Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17600 |
| fragaria_vesca | FvH4_4g21780 |
| malus_domestica | MD13G1137000.v1.1 MD16G1132500.v1.1 |
| prunus_persica | Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1 |
| pyrus_communis | pycom16g11680 |
| rosa_chinensis | RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791 |
| rosa_laevigata | RLG00000007125 RLG00000007191 |
| rosa_multiflora | Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00369680 Rroxscaffold_5G00370470 |
| rosa_rugosa | Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000 |
| rosa_samantha | Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900 |
| rosa_wichuraiana | Rw4G024210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 2 cut(s) | 31, 88 |
| BccI | CCATC | 1 cut(s) | 41 |
| BclI | TGATCA | 1 cut(s) | 63 |
| BmsI | GCATC | 2 cut(s) | 46, 165 |
| BsaBI | GATNNNNATC | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 1 cut(s) | 194 |
| Bse8I | GATNNNNATC | 1 cut(s) | 114 |
| BseDI | CCNNGG | 1 cut(s) | 194 |
| BseGI | GGATG | 1 cut(s) | 180 |
| BseJI | GATNNNNATC | 1 cut(s) | 114 |
| BseMII | CTCAG | 1 cut(s) | 65 |
| Bsp143I | GATC | 2 cut(s) | 63, 157 |
| BspCNI | CTCAG | 1 cut(s) | 66 |
| BssECI | CCNNGG | 1 cut(s) | 194 |
| BssMI | GATC | 2 cut(s) | 63, 157 |
| BssT1I | CCWWGG | 1 cut(s) | 194 |
| BstDEI | CTNAG | 1 cut(s) | 74 |
| BstF5I | GGATG | 1 cut(s) | 180 |
| BstKTI | GATC | 2 cut(s) | 66, 160 |
| BstMBI | GATC | 2 cut(s) | 63, 157 |
| BtsCI | GGATG | 1 cut(s) | 180 |
| CviAII | CATG | 2 cut(s) | 82, 119 |
| CviJI | RGCY | 1 cut(s) | 78 |
| CviKI_1 | RGCY | 1 cut(s) | 78 |
| DdeI | CTNAG | 1 cut(s) | 74 |
| DpnI | GATC | 2 cut(s) | 65, 159 |
| DpnII | GATC | 2 cut(s) | 63, 157 |
| Eco130I | CCWWGG | 1 cut(s) | 194 |
| EcoT14I | CCWWGG | 1 cut(s) | 194 |
| ErhI | CCWWGG | 1 cut(s) | 194 |
| FaeI | CATG | 2 cut(s) | 85, 122 |
| FaiI | YATR | 6 cut(s) | 54, 83, 103, 120, 141, 153 |
| FatI | CATG | 2 cut(s) | 81, 118 |
| FbaI | TGATCA | 1 cut(s) | 63 |
| FokI | GGATG | 1 cut(s) | 187 |
| Hin1II | CATG | 2 cut(s) | 85, 122 |
| HinfI | GANTC | 2 cut(s) | 9, 31 |
| Hpy188I | TCNGA | 2 cut(s) | 75, 130 |
| Hpy188III | TCNNGA | 4 cut(s) | 44, 88, 107, 161 |
| HpyAV | CCTTC | 1 cut(s) | 158 |
| HpyF3I | CTNAG | 1 cut(s) | 74 |
| Hsp92II | CATG | 2 cut(s) | 85, 122 |
| Ksp22I | TGATCA | 1 cut(s) | 63 |
| Kzo9I | GATC | 2 cut(s) | 63, 157 |
| LpnPI | CCDG | 2 cut(s) | 120, 164 |
| LweI | GCATC | 2 cut(s) | 46, 165 |
| MalI | GATC | 2 cut(s) | 65, 159 |
| MboI | GATC | 2 cut(s) | 63, 157 |
| MboII | GAAGA | 1 cut(s) | 167 |
| MfeI | CAATTG | 1 cut(s) | 15 |
| MluCI | AATT | 2 cut(s) | 15, 26 |
| MmeI | TCCRAC | 1 cut(s) | 163 |
| MnlI | CCTC | 1 cut(s) | 89 |
| MseI | TTAA | 1 cut(s) | 146 |
| MunI | CAATTG | 1 cut(s) | 15 |
| NdeII | GATC | 2 cut(s) | 63, 157 |
| NlaIII | CATG | 2 cut(s) | 85, 122 |
| PfeI | GAWTC | 2 cut(s) | 9, 31 |
| SaqAI | TTAA | 1 cut(s) | 146 |
| Sau3AI | GATC | 2 cut(s) | 63, 157 |
| SfaNI | GCATC | 2 cut(s) | 46, 165 |
| SgeI | CNNG | 7 cut(s) | 56, 94, 100, 119, 131, 173, 191 |
| Sse9I | AATT | 2 cut(s) | 15, 26 |
| SspI | AATATT | 1 cut(s) | 137 |
| StyI | CCWWGG | 1 cut(s) | 194 |
| TasI | AATT | 2 cut(s) | 15, 26 |
| TfiI | GAWTC | 2 cut(s) | 9, 31 |
| Tru1I | TTAA | 1 cut(s) | 146 |
| Tru9I | TTAA | 1 cut(s) | 146 |
| TspDTI | ATGAA | 2 cut(s) | 113, 168 |