Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17600 |
| fragaria_vesca | FvH4_4g21780 |
| malus_domestica | MD13G1137000.v1.1 MD16G1132500.v1.1 |
| prunus_persica | Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1 |
| pyrus_communis | pycom16g11680 |
| rosa_chinensis | RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791 |
| rosa_laevigata | RLG00000007125 RLG00000007191 |
| rosa_multiflora | Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00369680 Rroxscaffold_5G00370470 |
| rosa_rugosa | Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000 |
| rosa_samantha | Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900 |
| rosa_wichuraiana | Rw4G024210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 177 |
| AccB1I | GGYRCC | 1 cut(s) | 177 |
| AcsI | RAATTY | 1 cut(s) | 250 |
| AfaI | GTAC | 1 cut(s) | 179 |
| AgsI | TTSAA | 8 cut(s) | 40, 49, 190, 278, 333, 400, 407, 434 |
| AluBI | AGCT | 2 cut(s) | 94, 395 |
| AluI | AGCT | 2 cut(s) | 94, 395 |
| Alw21I | GWGCWC | 1 cut(s) | 465 |
| Alw26I | GTCTC | 1 cut(s) | 446 |
| AoxI | GGCC | 2 cut(s) | 55, 182 |
| ApeKI | GCWGC | 1 cut(s) | 94 |
| ApoI | RAATTY | 1 cut(s) | 250 |
| Asp718I | GGTACC | 1 cut(s) | 177 |
| AspS9I | GGNCC | 1 cut(s) | 183 |
| AsuHPI | GGTGA | 3 cut(s) | 99, 167, 218 |
| BanI | GGYRCC | 1 cut(s) | 177 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 170, 202 |
| BbsI | GAAGAC | 1 cut(s) | 425 |
| Bbv12I | GWGCWC | 1 cut(s) | 465 |
| BbvI | GCAGC | 1 cut(s) | 81 |
| BcoDI | GTCTC | 1 cut(s) | 446 |
| BisI | GCNGC | 1 cut(s) | 95 |
| BlsI | GCNGC | 1 cut(s) | 96 |
| BmgT120I | GGNCC | 1 cut(s) | 183 |
| BmiI | GGNNCC | 1 cut(s) | 179 |
| BpiI | GAAGAC | 1 cut(s) | 425 |
| BpuEI | CTTGAG | 1 cut(s) | 215 |
| Bse118I | RCCGGY | 1 cut(s) | 180 |
| BseXI | GCAGC | 1 cut(s) | 81 |
| BshFI | GGCC | 2 cut(s) | 57, 184 |
| BshNI | GGYRCC | 1 cut(s) | 177 |
| BsiHKAI | GWGCWC | 1 cut(s) | 465 |
| BsiSI | CCGG | 1 cut(s) | 181 |
| BsmAI | GTCTC | 1 cut(s) | 446 |
| BsnI | GGCC | 2 cut(s) | 57, 184 |
| Bsp1286I | GDGCHC | 1 cut(s) | 465 |
| Bsp143I | GATC | 1 cut(s) | 104 |
| BspANI | GGCC | 2 cut(s) | 57, 184 |
| BspLI | GGNNCC | 1 cut(s) | 179 |
| BspT107I | GGYRCC | 1 cut(s) | 177 |
| BsrFI | RCCGGY | 1 cut(s) | 180 |
| BssAI | RCCGGY | 1 cut(s) | 180 |
| BssMI | GATC | 1 cut(s) | 104 |
| BstDEI | CTNAG | 1 cut(s) | 314 |
| BstKTI | GATC | 1 cut(s) | 107 |
| BstMAI | GTCTC | 1 cut(s) | 446 |
| BstMBI | GATC | 1 cut(s) | 104 |
| BstV1I | GCAGC | 1 cut(s) | 81 |
| BstV2I | GAAGAC | 1 cut(s) | 425 |
| BsuRI | GGCC | 2 cut(s) | 57, 184 |
| Cfr10I | RCCGGY | 1 cut(s) | 180 |
| Cfr13I | GGNCC | 1 cut(s) | 183 |
| Csp6I | GTAC | 1 cut(s) | 178 |
| CviAII | CATG | 2 cut(s) | 150, 256 |
| CviJI | RGCY | 5 cut(s) | 57, 94, 184, 374, 395 |
| CviKI_1 | RGCY | 5 cut(s) | 57, 94, 184, 374, 395 |
