Prupe.4G164300_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0004319
Physical Location & Seq
Forward (+)
9547353 .. 9549781
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G164300.2

Sequence Viewer

Length: 690 bp
ATGAGCAGCAGCAGCTTCACCAGCTTCTACGAGACTTGGTTCGAGCAGCTCCACAACCTCGTCCACCAGCTCTCCACCTGTCCCAGACCCCCCACCACCCCTGACCACCACCACCACCTCCTACACGTCGTCCAGAAAGTCATGTCCCACTACGACGAGTACTACCGAGTCAAGGCCCTGGCCGCCGAGCGCGACGCCCTGGCCGTCTTCGTCGCCCCGTGGGCCACCACCCTCGAGCGCTCCCTCCACTGGATCGCAGGCTGGCGCCCCACCACCGCCTTCCACCTCGTCTACTCCGAGTCCTCCATCCACTTCGAGGCCCACATCGTCGACATCCTCCGCGGTTTTAGCACCGGAGACCTCGGGGACCTCTCCCCCTCCCAGTTCCGCCGCGTCAGCGAACTCCAATGCGAAACTGTGAAAGAGGAGAATGCGATATCGGAGGAGTTGTCGGAGTGGCAAGAGGGGGCGAGTGAGCTGATGGGGGCATGCACGAATCTGGATATGAAGATGGGTCGGCTGGTGACCGTGTTGAAGAAGGCTGATAATCTGAGGCTGAGAACGGTGAGGAAGGTGGTGGAGTTGTTGACACCACAGCAGGCTGTGGAGTTTTTGATTGCTGCTGCTGAGTTGCAGTTTGGGGTCCGTGGCTGGGGAATGAATCAGGACCGTCAACGTGGGAATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

230

Amino Acids

26.15

Weight (kDa)

