Rh5CG235700

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004319
Physical Location & Seq
Forward (+)
24562517 .. 24563344
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG235700.1

Sequence Viewer

Length: 684 bp
ATGAACGGCTTCACTAGCTTCAACGACACGTGGTTCCAGCAGCTCCACCGCCTGGTGCAACAGCTCTCCTCCTGCCCCAAACACCCCACCACCACCGAGCACCAGCACCACCTCCTCCACGTCATCAACAAGGTCATGTCTCACTACGCCGAGTACTACAGCGTCAAGTCTCTGGCTGCCGAGCACGACGCCCTCTCCGTCTTCGTCGCCCCGTGGGCCACCACCCTCGAGCGCTCCCTCCACTGGATCGGCGGATGGCGCCCCACCACCGCCTTCCACCTCGTCTACTCCGAGGCCTCCATCCACTTCGAAGCCCACATCATCGATATCCTCCGCGGATTTCGAACCGGCGACCTTGGCGACCTCTCCCCCGCCCAGTTCCGCAGAGTTAGCGAGCTCCAATGCGAAACTGTGAAGGAGGAGAATGCGATATCGGAGGAGTTATCGGAGTGGCAAGAAGGAGTGAGCGAGCTGATGGGAAGCAGTAGCGATCTGGATGTGAAGACGGGTCTGCTGACGAGCGTGTTGAACAAGGCGGATGATCTGCGGCTGAGAACGGTGAGGAAGGTGGTGGATTTGCTGACACCGCAGCAAGCTGTGGAGTTCTTGATTGCTGCATCCGAGTTGCATTTCGGAGTCCGTGGATGGGGAATTACTCAGGACCGTCACCGCAACAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

227

Amino Acids

25.86

Weight (kDa)

