Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17600 |
| fragaria_vesca | FvH4_4g21780 |
| malus_domestica | MD13G1137000.v1.1 MD16G1132500.v1.1 |
| prunus_persica | Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1 |
| pyrus_communis | pycom16g11680 |
| rosa_chinensis | RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791 |
| rosa_laevigata | RLG00000007125 RLG00000007191 |
| rosa_multiflora | Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00369680 Rroxscaffold_5G00370470 |
| rosa_rugosa | Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000 |
| rosa_samantha | Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900 |
| rosa_wichuraiana | Rw4G024210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 526, 760 |
| AccB1I | GGYRCC | 1 cut(s) | 369 |
| AccII | CGCG | 1 cut(s) | 486 |
| AciI | CCGC | 3 cut(s) | 182, 273, 486 |
| AclWI | GGATC | 2 cut(s) | 428, 677 |
| AcoI | YGGCCR | 1 cut(s) | 490 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 242 |
| AgsI | TTSAA | 3 cut(s) | 667, 878, 957 |
| AjnI | CCWGG | 1 cut(s) | 543 |
| AluBI | AGCT | 5 cut(s) | 17, 66, 111, 468, 717 |
| AluI | AGCT | 5 cut(s) | 17, 66, 111, 468, 717 |
| AlwI | GGATC | 2 cut(s) | 428, 677 |
| Ama87I | CYCGRG | 1 cut(s) | 686 |
| AoxI | GGCC | 1 cut(s) | 490 |
| ApeKI | GCWGC | 7 cut(s) | 111, 145, 277, 316, 385, 568, 717 |
| AspLEI | GCGC | 2 cut(s) | 527, 761 |
| AspS9I | GGNCC | 1 cut(s) | 829 |
| AsuC2I | CCSGG | 1 cut(s) | 243 |
| AvaI | CYCGRG | 1 cut(s) | 686 |
| AvaII | GGWCC | 1 cut(s) | 829 |
| BalI | TGGCCA | 1 cut(s) | 492 |
| BanI | GGYRCC | 1 cut(s) | 369 |
| BbvI | GCAGC | 7 cut(s) | 98, 157, 289, 328, 397, 580, 704 |
| BccI | CCATC | 2 cut(s) | 56, 172 |
| BceAI | ACGGC | 1 cut(s) | 732 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 118, 152, 242, 276 |
| BciT130I | CCWGG | 1 cut(s) | 545 |
| BcnI | CCSGG | 1 cut(s) | 243 |
| BfaI | CTAG | 1 cut(s) | 477 |
| BglII | AGATCT | 1 cut(s) | 558 |
| BisI | GCNGC | 7 cut(s) | 112, 146, 278, 317, 386, 569, 718 |
| BlsI | GCNGC | 7 cut(s) | 113, 147, 279, 318, 387, 570, 719 |
| Bme1390I | CCNGG | 2 cut(s) | 243, 545 |
| Bme18I | GGWCC | 1 cut(s) | 829 |
| BmeT110I | CYCGRG | 1 cut(s) | 686 |
| BmgT120I | GGNCC | 1 cut(s) | 829 |
| BmiI | GGNNCC | 2 cut(s) | 371, 830 |
| BmrFI | CCNGG | 2 cut(s) | 243, 545 |
| BpuEI | CTTGAG | 2 cut(s) | 66, 719 |
| BpuMI | CCSGG | 1 cut(s) | 243 |
