Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17600 |
| fragaria_vesca | FvH4_4g21780 |
| malus_domestica | MD13G1137000.v1.1 MD16G1132500.v1.1 |
| prunus_persica | Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1 |
| pyrus_communis | pycom16g11680 |
| rosa_chinensis | RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791 |
| rosa_laevigata | RLG00000007125 RLG00000007191 |
| rosa_multiflora | Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00369680 Rroxscaffold_5G00370470 |
| rosa_rugosa | Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000 |
| rosa_samantha | Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900 |
| rosa_wichuraiana | Rw4G024210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 288 |
| AccI | GTMKAC | 1 cut(s) | 183 |
| AcoI | YGGCCR | 1 cut(s) | 61 |
| AcsI | RAATTY | 1 cut(s) | 160 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 288 |
| AgsI | TTSAA | 2 cut(s) | 96, 274 |
| AhlI | ACTAGT | 1 cut(s) | 392 |
| AjnI | CCWGG | 1 cut(s) | 130 |
| AluBI | AGCT | 1 cut(s) | 441 |
| AluI | AGCT | 1 cut(s) | 441 |
| Alw21I | GWGCWC | 2 cut(s) | 47, 125 |
| Alw44I | GTGCAC | 1 cut(s) | 43 |
| AoxI | GGCC | 3 cut(s) | 32, 61, 290 |
| ApaLI | GTGCAC | 1 cut(s) | 43 |
| ApeKI | GCWGC | 1 cut(s) | 438 |
| ApoI | RAATTY | 1 cut(s) | 160 |
| AspS9I | GGNCC | 1 cut(s) | 475 |
| AsuHPI | GGTGA | 2 cut(s) | 66, 271 |
| AvaII | GGWCC | 1 cut(s) | 475 |
| BaeGI | GKGCMC | 1 cut(s) | 47 |
| Bbv12I | GWGCWC | 2 cut(s) | 47, 125 |
| BbvI | GCAGC | 1 cut(s) | 450 |
| BccI | CCATC | 2 cut(s) | 159, 227 |
| BciT130I | CCWGG | 1 cut(s) | 132 |
| BclI | TGATCA | 3 cut(s) | 249, 295, 411 |
| BcuI | ACTAGT | 1 cut(s) | 392 |
| BfaI | CTAG | 3 cut(s) | 36, 393, 417 |
| BisI | GCNGC | 1 cut(s) | 439 |
| BlsI | GCNGC | 1 cut(s) | 440 |
| Bme1390I | CCNGG | 1 cut(s) | 132 |
| Bme18I | GGWCC | 1 cut(s) | 475 |
| BmgT120I | GGNCC | 1 cut(s) | 475 |
| BmrFI | CCNGG | 1 cut(s) | 132 |
| BmsI | GCATC | 3 cut(s) | 78, 232, 345 |
| BsaJI | CCNNGG | 4 cut(s) | 101, 131, 374, 471 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 66, 96 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 288 |
| BseBI | CCWGG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 4 cut(s) | 101, 131, 374, 471 |
| BseGI | GGATG | 2 cut(s) | 11, 360 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 288 |
| BseMII | CTCAG | 1 cut(s) | 251 |
| BseRI | GAGGAG | 2 cut(s) | 74, 133 |
| BseSI | GKGCMC | 1 cut(s) | 47 |
| BseXI | GCAGC | 1 cut(s) | 450 |
| BshFI | GGCC | 3 cut(s) | 34, 63, 292 |
| BsiHKAI | GWGCWC | 2 cut(s) | 47, 125 |
| BsiSI | CCGG | 1 cut(s) | 64 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 288 |
