Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006540

Physical Location & Seq

Genomic Coordinates Reverse (-)

53746817 .. 53747316

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAGGGAATCCCAATTGGCAGAAAAGTGAATCTGTTTGCTCATGATGGTTATGATGCTTTAATCACATCTCTGAGCCTCATGTTCAAGATCACCATTCTATGTCCTGATCAAGTTTATTCAGAGAAAAATTATGTGTTAACTTACGAAGATCAAGAAGGGGATTGGATGCTGGTTGGAGATGTGCCTTGGGAGATATTCTTGACTAGTGTGAAAAAATTGATGATCACTAGAGTGGACAGATGTGGAAGCAGCTGGAATACTCCGAGAGAGAAAGTGGCAACCAAGGACCGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

99

Amino Acids

11.45

Weight (kDa)

5.76

Isoelectric Point (pI)

20.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	1 - 78	2.2e-23	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17600
fragaria_vesca	FvH4_4g21780
malus_domestica	MD13G1137000.v1.1 MD16G1132500.v1.1
prunus_persica	Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1
pyrus_communis	pycom16g11680
rosa_chinensis	RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791
rosa_laevigata	RLG00000007125 RLG00000007191
rosa_multiflora	Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369680 Rroxscaffold_5G00370470
rosa_rugosa	Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000
rosa_samantha	Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900
rosa_wichuraiana	Rw4G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	88
AhlI	ACTAGT	1 cut(s)	206
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	1 cut(s)	41
BclI	TGATCA	2 cut(s)	109, 225
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	2 cut(s)	207, 231
BisI	GCNGC	1 cut(s)	253
BlsI	GCNGC	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmsI	GCATC	2 cut(s)	46, 159
BsaJI	CCNNGG	2 cut(s)	188, 285
BseDI	CCNNGG	2 cut(s)	188, 285
BseGI	GGATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	90, 109, 151, 225
BspCNI	CTCAG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	188, 285
BssMI	GATC	4 cut(s)	90, 109, 151, 225
BssT1I	CCWWGG	2 cut(s)	188, 285
Bst4CI	ACNGT	1 cut(s)	293
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	4 cut(s)	93, 112, 154, 228
BstMBI	GATC	4 cut(s)	90, 109, 151, 225
BstV1I	GCAGC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	174
CciI	TCATGA	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	289
CviAII	CATG	2 cut(s)	44, 82
CviJI	RGCY	2 cut(s)	78, 255
CviKI_1	RGCY	2 cut(s)	78, 255
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	4 cut(s)	92, 111, 153, 227
DpnII	GATC	4 cut(s)	90, 109, 151, 225
Eco130I	CCWWGG	2 cut(s)	188, 285
Eco47I	GGWCC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	188, 285
ErhI	CCWWGG	2 cut(s)	188, 285
FaeI	CATG	2 cut(s)	47, 85
FaiI	YATR	5 cut(s)	45, 54, 83, 103, 135
FatI	CATG	2 cut(s)	43, 81
FbaI	TGATCA	2 cut(s)	109, 225
Fnu4HI	GCNGC	1 cut(s)	253
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	253
FspBI	CTAG	2 cut(s)	207, 231
GluI	GCNGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	47, 85
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	9, 31
HpaI	GTTAAC	1 cut(s)	141
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	141, 238
Hpy188I	TCNGA	3 cut(s)	75, 124, 267
Hpy188III	TCNNGA	5 cut(s)	44, 88, 107, 155, 202
Hpy8I	GTNNAC	2 cut(s)	141, 238
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	47, 85
Ksp22I	TGATCA	2 cut(s)	109, 225
KspAI	GTTAAC	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	90, 109, 151, 225
LpnPI	CCDG	3 cut(s)	120, 158, 241
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	2 cut(s)	46, 159
MaeI	CTAG	2 cut(s)	207, 231
MalI	GATC	4 cut(s)	92, 111, 153, 227
MboI	GATC	4 cut(s)	90, 109, 151, 225
MboII	GAAGA	1 cut(s)	161
MfeI	CAATTG	1 cut(s)	15
MluCI	AATT	3 cut(s)	15, 130, 218
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	1 cut(s)	89
MseI	TTAA	2 cut(s)	62, 140
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	15
NdeII	GATC	4 cut(s)	90, 109, 151, 225
NlaIII	CATG	2 cut(s)	47, 85
OliI	CACNNNNGTG	1 cut(s)	233
PagI	TCATGA	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	9, 31
PkrI	GCNGC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	62, 140
SatI	GCNGC	1 cut(s)	253
Sau3AI	GATC	4 cut(s)	90, 109, 151, 225
Sau96I	GGNCC	1 cut(s)	289
SetI	ASST	1 cut(s)	257
SfaNI	GCATC	2 cut(s)	46, 159
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	233
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	3 cut(s)	15, 130, 218
SspMI	CTAG	2 cut(s)	207, 231
StyI	CCWWGG	2 cut(s)	188, 285
TaaI	ACNGT	1 cut(s)	293
TasI	AATT	3 cut(s)	15, 130, 218
TfiI	GAWTC	2 cut(s)	9, 31
Tru1I	TTAA	2 cut(s)	62, 140
Tru9I	TTAA	2 cut(s)	62, 140
TseI	GCWGC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	289
XspI	CTAG	2 cut(s)	207, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.