6.05

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 264
AccI GTMKAC 2 cut(s) 291, 330
AccII CGCG 3 cut(s) 192, 342, 393
AciI CCGC 6 cut(s) 183, 276, 340, 342, 388, 391
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 2 cut(s) 180, 201
AcyI GRCGYC 2 cut(s) 195, 265
AfaI GTAC 1 cut(s) 161
AfeI AGCGCT 1 cut(s) 239
AfiI CCNNNNNNNGG 4 cut(s) 172, 249, 316, 652
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 1 cut(s) 535
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 2 cut(s) 177, 198
AluBI AGCT 5 cut(s) 15, 24, 49, 70, 478
AluI AGCT 5 cut(s) 15, 24, 49, 70, 478
Alw26I GTCTC 2 cut(s) 26, 351
AlwI GGATC 1 cut(s) 260
Ama87I CYCGRG 2 cut(s) 233, 362
Aor51HI AGCGCT 1 cut(s) 239
AoxI GGCC 5 cut(s) 174, 180, 201, 222, 318
ApeKI GCWGC 6 cut(s) 6, 9, 12, 46, 620, 623
AspLEI GCGC 3 cut(s) 192, 240, 267
AspS9I GGNCC 6 cut(s) 175, 222, 319, 367, 643, 667
AsuHPI GGTGA 3 cut(s) 10, 535, 577
AvaI CYCGRG 2 cut(s) 233, 362
AvaII GGWCC 3 cut(s) 367, 643, 667
BanI GGYRCC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 6 cut(s) 18, 21, 24, 58, 607, 610
BccI CCATC 3 cut(s) 314, 475, 505
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 179, 200
BcoDI GTCTC 2 cut(s) 26, 351
BfoI RGCGCY 2 cut(s) 241, 268
BglI GCCNNNNNGGC 1 cut(s) 221
BisI GCNGC 8 cut(s) 7, 10, 13, 47, 183, 391, 621, 624
BlsI GCNGC 8 cut(s) 8, 11, 14, 48, 184, 392, 622, 625
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 179, 200
Bme18I GGWCC 3 cut(s) 367, 643, 667
BmeT110I CYCGRG 2 cut(s) 233, 362
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 6 cut(s) 175, 222, 319, 367, 643, 667
BmiI GGNNCC 3 cut(s) 266, 368, 644
BmrFI CCNGG 2 cut(s) 179, 200
BmrI ACTGGG 1 cut(s) 376
BmuI ACTGGG 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 199
BsaHI GRCGYC 2 cut(s) 195, 265
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 6 cut(s) 177, 198, 218, 340, 361, 646
BsaWI WCCGGW 1 cut(s) 353
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 434, 464
Bsc4I CCNNNNNNNGG 4 cut(s) 172, 249, 316, 652
Bse1I ACTGG 2 cut(s) 254, 382
BseBI CCWGG 2 cut(s) 179, 200
BseDI CCNNGG 6 cut(s) 177, 198, 218, 340, 361, 646
BseGI GGATG 2 cut(s) 306, 333
BseLI CCNNNNNNNGG 4 cut(s) 172, 249, 316, 652
BseMII CTCAG 3 cut(s) 542, 548, 618
BseNI ACTGG 2 cut(s) 254, 382
BseRI GAGGAG 2 cut(s) 440, 458
BseXI GCAGC 6 cut(s) 18, 21, 24, 58, 607, 610
BseYI CCCAGC 1 cut(s) 651
Bsh1236I CGCG 3 cut(s) 192, 342, 393
BshFI GGCC 5 cut(s) 176, 182, 203, 224, 320
BshNI GGYRCC 1 cut(s) 264
BsiHKCI CYCGRG 2 cut(s) 233, 362
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 3 cut(s) 66, 130, 380
BslI CCNNNNNNNGG 4 cut(s) 172, 249, 316, 652
BsmAI GTCTC 2 cut(s) 26, 351
BsmFI GGGAC 3 cut(s) 66, 130, 380
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 5 cut(s) 176, 182, 203, 224, 320
Bso31I GGTCTC 1 cut(s) 351
BsoBI CYCGRG 2 cut(s) 233, 362
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 6 cut(s) 183, 276, 340, 342, 388, 391
BspANI GGCC 5 cut(s) 176, 182, 203, 224, 320
BspCNI CTCAG 3 cut(s) 543, 549, 619
BspFNI CGCG 3 cut(s) 192, 342, 393
BspLI GGNNCC 3 cut(s) 266, 368, 644
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 351
BsrI ACTGG 2 cut(s) 254, 382
BssECI CCNNGG 6 cut(s) 177, 198, 218, 340, 361, 646
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 2 cut(s) 195, 265
Bst2UI CCWGG 2 cut(s) 179, 200
Bst4CI ACNGT 4 cut(s) 418, 529, 565, 671
BstACI GRCGYC 2 cut(s) 195, 265
BstC8I GCNNGC 4 cut(s) 259, 263, 490, 600
BstDEI CTNAG 3 cut(s) 551, 557, 627
BstDSI CCRYGG 3 cut(s) 218, 340, 646
BstEII GGTNACC 1 cut(s) 523
BstF5I GGATG 2 cut(s) 306, 333
BstFNI CGCG 3 cut(s) 192, 342, 393
BstH2I RGCGCY 2 cut(s) 241, 268
BstHHI GCGC 3 cut(s) 192, 240, 267
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 26, 351
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 6 cut(s) 12, 21, 182, 221, 348, 396
BstNI CCWGG 2 cut(s) 179, 200
BstNSI RCATGY 1 cut(s) 492
BstPI GGTNACC 1 cut(s) 523
BstSCI CCNGG 2 cut(s) 177, 198
BstUI CGCG 3 cut(s) 192, 342, 393
BstV1I GCAGC 6 cut(s) 18, 21, 24, 58, 607, 610
BstV2I GAAGAC 1 cut(s) 199
BsuRI GGCC 5 cut(s) 176, 182, 203, 224, 320
BtgI CCRYGG 3 cut(s) 218, 340, 646
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 2 cut(s) 306, 333
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 4 cut(s) 259, 263, 490, 600
CfoI GCGC 3 cut(s) 192, 240, 267
Cfr13I GGNCC 6 cut(s) 175, 222, 319, 367, 643, 667
Cfr42I CCGCGG 1 cut(s) 343
CseI GACGC 2 cut(s) 203, 382
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 142, 489
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 3 cut(s) 551, 557, 627
DinI GGCGCC 1 cut(s) 266
