Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006540

Physical Location & Seq

Genomic Coordinates Forward (+)

39322161 .. 39323066

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0228800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATCGCAGAATTCAGAAGCATGCAAACAAGGCCAGAATGGCAAGAAGAATGGCGTGGGAAGCTAGACATCAAGACCGGATCAGTCAATTACCGGATGGAATTCTCTCTCACATACTTTCTTTCCTTCCCACGAGAGATGCCGTACAAACCACTATTTTGTCTAAAAGATGGAACAACCTTAGGATTTCCATTCCCAACCTAGACCTCGACCACAATTTGAAACTAAGTGATAAATTTGGAGAGTTTGTTGATGGTGTTCTTTCACTGCATGCCTCTTCAAACATCCGAAAGTTTCGTCTATGTAGTCGAAATTACTATTATTACGGAGATGAATCAGATGATTATTTGTCTCGCAATTCAAGATGGATATGCGACGCCATGAGGCATAAAATAGTTGAACTTGATCTTGATATATTTGATAAGAATGGTCCTAGAAGGTTGGGAGACCTTCAATTGCCTGTGAGCCTTTTCACATGCAAAACTCTTGTGGCTTTGAAGGTGAGTTCAAATTGTATGAACCTTGCTCCTCCTCCTTCGGCATCAGCATGTTTTCCAAGTCTCAAGTCCCTCCGCTATACACTTGGTTGGCCTGATAGTGCCTCAATGTTCGAAATGCTCGCTTCCAAGTGTCCTGTACTTGAAGACTTGACCATCGATACATTTACATTTGGAAATGCCTATACTCTAAATATCCCTGCAGCAGGATTGAAAACGTTTAGAATTCTAGGTGACTTAATGGATGCGGATAAGTACAGTTTTTCTATCAATGCCCCAAAGCTTGAAAACCTTGTCGTCTCAGGTCAAGTTGGTTTATCAAATTACTACTTTTCGAACAATGCAAAAGCCATGGTCAAAGCTGAGATCCATCTTGACGCAGACGGAATGATCGGATTGATAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

301

Amino Acids

34.01

Weight (kDa)

