CACGTC 2 cut(s) 30, 121
BmgT120I GGNCC 4 cut(s) 139, 216, 361, 661
BmiI GGNNCC 2 cut(s) 260, 362
BmrFI CCNGG 2 cut(s) 214, 335
BmrI ACTGGG 1 cut(s) 370
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 560
BpmI CTGGAG 2 cut(s) 383, 515
BpuMI CCSGG 1 cut(s) 335
BsaHI GRCGYC 2 cut(s) 189, 259
BsaJI CCNNGG 6 cut(s) 177, 212, 213, 334, 355, 640
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 179, 209
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 243, 310, 646
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 3 cut(s) 248, 376, 400
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 6 cut(s) 177, 212, 213, 334, 355, 640
BseGI GGATG 2 cut(s) 300, 327
BseLI CCNNNNNNNGG 4 cut(s) 178, 243, 310, 646
BseMII CTCAG 1 cut(s) 551
BseNI ACTGG 3 cut(s) 248, 376, 400
BseRI GAGGAG 2 cut(s) 104, 434
BseXI GCAGC 4 cut(s) 18, 52, 604, 626
BseYI CCCAGC 1 cut(s) 645
Bsh1236I CGCG 4 cut(s) 179, 186, 387, 642
BshFI GGCC 2 cut(s) 140, 218
BshNI GGYRCC 1 cut(s) 258
BshTI ACCGGT 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 2 cut(s) 334, 348
BslFI GGGAC 3 cut(s) 60, 154, 374
BslI CCNNNNNNNGG 4 cut(s) 178, 243, 310, 646
BsmAI GTCTC 2 cut(s) 20, 491
BsmBI CGTCTC 2 cut(s) 20, 491
BsmFI GGGAC 3 cut(s) 60, 154, 374
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 2 cut(s) 140, 218
BsoBI CYCGRG 1 cut(s) 227
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 9 cut(s) 177, 179, 252, 343, 382, 385, 547, 640, 642
BspANI GGCC 2 cut(s) 140, 218
BspCNI CTCAG 1 cut(s) 552
BspFNI CGCG 4 cut(s) 179, 186, 387, 642
BspLI GGNNCC 2 cut(s) 260, 362
BspPI GGATC 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 3 cut(s) 248, 376, 400
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 6 cut(s) 177, 212, 213, 334, 355, 640
BssMI GATC 1 cut(s) 246
BssNI GRCGYC 2 cut(s) 189, 259
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 3 cut(s) 161, 412, 665
BstACI GRCGYC 2 cut(s) 189, 259
BstC8I GCNNGC 2 cut(s) 257, 594
BstDEI CTNAG 1 cut(s) 560
BstDSI CCRYGG 2 cut(s) 177, 640
BstEII GGTNACC 1 cut(s) 350
BstF5I GGATG 2 cut(s) 300, 327
BstFNI CGCG 4 cut(s) 179, 186, 387, 642
BstH2I RGCGCY 2 cut(s) 235, 262
BstHHI GCGC 3 cut(s) 186, 234, 261
BstKTI GATC 1 cut(s) 249
BstMAI GTCTC 2 cut(s) 20, 491
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 4 cut(s) 15, 146, 215, 258
BstNI CCWGG 1 cut(s) 214
BstPI GGTNACC 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 212, 333
BstUI CGCG 4 cut(s) 179, 186, 387, 642
BstV1I GCAGC 4 cut(s) 18, 52, 604, 626
BstV2I GAAGAC 1 cut(s) 560
BsuRI GGCC 2 cut(s) 140, 218
BtgI CCRYGG 2 cut(s) 177, 640
BtrI CACGTC 2 cut(s) 30, 121
BtsCI GGATG 2 cut(s) 300, 327
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 4 cut(s) 241, 267, 397, 407
Cac8I GCNNGC 2 cut(s) 257, 594
CfoI GCGC 3 cut(s) 186, 234, 261
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 4 cut(s) 139, 216, 361, 661
Cfr42I CCGCGG 2 cut(s) 180, 643
CseI GACGC 2 cut(s) 197, 376
Csp6I GTAC 2 cut(s) 154, 286
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 2 cut(s) 136, 505
CviQI GTAC 2 cut(s) 154, 286
DdeI CTNAG 1 cut(s) 560
DinI GGCGCC 1 cut(s) 260
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DraIII CACNNNGTG 1 cut(s) 283
EciI GGCGGA 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 355
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 361, 661
Eco47III AGCGCT 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 361
EcoO65I GGTNACC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 212
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 355
EgeI GGCGCC 1 cut(s) 260
EheI GGCGCC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 355
Esp3I CGTCTC 2 cut(s) 20, 491
FaeI CATG 2 cut(s) 139, 508
FaiI YATR 2 cut(s) 137, 506
FaqI GGGAC 3 cut(s) 60, 154, 374
FatI CATG 2 cut(s) 135, 504
Fnu4HI GCNGC 9 cut(s) 7, 41, 177, 253, 385, 548, 615, 618, 643
FokI GGATG 2 cut(s) 287, 314
