Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006540

Physical Location & Seq

Genomic Coordinates Reverse (-)

6019973 .. 6021147

Gene Structure 1175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G17600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGGTCTCTAACTCTTGTTCTTCATTTTCTTCATCCTCTGTCGACAGTACTAAACCTTCTCCTTCTGAATCTTCTGTTAATCTCTCCCTTAGTCTCACATTTCCTTCTACTTCTCCACAAAGAGAAGCAAGACAAGATTGGCCACCGATAAAGTCTAGATTAAGAGATACACTAAAGGGTCGTCGTCTTCTTCGTCGTGGTGATGACACTTCTCTCTTTGTTAAGGTTTATATGGAAGGTGTTCCCATTGGAAGAAAACTCGACCTTTGCGTATTCTCAGGCTACGAGAGTCTATTAGAAAATCTCTCTCACATGTTCGATACTTCAATCATCTGCGGTAATCGAGATCGAAAACATCATGTTTTGACATATGAAGACAAGGATGGAGATTGGATGATGGTCGGAGATATTCCATGGGATATGTTTCTTGAAACCGTGAGAAGACTAAAGATCACGAGACCGGAGAGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010262 GO:0010468 GO:0010556 GO:0010588 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

158

Amino Acids

18.15

Weight (kDa)

7.73

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	47 - 154	4.5e-29	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17600
fragaria_vesca	FvH4_4g21780
malus_domestica	MD13G1137000.v1.1 MD16G1132500.v1.1
prunus_persica	Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1
pyrus_communis	pycom16g11680
rosa_chinensis	RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791
rosa_laevigata	RLG00000007125 RLG00000007191
rosa_multiflora	Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369680 Rroxscaffold_5G00370470
rosa_rugosa	Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000
rosa_samantha	Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900
rosa_wichuraiana	Rw4G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	143
AfaI	GTAC	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	2 cut(s)	330, 434
Alw26I	GTCTC	3 cut(s)	13, 101, 454
AoxI	GGCC	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	145
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
BauI	CACGAG	1 cut(s)	457
BbsI	GAAGAC	3 cut(s)	182, 384, 451
BccI	CCATC	2 cut(s)	380, 394
BcoDI	GTCTC	3 cut(s)	13, 101, 454
BfaI	CTAG	1 cut(s)	159
BmcAI	AGTACT	1 cut(s)	52
BpiI	GAAGAC	3 cut(s)	182, 384, 451
BsaI	GGTCTC	2 cut(s)	13, 454
BsaJI	CCNNGG	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	3 cut(s)	35, 391, 402
BseMII	CTCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	464
BsmAI	GTCTC	3 cut(s)	13, 101, 454
BsnI	GGCC	1 cut(s)	145
Bso31I	GGTCTC	2 cut(s)	13, 454
Bsp143I	GATC	2 cut(s)	349, 453
Bsp19I	CCATGG	1 cut(s)	416
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	293
BspTNI	GGTCTC	2 cut(s)	13, 454
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	2 cut(s)	349, 453
BssSI	CACGAG	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	416
Bst2BI	CACGAG	1 cut(s)	457
Bst4CI	ACNGT	2 cut(s)	50, 439
BstDEI	CTNAG	2 cut(s)	92, 280
BstDSI	CCRYGG	1 cut(s)	416
BstF5I	GGATG	3 cut(s)	35, 391, 402
BstKTI	GATC	2 cut(s)	352, 456
BstMAI	GTCTC	3 cut(s)	13, 101, 454
BstMBI	GATC	2 cut(s)	349, 453
BstNSI	RCATGY	1 cut(s)	319
BstV2I	GAAGAC	3 cut(s)	182, 384, 451
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	35, 391, 402
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	3 cut(s)	316, 362, 417
CviJI	RGCY	2 cut(s)	145, 285
CviKI_1	RGCY	2 cut(s)	145, 285
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	2 cut(s)	92, 280
DpnI	GATC	2 cut(s)	351, 455
DpnII	GATC	2 cut(s)	349, 453
EaeI	YGGCCR	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	416
Eco31I	GGTCTC	2 cut(s)	13, 454
EcoT14I	CCWWGG	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	3 cut(s)	319, 365, 420
FaiI	YATR	8 cut(s)	234, 236, 317, 363, 373, 375, 418, 425
FatI	CATG	3 cut(s)	315, 361, 416
FauNDI	CATATG	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	45
FokI	GGATG	3 cut(s)	22, 398, 409
FspBI	CTAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	464
Hin1II	CATG	3 cut(s)	319, 365, 420
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	2 cut(s)	71, 292
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	70, 407
Hpy188III	TCNNGA	4 cut(s)	159, 347, 431, 457
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	2 cut(s)	189, 201
HpyAV	CCTTC	4 cut(s)	69, 75, 117, 233
HpyCH4III	ACNGT	2 cut(s)	50, 439
HpyF3I	CTNAG	2 cut(s)	92, 280
Hsp92II	CATG	3 cut(s)	319, 365, 420
Kzo9I	GATC	2 cut(s)	349, 453
LpnPI	CCDG	1 cut(s)	267
MaeI	CTAG	1 cut(s)	159
MalI	GATC	2 cut(s)	351, 455
MboI	GATC	2 cut(s)	349, 453
MboII	GAAGA	8 cut(s)	15, 24, 66, 182, 185, 267, 389, 456
MlsI	TGGCCA	1 cut(s)	145
MluNI	TGGCCA	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	2 cut(s)	49, 462
Mox20I	TGGCCA	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	4 cut(s)	81, 164, 225, 475
Msp20I	TGGCCA	1 cut(s)	145
MspI	CCGG	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	416
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	2 cut(s)	349, 453
NlaIII	CATG	3 cut(s)	319, 365, 420
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 270
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PscI	ACATGT	1 cut(s)	315
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	4 cut(s)	81, 164, 225, 475
Sau3AI	GATC	2 cut(s)	349, 453
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	301
SetI	ASST	6 cut(s)	9, 61, 231, 244, 270, 473
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	2 cut(s)	50, 439
TaqI	TCGA	5 cut(s)	45, 264, 321, 346, 352
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	4 cut(s)	81, 164, 225, 475
Tru9I	TTAA	4 cut(s)	81, 164, 225, 475
TspDTI	ATGAA	3 cut(s)	15, 24, 390
XbaI	TCTAGA	1 cut(s)	158
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.