| BsaJI | CCNNGG | 3 cut(s) | 128, 241, 425 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 242 |
| Bse118I | RCCGGY | 2 cut(s) | 669, 831 |
| Bse3DI | GCAATG | 5 cut(s) | 104, 461, 616, 710, 847 |
| BseBI | CCWGG | 1 cut(s) | 545 |
| BseDI | CCNNGG | 3 cut(s) | 128, 241, 425 |
| BseGI | GGATG | 1 cut(s) | 79 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 242 |
| BseMI | GCAATG | 5 cut(s) | 104, 461, 616, 710, 847 |
| BseMII | CTCAG | 2 cut(s) | 185, 203 |
| BseRI | GAGGAG | 1 cut(s) | 229 |
| BseXI | GCAGC | 7 cut(s) | 98, 157, 289, 328, 397, 580, 704 |
| Bsh1236I | CGCG | 1 cut(s) | 486 |
| BshFI | GGCC | 1 cut(s) | 492 |
| BshNI | GGYRCC | 1 cut(s) | 369 |
| BsiHKCI | CYCGRG | 1 cut(s) | 686 |
| BsiSI | CCGG | 3 cut(s) | 243, 670, 832 |
| BslFI | GGGAC | 1 cut(s) | 842 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 242 |
| BsmFI | GGGAC | 1 cut(s) | 842 |
| BsmI | GAATGC | 1 cut(s) | 167 |
| BsnI | GGCC | 1 cut(s) | 492 |
| BsoBI | CYCGRG | 1 cut(s) | 686 |
| Bsp143I | GATC | 3 cut(s) | 433, 558, 682 |
| BspACI | CCGC | 3 cut(s) | 182, 273, 486 |
| BspANI | GGCC | 1 cut(s) | 492 |
| BspCNI | CTCAG | 2 cut(s) | 186, 204 |
| BspFNI | CGCG | 1 cut(s) | 486 |
| BspLI | GGNNCC | 2 cut(s) | 371, 830 |
| BspPI | GGATC | 2 cut(s) | 428, 677 |
| BspT107I | GGYRCC | 1 cut(s) | 369 |
| BsrDI | GCAATG | 5 cut(s) | 104, 461, 616, 710, 847 |
| BsrFI | RCCGGY | 2 cut(s) | 669, 831 |
| BssAI | RCCGGY | 2 cut(s) | 669, 831 |
| BssECI | CCNNGG | 3 cut(s) | 128, 241, 425 |
| BssMI | GATC | 3 cut(s) | 433, 558, 682 |
| BssT1I | CCWWGG | 1 cut(s) | 425 |
| Bst2UI | CCWGG | 1 cut(s) | 545 |
| Bst4CI | ACNGT | 2 cut(s) | 357, 756 |
| Bst6I | CTCTTC | 1 cut(s) | 41 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 124 |
| BstDEI | CTNAG | 3 cut(s) | 62, 194, 212 |
| BstF5I | GGATG | 1 cut(s) | 79 |
| BstFNI | CGCG | 1 cut(s) | 486 |
| BstHHI | GCGC | 2 cut(s) | 527, 761 |
| BstKTI | GATC | 3 cut(s) | 436, 561, 685 |
| BstMBI | GATC | 3 cut(s) | 433, 558, 682 |
| BstNI | CCWGG | 1 cut(s) | 545 |
| BstNSI | RCATGY | 1 cut(s) | 913 |
| BstSCI | CCNGG | 2 cut(s) | 241, 543 |
| BstUI | CGCG | 1 cut(s) | 486 |
| BstV1I | GCAGC | 7 cut(s) | 98, 157, 289, 328, 397, 580, 704 |
| BstX2I | RGATCY | 3 cut(s) | 433, 558, 682 |
| BstYI | RGATCY | 3 cut(s) | 433, 558, 682 |
| BsuRI | GGCC | 1 cut(s) | 492 |
| BtsCI | GGATG | 1 cut(s) | 79 |
| BtsI | GCAGTG | 2 cut(s) | 155, 527 |
| BtsIMutI | CAGTG | 3 cut(s) | 155, 527, 761 |