5.93

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 19 - 97 1.4e-25 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 52
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 336
AclWI GGATC 1 cut(s) 254
AcvI CACGTG 1 cut(s) 30
AcyI GRCGYC 2 cut(s) 189, 259
AfaI GTAC 1 cut(s) 155
AfeI AGCGCT 1 cut(s) 233
AfiI CCNNNNNNNGG 3 cut(s) 52, 243, 646
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 2 cut(s) 22, 529
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 6 cut(s) 18, 43, 64, 397, 472, 596
AluI AGCT 6 cut(s) 18, 43, 64, 397, 472, 596
Alw21I GWGCWC 3 cut(s) 102, 186, 399
Alw26I GTCTC 2 cut(s) 144, 174
AlwI GGATC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 227
Aor51HI AGCGCT 1 cut(s) 233
AoxI GGCC 2 cut(s) 216, 294
ApeKI GCWGC 4 cut(s) 40, 176, 589, 614
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 234, 261
AspS9I GGNCC 2 cut(s) 216, 661
AsuHPI GGTGA 2 cut(s) 571, 659
AsuII TTCGAA 2 cut(s) 309, 343
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 661
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 399
BbrPI CACGTG 1 cut(s) 30
BbsI GAAGAC 2 cut(s) 193, 509
Bbv12I GWGCWC 3 cut(s) 102, 186, 399
BbvI GCAGC 4 cut(s) 52, 163, 601, 601
BccI CCATC 4 cut(s) 249, 308, 469, 639
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 144, 174
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 2 cut(s) 235, 262
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 5 cut(s) 41, 177, 548, 590, 615
BlsI GCNGC 5 cut(s) 42, 178, 549, 591, 616
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 661
BmeT110I CYCGRG 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 216, 661
BmiI GGNNCC 2 cut(s) 35, 260
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 1 cut(s) 626
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 2 cut(s) 193, 509
Bpu14I TTCGAA 2 cut(s) 309, 343
Bsa29I ATCGAT 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 189, 259
BsaJI CCNNGG 5 cut(s) 212, 291, 334, 355, 640
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 243, 646
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 2 cut(s) 248, 376
BseBI CCWGG 1 cut(s) 53
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 5 cut(s) 212, 291, 334, 355, 640
BseGI GGATG 6 cut(s) 260, 300, 502, 544, 617, 650
BseLI CCNNNNNNNGG 3 cut(s) 52, 243, 646
BseMII CTCAG 2 cut(s) 542, 671
BseNI ACTGG 2 cut(s) 248, 376
BseRI GAGGAG 4 cut(s) 58, 104, 434, 452
BseXI GCAGC 4 cut(s) 52, 163, 601, 601
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 218, 296
BshNI GGYRCC 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 324
BsiHKAI GWGCWC 3 cut(s) 102, 186, 399
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 3 cut(s) 52, 243, 646
BsmAI GTCTC 2 cut(s) 144, 174
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 2 cut(s) 218, 296
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 2 cut(s) 309, 343
Bsp1286I GDGCHC 3 cut(s) 102, 186, 399
Bsp143I GATC 3 cut(s) 246, 490, 541
BspANI GGCC 2 cut(s) 218, 296
BspCNI CTCAG 2 cut(s) 543, 670
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 35, 260
BspPI GGATC 1 cut(s) 254
BspT104I TTCGAA 2 cut(s) 309, 343
BspT107I GGYRCC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 2 cut(s) 248, 376
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 5 cut(s) 212, 291, 334, 355, 640
BssMI GATC 3 cut(s) 246, 490, 541
BssNI GRCGYC 2 cut(s) 189, 259
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 3 cut(s) 412, 559, 665
BstACI GRCGYC 2 cut(s) 189, 259
BstBAI YACGTR 1 cut(s) 30
BstBI TTCGAA 2 cut(s) 309, 343
BstC8I GCNNGC 3 cut(s) 395, 470, 594
BstDEI CTNAG 2 cut(s) 551, 657
BstDSI CCRYGG 3 cut(s) 212, 334, 640
BstF5I GGATG 6 cut(s) 260, 300, 502, 544, 617, 650
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 2 cut(s) 235, 262
BstHHI GCGC 2 cut(s) 234, 261
BstKTI GATC 3 cut(s) 249, 493, 544
BstMAI GTCTC 2 cut(s) 144, 174
BstMBI GATC 3 cut(s) 246, 490, 541
BstMWI GCNNNNNNNGC 6 cut(s) 15, 215, 258, 357, 390, 586
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 4 cut(s) 52, 163, 601, 601
BstV2I GAAGAC 2 cut(s) 193, 509
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 218, 296
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 3 cut(s) 212, 334, 640
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 6 cut(s) 260, 300, 502, 544, 617, 650
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 395, 470, 594
CfoI GCGC 2 cut(s) 234, 261
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 216, 661
Cfr42I CCGCGG 1 cut(s) 337
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 2 cut(s) 151, 197
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 136
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 551, 657