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
EaeI YGGCCR 2 cut(s) 180, 201
EciI GGCGGA 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 438
Eco47I GGWCC 3 cut(s) 367, 643, 667
Eco47III AGCGCT 1 cut(s) 239
Eco88I CYCGRG 2 cut(s) 233, 362
Eco91I GGTNACC 1 cut(s) 523
EcoO109I RGGNCCY 2 cut(s) 175, 367
EcoO65I GGTNACC 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 177, 198
EcoRV GATATC 1 cut(s) 438
EgeI GGCGCC 1 cut(s) 266
EheI GGCGCC 1 cut(s) 266
FaeI CATG 2 cut(s) 145, 492
FaiI YATR 3 cut(s) 143, 490, 506
FaqI GGGAC 3 cut(s) 66, 130, 380
FatI CATG 2 cut(s) 141, 488
FblI GTMKAC 2 cut(s) 291, 330
Fnu4HI GCNGC 8 cut(s) 7, 10, 13, 47, 183, 391, 621, 624
FokI GGATG 2 cut(s) 293, 320
Fsp4HI GCNGC 8 cut(s) 7, 10, 13, 47, 183, 391, 621, 624
GlaI GCGC 3 cut(s) 191, 239, 266
GluI GCNGC 8 cut(s) 7, 10, 13, 47, 183, 391, 621, 624
GsaI CCCAGC 1 cut(s) 655
HaeII RGCGCY 2 cut(s) 241, 268
HaeIII GGCC 5 cut(s) 176, 182, 203, 224, 320
HapII CCGG 1 cut(s) 354
HgaI GACGC 2 cut(s) 203, 382
HhaI GCGC 3 cut(s) 192, 240, 267
Hin1I GRCGYC 2 cut(s) 195, 265
Hin1II CATG 2 cut(s) 145, 492
Hin6I GCGC 3 cut(s) 190, 238, 265
HinP1I GCGC 3 cut(s) 190, 238, 265
HincII GTYRAC 3 cut(s) 331, 588, 674
HindII GTYRAC 3 cut(s) 331, 588, 674
HinfI GANTC 4 cut(s) 168, 299, 496, 661
HpaII CCGG 1 cut(s) 354
HphI GGTGA 3 cut(s) 10, 535, 577
Hpy166II GTNNAC 5 cut(s) 64, 292, 331, 588, 674
Hpy188I TCNGA 5 cut(s) 298, 442, 454, 552, 689
Hpy188III TCNNGA 3 cut(s) 133, 500, 665
Hpy8I GTNNAC 5 cut(s) 64, 292, 331, 588, 674
Hpy99I CGWCG 5 cut(s) 131, 158, 197, 215, 332
HpyAV CCTTC 3 cut(s) 289, 532, 565
HpyCH4III ACNGT 4 cut(s) 418, 529, 565, 671
HpyCH4IV ACGT 2 cut(s) 126, 676
HpyCH4V TGCA 2 cut(s) 492, 634
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 21, 182, 221, 348, 396
HpyF3I CTNAG 3 cut(s) 551, 557, 627
HpySE526I ACGT 2 cut(s) 126, 676
Hsp92I GRCGYC 2 cut(s) 195, 265
Hsp92II CATG 2 cut(s) 145, 492
HspAI GCGC 3 cut(s) 190, 238, 265
KasI GGCGCC 1 cut(s) 264
KspI CCGCGG 1 cut(s) 343
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 2 cut(s) 54, 245
Lsp1109I GCAGC 6 cut(s) 18, 21, 24, 58, 607, 610
MaeII ACGT 2 cut(s) 126, 676
MaeIII GTNAC 1 cut(s) 523
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 3 cut(s) 199, 520, 547
Mly113I GGCGCC 1 cut(s) 265
MlyI GAGTC 2 cut(s) 177, 308
MmeI TCCRAC 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 2 cut(s) 179, 200
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 2 cut(s) 179, 200
MvnI CGCG 3 cut(s) 192, 342, 393
MwoI GCNNNNNNNGC 6 cut(s) 12, 21, 182, 221, 348, 396
NarI GGCGCC 1 cut(s) 265
NdeII GATC 1 cut(s) 252
NlaIII CATG 2 cut(s) 145, 492
NlaIV GGNNCC 3 cut(s) 266, 368, 644
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 1 cut(s) 492
PaeI GCATGC 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 233
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 294
PctI GAATGC 1 cut(s) 436
PfeI GAWTC 2 cut(s) 496, 661
PkrI GCNGC 8 cut(s) 8, 11, 14, 48, 184, 392, 622, 625
PleI GAGTC 2 cut(s) 176, 307
PluTI GGCGCC 1 cut(s) 268
PpsI GAGTC 2 cut(s) 176, 307
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 177, 198
PspEI GGTNACC 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 651
PspGI CCWGG 2 cut(s) 177, 198
PspN4I GGNNCC 3 cut(s) 266, 368, 644
PspPI GGNCC 6 cut(s) 175, 222, 319, 367, 643, 667
PspPPI RGGWCCY 1 cut(s) 367
PspXI VCTCGAGB 1 cut(s) 233
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacII CCGCGG 1 cut(s) 343
SalI GTCGAC 1 cut(s) 329
SatI GCNGC 8 cut(s) 7, 10, 13, 47, 183, 391, 621, 624
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 6 cut(s) 175, 222, 319, 367, 643, 667
ScaI AGTACT 1 cut(s) 161
SchI GAGTC 2 cut(s) 177, 308
ScrFI CCNGG 2 cut(s) 179, 200
SfoI GGCGCC 1 cut(s) 266
Sfr274I CTCGAG 1 cut(s) 233
Sfr303I CCGCGG 1 cut(s) 343
SgrBI CCGCGG 1 cut(s) 343
SinI GGWCC 3 cut(s) 367, 643, 667
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SphI GCATGC 1 cut(s) 492
SsiI CCGC 6 cut(s) 183, 276, 340, 342, 388, 391
SspDI GGCGCC 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 177, 198
TaaI ACNGT 4 cut(s) 418, 529, 565, 671
TaiI ACGT 2 cut(s) 129, 679
TaqI TCGA 4 cut(s) 42, 234, 315, 330
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 185, 393
TfiI GAWTC 2 cut(s) 496, 661
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 6 cut(s) 6, 9, 12, 46, 620, 623
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 2 cut(s) 521, 674
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 1 cut(s) 254
VpaK11BI GGWCC 3 cut(s) 367, 643, 667
XceI RCATGY 1 cut(s) 492
XhoI CTCGAG 1 cut(s) 233
XmiI GTMKAC 2 cut(s) 291, 330
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.