| BsnI | GGCC | 3 cut(s) | 34, 63, 292 |
| Bsp1286I | GDGCHC | 2 cut(s) | 47, 125 |
| Bsp143I | GATC | 6 cut(s) | 49, 249, 276, 295, 337, 411 |
| BspANI | GGCC | 3 cut(s) | 34, 63, 292 |
| BspCNI | CTCAG | 1 cut(s) | 252 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BssECI | CCNNGG | 4 cut(s) | 101, 131, 374, 471 |
| BssMI | GATC | 6 cut(s) | 49, 249, 276, 295, 337, 411 |
| BssT1I | CCWWGG | 3 cut(s) | 101, 374, 471 |
| Bst2UI | CCWGG | 1 cut(s) | 132 |
| Bst4CI | ACNGT | 1 cut(s) | 479 |
| BstDEI | CTNAG | 1 cut(s) | 260 |
| BstF5I | GGATG | 2 cut(s) | 11, 360 |
| BstKTI | GATC | 6 cut(s) | 52, 252, 279, 298, 340, 414 |
| BstMBI | GATC | 6 cut(s) | 49, 249, 276, 295, 337, 411 |
| BstNI | CCWGG | 1 cut(s) | 132 |
| BstSCI | CCNGG | 1 cut(s) | 130 |
| BstSLI | GKGCMC | 1 cut(s) | 47 |
| BstV1I | GCAGC | 1 cut(s) | 450 |
| BsuRI | GGCC | 3 cut(s) | 34, 63, 292 |
| BtsCI | GGATG | 2 cut(s) | 11, 360 |
| BtsIMutI | CAGTG | 1 cut(s) | 45 |
| CciI | TCATGA | 1 cut(s) | 229 |
| Cfr13I | GGNCC | 1 cut(s) | 475 |
| CviAII | CATG | 4 cut(s) | 187, 230, 268, 320 |
| CviJI | RGCY | 7 cut(s) | 34, 63, 100, 264, 292, 441, 467 |
| CviKI_1 | RGCY | 7 cut(s) | 34, 63, 100, 264, 292, 441, 467 |
| DdeI | CTNAG | 1 cut(s) | 260 |
| DpnI | GATC | 6 cut(s) | 51, 251, 278, 297, 339, 413 |
| DpnII | GATC | 6 cut(s) | 49, 249, 276, 295, 337, 411 |
| EaeI | YGGCCR | 1 cut(s) | 61 |
| Eco130I | CCWWGG | 3 cut(s) | 101, 374, 471 |
| Eco47I | GGWCC | 1 cut(s) | 475 |
| EcoRII | CCWGG | 1 cut(s) | 130 |
| EcoT14I | CCWWGG | 3 cut(s) | 101, 374, 471 |
| ErhI | CCWWGG | 3 cut(s) | 101, 374, 471 |
| FaeI | CATG | 4 cut(s) | 190, 233, 271, 323 |
| FaiI | YATR | 6 cut(s) | 188, 231, 240, 269, 289, 321 |
| FatI | CATG | 4 cut(s) | 186, 229, 267, 319 |
| FbaI | TGATCA | 3 cut(s) | 249, 295, 411 |
| FblI | GTMKAC | 1 cut(s) | 183 |
| Fnu4HI | GCNGC | 1 cut(s) | 439 |
| FokI | GGATG | 1 cut(s) | 367 |
| Fsp4HI | GCNGC | 1 cut(s) | 439 |
| FspBI | CTAG | 3 cut(s) | 36, 393, 417 |
| GluI | GCNGC | 1 cut(s) | 439 |
| HaeIII | GGCC | 3 cut(s) | 34, 63, 292 |
| HapII | CCGG | 1 cut(s) | 64 |
| Hin1II | CATG | 4 cut(s) | 190, 233, 271, 323 |
| HincII | GTYRAC | 1 cut(s) | 327 |
| HindII | GTYRAC | 1 cut(s) | 327 |
| HinfI | GANTC | 2 cut(s) | 195, 217 |
| HpaI | GTTAAC | 1 cut(s) | 327 |
| HpaII | CCGG | 1 cut(s) | 64 |
| HphI | GGTGA | 2 cut(s) | 66, 271 |
| Hpy166II | GTNNAC | 3 cut(s) | 45, 184, 327 |
| Hpy188I | TCNGA | 3 cut(s) | 261, 310, 453 |
| Hpy188III | TCNNGA | 5 cut(s) | 15, 230, 274, 341, 388 |
| Hpy8I | GTNNAC | 3 cut(s) | 45, 184, 327 |
| Hpy99I | CGWCG | 1 cut(s) | 483 |