DinI GGCGCC 1 cut(s) 260
DpnI GATC 3 cut(s) 248, 492, 543
DpnII GATC 3 cut(s) 246, 490, 541
EciI GGCGGA 2 cut(s) 267, 551
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 355
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 399
Eco32I GATATC 2 cut(s) 328, 432
Eco47I GGWCC 1 cut(s) 661
Eco47III AGCGCT 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 397
Eco72I CACGTG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 51
EcoRV GATATC 2 cut(s) 328, 432
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 1 cut(s) 399
EgeI GGCGCC 1 cut(s) 260
EheI GGCGCC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 139
FaiI YATR 1 cut(s) 137
FatI CATG 1 cut(s) 135
FauI CCCGC 1 cut(s) 379
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 5 cut(s) 41, 177, 548, 590, 615
FokI GGATG 6 cut(s) 267, 287, 509, 551, 604, 657
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 5 cut(s) 41, 177, 548, 590, 615
FspBI CTAG 1 cut(s) 15
GlaI GCGC 2 cut(s) 233, 260
GluI GCNGC 5 cut(s) 41, 177, 548, 590, 615
HaeII RGCGCY 2 cut(s) 235, 262
HaeIII GGCC 2 cut(s) 218, 296
HapII CCGG 1 cut(s) 348
HgaI GACGC 2 cut(s) 151, 197
HhaI GCGC 2 cut(s) 234, 261
Hin1I GRCGYC 2 cut(s) 189, 259
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 2 cut(s) 232, 259
HinP1I GCGC 2 cut(s) 232, 259
HinfI GANTC 1 cut(s) 636
HpaII CCGG 1 cut(s) 348
HphI GGTGA 2 cut(s) 571, 659
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 6 cut(s) 292, 436, 448, 622, 635, 683
Hpy188III TCNNGA 3 cut(s) 494, 607, 659
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 2 cut(s) 191, 209
HpyAV CCTTC 4 cut(s) 283, 409, 452, 559
HpyCH4III ACNGT 3 cut(s) 412, 559, 665
HpyCH4IV ACGT 2 cut(s) 29, 120
HpyCH4V TGCA 3 cut(s) 58, 617, 628
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 215, 258, 357, 390, 586
HpyF3I CTNAG 2 cut(s) 551, 657
HpySE526I ACGT 2 cut(s) 29, 120
Hsp92I GRCGYC 2 cut(s) 189, 259
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 2 cut(s) 232, 259
KasI GGCGCC 1 cut(s) 258
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 3 cut(s) 246, 490, 541
LmnI GCTCC 3 cut(s) 48, 239, 402
Lsp1109I GCAGC 4 cut(s) 52, 163, 601, 601
LweI GCATC 1 cut(s) 626
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 29, 120
MaeIII GTNAC 1 cut(s) 665
MalI GATC 3 cut(s) 248, 492, 543
MboI GATC 3 cut(s) 246, 490, 541
MboII GAAGA 2 cut(s) 193, 514
MhlI GDGCHC 3 cut(s) 102, 186, 399
MluCI AATT 2 cut(s) 651, 676
Mly113I GGCGCC 1 cut(s) 259
MlyI GAGTC 1 cut(s) 645
MroXI GAANNNNTTC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 6 cut(s) 15, 215, 258, 357, 390, 586
NarI GGCGCC 1 cut(s) 259
NdeII GATC 3 cut(s) 246, 490, 541
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 35, 260
NmeAIII GCCGAG 2 cut(s) 175, 205
NmuCI GTSAC 1 cut(s) 665
NspV TTCGAA 2 cut(s) 309, 343
PaeR7I CTCGAG 1 cut(s) 227
PceI AGGCCT 1 cut(s) 296
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 288
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 5 cut(s) 42, 178, 549, 591, 616
PleI GAGTC 1 cut(s) 644
PluTI GGCGCC 1 cut(s) 262
PmaCI CACGTG 1 cut(s) 30
PmlI CACGTG 1 cut(s) 30
PpsI GAGTC 1 cut(s) 644
Ppu21I YACGTR 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 51
PspCI CACGTG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 35, 260
PspPI GGNCC 2 cut(s) 216, 661
PspXI VCTCGAGB 1 cut(s) 227
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 399
SacII CCGCGG 1 cut(s) 337
SatI GCNGC 5 cut(s) 41, 177, 548, 590, 615
Sau3AI GATC 3 cut(s) 246, 490, 541
Sau96I GGNCC 2 cut(s) 216, 661
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 1 cut(s) 645
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 3 cut(s) 102, 186, 399
SfaNI GCATC 1 cut(s) 626
SfcI CTRYAG 1 cut(s) 157
SfoI GGCGCC 1 cut(s) 260
Sfr274I CTCGAG 1 cut(s) 227
Sfr303I CCGCGG 1 cut(s) 337
SfuI TTCGAA 2 cut(s) 309, 343
SgrBI CCGCGG 1 cut(s) 337
SinI GGWCC 1 cut(s) 661
SlaI CTCGAG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 651, 676
SseBI AGGCCT 1 cut(s) 296
SspDI GGCGCC 1 cut(s) 258
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 399
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 3 cut(s) 412, 559, 665
TaiI ACGT 2 cut(s) 32, 123
TaqI TCGA 4 cut(s) 228, 309, 324, 343
TasI AATT 2 cut(s) 651, 676
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 550
TscAI CASTG 1 cut(s) 248
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 4 cut(s) 40, 176, 589, 614
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 187, 629
TspRI CASTG 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 661
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 15
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.