8.81

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	28 - 61	1.4e-06	F-box domain
LRR_At5g56370	PF24758	122 - 271	4.2e-11	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17600
fragaria_vesca	FvH4_4g21780
malus_domestica	MD13G1137000.v1.1 MD16G1132500.v1.1
prunus_persica	Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1
pyrus_communis	pycom16g11680
rosa_chinensis	RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791
rosa_laevigata	RLG00000007125 RLG00000007191
rosa_multiflora	Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369680 Rroxscaffold_5G00370470
rosa_rugosa	Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000
rosa_samantha	Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900
rosa_wichuraiana	Rw4G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	574, 746
AclI	AACGTT	1 cut(s)	716
AclWI	GGATC	3 cut(s)	12, 89, 859
AcsI	RAATTY	4 cut(s)	12, 102, 236, 723
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	3 cut(s)	147, 639, 755
AfiI	CCNNNNNNNGG	1 cut(s)	704
AluBI	AGCT	3 cut(s)	65, 781, 860
AluI	AGCT	3 cut(s)	65, 781, 860
Alw26I	GTCTC	4 cut(s)	357, 441, 566, 802
AlwI	GGATC	3 cut(s)	12, 89, 859
AoxI	GGCC	2 cut(s)	33, 590
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	4 cut(s)	12, 102, 236, 723
ArsI	GACNNNNNNTTYG	2 cut(s)	283, 315
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	514, 743
AsuII	TTCGAA	2 cut(s)	612, 833
AvaII	GGWCC	1 cut(s)	431
AxyI	CCTNAGG	1 cut(s)	182
BauI	CACGAG	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	713
BccI	CCATC	6 cut(s)	92, 165, 248, 360, 662, 876
BceAI	ACGGC	1 cut(s)	128
BcoDI	GTCTC	4 cut(s)	357, 441, 566, 802
BfaI	CTAG	5 cut(s)	66, 203, 435, 728, 904
BfmI	CTRYAG	1 cut(s)	699
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	703
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmsI	GCATC	3 cut(s)	130, 551, 733
BpiI	GAAGAC	1 cut(s)	651
Bpu14I	TTCGAA	2 cut(s)	612, 833
BpuEI	CTTGAG	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	849
BsaWI	WCCGGW	2 cut(s)	78, 94
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse21I	CCTNAGG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	849
BseGI	GGATG	3 cut(s)	103, 285, 748
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMII	CTCAG	2 cut(s)	813, 852
BseRI	GAGGAG	2 cut(s)	519, 522
BseXI	GCAGC	1 cut(s)	713
BshFI	GGCC	2 cut(s)	35, 592
BshVI	ATCGAT	1 cut(s)	657
BsiSI	CCGG	2 cut(s)	79, 95
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	4 cut(s)	357, 441, 566, 802
BsmBI	CGTCTC	1 cut(s)	802
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	35, 592
Bso31I	GGTCTC	1 cut(s)	441
Bsp119I	TTCGAA	2 cut(s)	612, 833
Bsp143I	GATC	5 cut(s)	4, 81, 406, 864, 888
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	2 cut(s)	574, 746
BspANI	GGCC	2 cut(s)	35, 592
BspCNI	CTCAG	2 cut(s)	812, 853
BspDI	ATCGAT	1 cut(s)	657
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	3 cut(s)	12, 89, 859
BspT104I	TTCGAA	2 cut(s)	612, 833
BspTNI	GGTCTC	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	849
BssMI	GATC	5 cut(s)	4, 81, 406, 864, 888
BssNI	GRCGYC	1 cut(s)	378
BssSI	CACGAG	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	849
Bst2BI	CACGAG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	758
Bst6I	CTCTTC	1 cut(s)	283
BstACI	GRCGYC	1 cut(s)	378
BstBI	TTCGAA	2 cut(s)	612, 833
BstC8I	GCNNGC	3 cut(s)	24, 273, 621
BstDEI	CTNAG	4 cut(s)	182, 227, 799, 861
BstDSI	CCRYGG	1 cut(s)	849
BstENI	CCTNNNNNAGG	1 cut(s)	702
BstF5I	GGATG	3 cut(s)	103, 285, 748
BstKTI	GATC	5 cut(s)	7, 84, 409, 867, 891
BstMAI	GTCTC	4 cut(s)	357, 441, 566, 802
BstMBI	GATC	5 cut(s)	4, 81, 406, 864, 888
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 41, 62
BstNSI	RCATGY	4 cut(s)	26, 275, 480, 552
BstSFI	CTRYAG	1 cut(s)	699
BstV1I	GCAGC	1 cut(s)	713
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	1 cut(s)	864
BstYI	RGATCY	1 cut(s)	864
Bsu15I	ATCGAT	1 cut(s)	657
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	35, 592
BsuTUI	ATCGAT	1 cut(s)	657
BtgI	CCRYGG	1 cut(s)	849
BtsCI	GGATG	3 cut(s)	103, 285, 748