| HpyAV | CCTTC | 2 cut(s) | 87, 338 |
| HpyCH4III | ACNGT | 1 cut(s) | 479 |
| HpyCH4V | TGCA | 1 cut(s) | 45 |
| HpyF3I | CTNAG | 1 cut(s) | 260 |
| Hsp92II | CATG | 4 cut(s) | 190, 233, 271, 323 |
| Ksp22I | TGATCA | 3 cut(s) | 249, 295, 411 |
| KspAI | GTTAAC | 1 cut(s) | 327 |
| Kzo9I | GATC | 6 cut(s) | 49, 249, 276, 295, 337, 411 |
| LmnI | GCTCC | 2 cut(s) | 66, 120 |
| LpnPI | CCDG | 7 cut(s) | 28, 77, 117, 144, 306, 344, 427 |
| Lsp1109I | GCAGC | 1 cut(s) | 450 |
| LweI | GCATC | 3 cut(s) | 78, 232, 345 |
| MaeI | CTAG | 3 cut(s) | 36, 393, 417 |
| MalI | GATC | 6 cut(s) | 51, 251, 278, 297, 339, 413 |
| MboI | GATC | 6 cut(s) | 49, 249, 276, 295, 337, 411 |
| MboII | GAAGA | 3 cut(s) | 119, 156, 347 |
| MfeI | CAATTG | 1 cut(s) | 201 |
| MhlI | GDGCHC | 2 cut(s) | 47, 125 |
| MluCI | AATT | 2 cut(s) | 160, 201 |
| MmeI | TCCRAC | 1 cut(s) | 343 |
| MnlI | CCTC | 4 cut(s) | 95, 111, 184, 275 |
| MseI | TTAA | 2 cut(s) | 326, 484 |
| MspA1I | CMGCKG | 1 cut(s) | 441 |
| MspI | CCGG | 1 cut(s) | 64 |
| MspR9I | CCNGG | 1 cut(s) | 132 |
| MunI | CAATTG | 1 cut(s) | 201 |
| MvaI | CCWGG | 1 cut(s) | 132 |
| NdeII | GATC | 6 cut(s) | 49, 249, 276, 295, 337, 411 |
| NlaIII | CATG | 4 cut(s) | 190, 233, 271, 323 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PfeI | GAWTC | 2 cut(s) | 195, 217 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 288 |
| PkrI | GCNGC | 1 cut(s) | 440 |
| Psp6I | CCWGG | 1 cut(s) | 130 |
| PspGI | CCWGG | 1 cut(s) | 130 |
| PspPI | GGNCC | 1 cut(s) | 475 |
| PvuII | CAGCTG | 1 cut(s) | 441 |
| SaqAI | TTAA | 2 cut(s) | 326, 484 |
| SatI | GCNGC | 1 cut(s) | 439 |
| Sau3AI | GATC | 6 cut(s) | 49, 249, 276, 295, 337, 411 |
| Sau96I | GGNCC | 1 cut(s) | 475 |
| ScrFI | CCNGG | 1 cut(s) | 132 |
| SduI | GDGCHC | 2 cut(s) | 47, 125 |
| SetI | ASST | 3 cut(s) | 79, 183, 443 |
| SfaNI | GCATC | 3 cut(s) | 78, 232, 345 |
| SinI | GGWCC | 1 cut(s) | 475 |
| SpeI | ACTAGT | 1 cut(s) | 392 |
| Sse9I | AATT | 2 cut(s) | 160, 201 |
| SspMI | CTAG | 3 cut(s) | 36, 393, 417 |
| StyD4I | CCNGG | 1 cut(s) | 130 |
| StyI | CCWWGG | 3 cut(s) | 101, 374, 471 |
| TaaI | ACNGT | 1 cut(s) | 479 |
| TasI | AATT | 2 cut(s) | 160, 201 |
| TfiI | GAWTC | 2 cut(s) | 195, 217 |
| Tru1I | TTAA | 2 cut(s) | 326, 484 |
| Tru9I | TTAA | 2 cut(s) | 326, 484 |
| TscAI | CASTG | 1 cut(s) | 52 |
| TseI | GCWGC | 1 cut(s) | 438 |
| TspRI | CASTG | 1 cut(s) | 52 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 288 |
| VneI | GTGCAC | 1 cut(s) | 43 |
| VpaK11BI | GGWCC | 1 cut(s) | 475 |
| XapI | RAATTY | 1 cut(s) | 160 |
| XmiI | GTMKAC | 1 cut(s) | 183 |
| XspI | CTAG | 3 cut(s) | 36, 393, 417 |