| CviQI | GTAC | 1 cut(s) | 178 |
| DdeI | CTNAG | 1 cut(s) | 314 |
| DpnI | GATC | 1 cut(s) | 106 |
| DpnII | GATC | 1 cut(s) | 104 |
| FaeI | CATG | 2 cut(s) | 153, 259 |
| FaiI | YATR | 9 cut(s) | 84, 151, 168, 248, 257, 264, 291, 303, 387 |
| FatI | CATG | 2 cut(s) | 149, 255 |
| Fnu4HI | GCNGC | 1 cut(s) | 95 |
| Fsp4HI | GCNGC | 1 cut(s) | 95 |
| GluI | GCNGC | 1 cut(s) | 95 |
| HaeIII | GGCC | 2 cut(s) | 57, 184 |
| HapII | CCGG | 1 cut(s) | 181 |
| Hin1II | CATG | 2 cut(s) | 153, 259 |
| HincII | GTYRAC | 1 cut(s) | 324 |
| HindII | GTYRAC | 1 cut(s) | 324 |
| HindIII | AAGCTT | 1 cut(s) | 393 |
| HinfI | GANTC | 1 cut(s) | 358 |
| HpaI | GTTAAC | 1 cut(s) | 324 |
| HpaII | CCGG | 1 cut(s) | 181 |
| HphI | GGTGA | 3 cut(s) | 99, 167, 218 |
| Hpy166II | GTNNAC | 2 cut(s) | 158, 324 |
| Hpy188I | TCNGA | 1 cut(s) | 451 |
| Hpy188III | TCNNGA | 2 cut(s) | 116, 232 |
| Hpy8I | GTNNAC | 2 cut(s) | 158, 324 |
| Hpy99I | CGWCG | 1 cut(s) | 366 |
| HpyAV | CCTTC | 4 cut(s) | 33, 37, 43, 196 |
| HpyCH4IV | ACGT | 1 cut(s) | 13 |
| HpyCH4V | TGCA | 2 cut(s) | 298, 385 |
| HpyF3I | CTNAG | 1 cut(s) | 314 |
| HpySE526I | ACGT | 1 cut(s) | 13 |
| Hsp92II | CATG | 2 cut(s) | 153, 259 |
| KpnI | GGTACC | 1 cut(s) | 181 |
| KspAI | GTTAAC | 1 cut(s) | 324 |
| Kzo9I | GATC | 1 cut(s) | 104 |
| LpnPI | CCDG | 4 cut(s) | 71, 101, 194, 210 |
| Lsp1109I | GCAGC | 1 cut(s) | 81 |
| MaeII | ACGT | 1 cut(s) | 13 |
| MalI | GATC | 1 cut(s) | 106 |
| MboI | GATC | 1 cut(s) | 104 |
| MboII | GAAGA | 2 cut(s) | 131, 430 |
| MhlI | GDGCHC | 1 cut(s) | 465 |
| MluCI | AATT | 4 cut(s) | 34, 250, 438, 482 |
| MlyI | GAGTC | 1 cut(s) | 352 |
| MnlI | CCTC | 4 cut(s) | 193, 232, 239, 312 |
| MseI | TTAA | 2 cut(s) | 323, 354 |
| MspI | CCGG | 1 cut(s) | 181 |
| NdeII | GATC | 1 cut(s) | 104 |
| NlaIII | CATG | 2 cut(s) | 153, 259 |
| NlaIV | GGNNCC | 1 cut(s) | 179 |
| NmeAIII | GCCGAG | 1 cut(s) | 400 |
| PkrI | GCNGC | 1 cut(s) | 96 |
| PleI | GAGTC | 1 cut(s) | 352 |
| PpsI | GAGTC | 1 cut(s) | 352 |
| PspN4I | GGNNCC | 1 cut(s) | 179 |
| PspPI | GGNCC | 1 cut(s) | 183 |
| RsaI | GTAC | 1 cut(s) | 179 |
| RsaNI | GTAC | 1 cut(s) | 178 |
| SaqAI | TTAA | 2 cut(s) | 323, 354 |
| SatI | GCNGC | 1 cut(s) | 95 |
| Sau3AI | GATC | 1 cut(s) | 104 |
| Sau96I | GGNCC | 1 cut(s) | 183 |
| SchI | GAGTC | 1 cut(s) | 352 |
| SduI | GDGCHC | 1 cut(s) | 465 |
| SetI | ASST | 7 cut(s) | 16, 54, 96, 204, 231, 323, 397 |
| SmlI | CTYRAG | 1 cut(s) | 230 |
| SmoI | CTYRAG | 1 cut(s) | 230 |
| Sse9I | AATT | 4 cut(s) | 34, 250, 438, 482 |
| TaiI | ACGT | 1 cut(s) | 16 |
| TaqI | TCGA | 4 cut(s) | 30, 90, 364, 416 |
| TasI | AATT | 4 cut(s) | 34, 250, 438, 482 |
| Tru1I | TTAA | 2 cut(s) | 323, 354 |
| Tru9I | TTAA | 2 cut(s) | 323, 354 |
| TseI | GCWGC | 1 cut(s) | 94 |
| TspDTI | ATGAA | 1 cut(s) | 244 |
| XapI | RAATTY | 1 cut(s) | 250 |