Fsp4HI GCNGC 9 cut(s) 7, 41, 177, 253, 385, 548, 615, 618, 643
GlaI GCGC 3 cut(s) 185, 233, 260
GluI GCNGC 9 cut(s) 7, 41, 177, 253, 385, 548, 615, 618, 643
GsaI CCCAGC 1 cut(s) 649
GsuI CTGGAG 2 cut(s) 383, 515
HaeII RGCGCY 2 cut(s) 235, 262
HaeIII GGCC 2 cut(s) 140, 218
HapII CCGG 2 cut(s) 334, 348
HgaI GACGC 2 cut(s) 197, 376
HhaI GCGC 3 cut(s) 186, 234, 261
Hin1I GRCGYC 2 cut(s) 189, 259
Hin1II CATG 2 cut(s) 139, 508
Hin6I GCGC 3 cut(s) 184, 232, 259
HinP1I GCGC 3 cut(s) 184, 232, 259
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 4 cut(s) 293, 556, 583, 655
HpaII CCGG 2 cut(s) 334, 348
HphI GGTGA 5 cut(s) 4, 38, 358, 362, 529
Hpy166II GTNNAC 3 cut(s) 58, 286, 325
Hpy188I TCNGA 4 cut(s) 292, 436, 448, 561
Hpy188III TCNNGA 5 cut(s) 95, 127, 494, 607, 659
Hpy8I GTNNAC 3 cut(s) 58, 286, 325
Hpy99I CGWCG 3 cut(s) 125, 191, 669
HpyAV CCTTC 2 cut(s) 283, 526
HpyCH4III ACNGT 3 cut(s) 161, 412, 665
HpyCH4IV ACGT 2 cut(s) 29, 120
HpyCH4V TGCA 2 cut(s) 614, 628
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 146, 215, 258
HpyF3I CTNAG 1 cut(s) 560
HpySE526I ACGT 2 cut(s) 29, 120
Hsp92I GRCGYC 2 cut(s) 189, 259
Hsp92II CATG 2 cut(s) 139, 508
HspAI GCGC 3 cut(s) 184, 232, 259
KasI GGCGCC 1 cut(s) 258
KspI CCGCGG 2 cut(s) 180, 643
Kzo9I GATC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 181, 239
Lsp1109I GCAGC 4 cut(s) 18, 52, 604, 626
MaeII ACGT 2 cut(s) 29, 120
MaeIII GTNAC 2 cut(s) 350, 392
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 2 cut(s) 541, 565
Mly113I GGCGCC 1 cut(s) 259
MlyI GAGTC 3 cut(s) 302, 550, 577
MspA1I CMGCKG 3 cut(s) 179, 617, 642
MspI CCGG 2 cut(s) 334, 348
MspR9I CCNGG 2 cut(s) 214, 335
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 4 cut(s) 179, 186, 387, 642
MwoI GCNNNNNNNGC 4 cut(s) 15, 146, 215, 258
NarI GGCGCC 1 cut(s) 259
NciI CCSGG 1 cut(s) 335
NdeII GATC 1 cut(s) 246
NlaIII CATG 2 cut(s) 139, 508
NlaIV GGNNCC 2 cut(s) 260, 362
NmeAIII GCCGAG 2 cut(s) 175, 646
NmuCI GTSAC 2 cut(s) 350, 392
PaeR7I CTCGAG 1 cut(s) 227
PasI CCCWGGG 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 430
PfeI GAWTC 1 cut(s) 655
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 9 cut(s) 8, 42, 178, 254, 386, 549, 616, 619, 644
PleI GAGTC 3 cut(s) 301, 550, 577
PluTI GGCGCC 1 cut(s) 262
PpsI GAGTC 3 cut(s) 301, 550, 577
PpuMI RGGWCCY 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 212
PspEI GGTNACC 1 cut(s) 350
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 2 cut(s) 260, 362
PspPI GGNCC 4 cut(s) 139, 216, 361, 661
PspPPI RGGWCCY 1 cut(s) 361
PspXI VCTCGAGB 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 2 cut(s) 155, 287
RsaNI GTAC 2 cut(s) 154, 286
SacII CCGCGG 2 cut(s) 180, 643
SatI GCNGC 9 cut(s) 7, 41, 177, 253, 385, 548, 615, 618, 643
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 4 cut(s) 139, 216, 361, 661
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 3 cut(s) 302, 550, 577
ScrFI CCNGG 2 cut(s) 214, 335
SfoI GGCGCC 1 cut(s) 260
Sfr274I CTCGAG 1 cut(s) 227
Sfr303I CCGCGG 2 cut(s) 180, 643
SgrAI CRCCGGYG 1 cut(s) 347
SgrBI CCGCGG 2 cut(s) 180, 643
SinI GGWCC 2 cut(s) 361, 661
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SsiI CCGC 9 cut(s) 177, 179, 252, 343, 382, 385, 547, 640, 642
SspDI GGCGCC 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 212, 333
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 3 cut(s) 161, 412, 665
TaiI ACGT 2 cut(s) 32, 123
TaqI TCGA 1 cut(s) 228
TatI WGTACW 2 cut(s) 153, 285
TauI GCSGC 5 cut(s) 179, 255, 387, 550, 645
TfiI GAWTC 1 cut(s) 655
TscAI CASTG 4 cut(s) 248, 274, 397, 407
TseFI GTSAC 2 cut(s) 350, 392
TseI GCWGC 4 cut(s) 6, 40, 614, 617
Tsp45I GTSAC 2 cut(s) 350, 392
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 4 cut(s) 248, 274, 397, 407
VpaK11BI GGWCC 2 cut(s) 361, 661
XhoI CTCGAG 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.