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	3 cut(s)	24, 273, 621
Cfr13I	GGNCC	1 cut(s)	431
ClaI	ATCGAT	1 cut(s)	657
CseI	GACGC	2 cut(s)	386, 884
Csp6I	GTAC	3 cut(s)	146, 638, 754
CviAII	CATG	6 cut(s)	23, 272, 382, 477, 549, 850
CviJI	RGCY	8 cut(s)	35, 65, 468, 494, 592, 781, 848, 860
CviKI_1	RGCY	8 cut(s)	35, 65, 468, 494, 592, 781, 848, 860
CviQI	GTAC	3 cut(s)	146, 638, 754
DdeI	CTNAG	4 cut(s)	182, 227, 799, 861
DpnI	GATC	5 cut(s)	6, 83, 408, 866, 890
DpnII	GATC	5 cut(s)	4, 81, 406, 864, 888
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	849
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	431
Eco81I	CCTNAGG	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	702
EcoRI	GAATTC	3 cut(s)	12, 102, 723
EcoT14I	CCWWGG	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	849
Esp3I	CGTCTC	1 cut(s)	802
FaeI	CATG	6 cut(s)	26, 275, 385, 480, 552, 853
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	6 cut(s)	22, 271, 381, 476, 548, 849
Fnu4HI	GCNGC	1 cut(s)	702
FokI	GGATG	3 cut(s)	110, 272, 755
Fsp4HI	GCNGC	1 cut(s)	702
FspBI	CTAG	5 cut(s)	66, 203, 435, 728, 904
GluI	GCNGC	1 cut(s)	702
HaeIII	GGCC	2 cut(s)	35, 592
HapII	CCGG	2 cut(s)	79, 95
HgaI	GACGC	2 cut(s)	386, 884
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	6 cut(s)	26, 275, 385, 480, 552, 853
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	2 cut(s)	79, 95
HphI	GGTGA	2 cut(s)	514, 743
Hpy188I	TCNGA	4 cut(s)	18, 290, 340, 893
Hpy188III	TCNNGA	4 cut(s)	74, 363, 410, 872
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	5 cut(s)	137, 432, 461, 493, 546
HpyCH4III	ACNGT	1 cut(s)	758
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	5 cut(s)	26, 271, 480, 701, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 41, 62
HpyF3I	CTNAG	4 cut(s)	182, 227, 799, 861
HpySE526I	ACGT	1 cut(s)	716
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	6 cut(s)	26, 275, 385, 480, 552, 853
Kzo9I	GATC	5 cut(s)	4, 81, 406, 864, 888
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	9 cut(s)	49, 92, 108, 474, 606, 648, 690, 711, 786
Lsp1109I	GCAGC	1 cut(s)	713
LweI	GCATC	3 cut(s)	130, 551, 733
MaeI	CTAG	5 cut(s)	66, 203, 435, 728, 904
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	5 cut(s)	6, 83, 408, 866, 890
MboI	GATC	5 cut(s)	4, 81, 406, 864, 888
MboII	GAAGA	3 cut(s)	60, 270, 656
MfeI	CAATTG	1 cut(s)	455
MflI	RGATCY	1 cut(s)	864
MnlI	CCTC	7 cut(s)	218, 286, 378, 540, 543, 581, 613
MseI	TTAA	1 cut(s)	737
MslI	CAYNNNNRTG	1 cut(s)	547
MspI	CCGG	2 cut(s)	79, 95
MunI	CAATTG	1 cut(s)	455
MwoI	GCNNNNNNNGC	3 cut(s)	32, 41, 62
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	5 cut(s)	4, 81, 406, 864, 888
NlaIII	CATG	6 cut(s)	26, 275, 385, 480, 552, 853
NmuCI	GTSAC	1 cut(s)	731
NspI	RCATGY	4 cut(s)	26, 275, 480, 552
NspV	TTCGAA	2 cut(s)	612, 833
PaeI	GCATGC	2 cut(s)	26, 275
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	703
Psp1406I	AACGTT	1 cut(s)	716
PspPI	GGNCC	1 cut(s)	431
PstI	CTGCAG	1 cut(s)	703
PsuI	RGATCY	1 cut(s)	864
RsaI	GTAC	3 cut(s)	147, 639, 755
RsaNI	GTAC	3 cut(s)	146, 638, 754
RseI	CAYNNNNRTG	1 cut(s)	547
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	1 cut(s)	702
Sau3AI	GATC	5 cut(s)	4, 81, 406, 864, 888
Sau96I	GGNCC	1 cut(s)	431
SfaNI	GCATC	3 cut(s)	130, 551, 733
SfcI	CTRYAG	1 cut(s)	699
SfuI	TTCGAA	2 cut(s)	612, 833
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	547
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SphI	GCATGC	2 cut(s)	26, 275
SsiI	CCGC	2 cut(s)	574, 746
SspMI	CTAG	5 cut(s)	66, 203, 435, 728, 904
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	1 cut(s)	758
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	5 cut(s)	210, 310, 612, 657, 833
TatI	WGTACW	2 cut(s)	637, 753
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	2 cut(s)	348, 533
TspGWI	ACGGA	2 cut(s)	342, 897
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	702
XapI	RAATTY	4 cut(s)	12, 102, 236, 723
XceI	RCATGY	4 cut(s)	26, 275, 480, 552
XspI	CTAG	5 cut(s)	66, 203, 435, 728, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.