| CfoI | GCGC | 2 cut(s) | 527, 761 |
| Cfr10I | RCCGGY | 2 cut(s) | 669, 831 |
| Cfr13I | GGNCC | 1 cut(s) | 829 |
| CseI | GACGC | 2 cut(s) | 287, 539 |
| CviAII | CATG | 1 cut(s) | 910 |
| DdeI | CTNAG | 3 cut(s) | 62, 194, 212 |
| DpnI | GATC | 3 cut(s) | 435, 560, 684 |
| DpnII | GATC | 3 cut(s) | 433, 558, 682 |
| EaeI | YGGCCR | 1 cut(s) | 490 |
| Eam1104I | CTCTTC | 1 cut(s) | 41 |
| EarI | CTCTTC | 1 cut(s) | 41 |
| EciI | GGCGGA | 1 cut(s) | 197 |
| Eco130I | CCWWGG | 1 cut(s) | 425 |
| Eco47I | GGWCC | 1 cut(s) | 829 |
| Eco88I | CYCGRG | 1 cut(s) | 686 |
| EcoRII | CCWGG | 1 cut(s) | 543 |
| EcoT14I | CCWWGG | 1 cut(s) | 425 |
| ErhI | CCWWGG | 1 cut(s) | 425 |
| FaeI | CATG | 1 cut(s) | 913 |
| FaiI | YATR | 4 cut(s) | 69, 201, 310, 911 |
| FaqI | GGGAC | 1 cut(s) | 842 |
| FatI | CATG | 1 cut(s) | 909 |
| FauI | CCCGC | 1 cut(s) | 266 |
| Fnu4HI | GCNGC | 7 cut(s) | 112, 146, 278, 317, 386, 569, 718 |
| FokI | GGATG | 1 cut(s) | 86 |
| Fsp4HI | GCNGC | 7 cut(s) | 112, 146, 278, 317, 386, 569, 718 |
| FspAI | RTGCGCAY | 2 cut(s) | 526, 760 |
| FspBI | CTAG | 1 cut(s) | 477 |
| FspI | TGCGCA | 2 cut(s) | 526, 760 |
| GlaI | GCGC | 2 cut(s) | 526, 760 |
| GluI | GCNGC | 7 cut(s) | 112, 146, 278, 317, 386, 569, 718 |
| HaeIII | GGCC | 1 cut(s) | 492 |
| HapII | CCGG | 3 cut(s) | 243, 670, 832 |
| HgaI | GACGC | 2 cut(s) | 287, 539 |
| HhaI | GCGC | 2 cut(s) | 527, 761 |
| Hin1II | CATG | 1 cut(s) | 913 |
| Hin6I | GCGC | 2 cut(s) | 525, 759 |
| HinP1I | GCGC | 2 cut(s) | 525, 759 |
| HincII | GTYRAC | 3 cut(s) | 266, 302, 752 |
| HindII | GTYRAC | 3 cut(s) | 266, 302, 752 |
| HindIII | AAGCTT | 1 cut(s) | 15 |
| HpaII | CCGG | 3 cut(s) | 243, 670, 832 |
| Hpy166II | GTNNAC | 3 cut(s) | 266, 302, 752 |
| Hpy188I | TCNGA | 3 cut(s) | 213, 579, 939 |
| Hpy188III | TCNNGA | 4 cut(s) | 83, 437, 678, 686 |
| Hpy8I | GTNNAC | 3 cut(s) | 266, 302, 752 |
| Hpy99I | CGWCG | 1 cut(s) | 789 |
| HpyAV | CCTTC | 2 cut(s) | 621, 852 |
| HpyCH4III | ACNGT | 2 cut(s) | 357, 756 |
| HpyCH4IV | ACGT | 1 cut(s) | 784 |
| HpyCH4V | TGCA | 2 cut(s) | 139, 385 |
| HpyF3I | CTNAG | 3 cut(s) | 62, 194, 212 |
| HpySE526I | ACGT | 1 cut(s) | 784 |
| Hsp92II | CATG | 1 cut(s) | 913 |
| HspAI | GCGC | 2 cut(s) | 525, 759 |
| Kzo9I | GATC | 3 cut(s) | 433, 558, 682 |
| LmnI | GCTCC | 2 cut(s) | 184, 547 |
| Lsp1109I | GCAGC | 7 cut(s) | 98, 157, 289, 328, 397, 580, 704 |
| MaeI | CTAG | 1 cut(s) | 477 |
| MaeII | ACGT | 1 cut(s) | 784 |
| MalI | GATC | 3 cut(s) | 435, 560, 684 |
| MboI | GATC | 3 cut(s) | 433, 558, 682 |
| MboII | GAAGA | 2 cut(s) | 28, 945 |
| MfeI | CAATTG | 3 cut(s) | 380, 533, 767 |
| MflI | RGATCY | 3 cut(s) | 433, 558, 682 |
| MlsI | TGGCCA | 1 cut(s) | 492 |
| MluCI | AATT | 6 cut(s) | 380, 446, 533, 767, 902, 917 |
| MluNI | TGGCCA | 1 cut(s) | 492 |
| Mox20I | TGGCCA | 1 cut(s) | 492 |
| MscI | TGGCCA | 1 cut(s) | 492 |
| MseI | TTAA | 1 cut(s) | 920 |
| Msp20I | TGGCCA | 1 cut(s) | 492 |
| MspI | CCGG | 3 cut(s) | 243, 670, 832 |
| MspR9I | CCNGG | 2 cut(s) | 243, 545 |
| MunI | CAATTG | 3 cut(s) | 380, 533, 767 |
| Mva1269I | GAATGC | 1 cut(s) | 167 |
| MvaI | CCWGG | 1 cut(s) | 545 |
| MvnI | CGCG | 1 cut(s) | 486 |
| NciI | CCSGG | 1 cut(s) | 243 |
| NdeII | GATC | 3 cut(s) | 433, 558, 682 |
| NlaIII | CATG | 1 cut(s) | 913 |
| NlaIV | GGNNCC | 2 cut(s) | 371, 830 |
| NmeAIII | GCCGAG | 2 cut(s) | 153, 191 |
| NsbI | TGCGCA | 2 cut(s) | 526, 760 |
| NspI | RCATGY | 1 cut(s) | 913 |
| PctI | GAATGC | 1 cut(s) | 167 |
| PkrI | GCNGC | 7 cut(s) | 113, 147, 279, 318, 387, 570, 719 |
| Psp6I | CCWGG | 1 cut(s) | 543 |
| PspGI | CCWGG | 1 cut(s) | 543 |
| PspN4I | GGNNCC | 2 cut(s) | 371, 830 |
| PspPI | GGNCC | 1 cut(s) | 829 |
| PsuI | RGATCY | 3 cut(s) | 433, 558, 682 |
| SaqAI | TTAA | 1 cut(s) | 920 |
| SatI | GCNGC | 7 cut(s) | 112, 146, 278, 317, 386, 569, 718 |
| Sau3AI | GATC | 3 cut(s) | 433, 558, 682 |
| Sau96I | GGNCC | 1 cut(s) | 829 |
| ScrFI | CCNGG | 2 cut(s) | 243, 545 |
| SinI | GGWCC | 1 cut(s) | 829 |
| SmlI | CTYRAG | 2 cut(s) | 81, 698 |
| SmoI | CTYRAG | 2 cut(s) | 81, 698 |
| Sse9I | AATT | 6 cut(s) | 380, 446, 533, 767, 902, 917 |
| SsiI | CCGC | 3 cut(s) | 182, 273, 486 |
| SspMI | CTAG | 1 cut(s) | 477 |
| StyD4I | CCNGG | 2 cut(s) | 241, 543 |
| StyI | CCWWGG | 1 cut(s) | 425 |
| TaaI | ACNGT | 2 cut(s) | 357, 756 |
| TaiI | ACGT | 1 cut(s) | 787 |
| TaqI | TCGA | 1 cut(s) | 402 |
| TasI | AATT | 6 cut(s) | 380, 446, 533, 767, 902, 917 |
| Tru1I | TTAA | 1 cut(s) | 920 |
| Tru9I | TTAA | 1 cut(s) | 920 |
| TscAI | CASTG | 3 cut(s) | 155, 527, 761 |
| TseI | GCWGC | 7 cut(s) | 111, 145, 277, 316, 385, 568, 717 |
| TspDTI | ATGAA | 1 cut(s) | 13 |
| TspRI | CASTG | 3 cut(s) | 155, 527, 761 |
| VpaK11BI | GGWCC | 1 cut(s) | 829 |
| XceI | RCATGY | 1 cut(s) | 913 |
| XspI | CTAG | 1 cut(s) | 477 |