Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G17600 |
| fragaria_vesca | FvH4_4g21780 |
| malus_domestica | MD13G1137000.v1.1 MD16G1132500.v1.1 |
| prunus_persica | Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1 |
| pyrus_communis | pycom16g11680 |
| rosa_chinensis | RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791 |
| rosa_laevigata | RLG00000007125 RLG00000007191 |
| rosa_multiflora | Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00369680 Rroxscaffold_5G00370470 |
| rosa_rugosa | Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000 |
| rosa_samantha | Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900 |
| rosa_wichuraiana | Rw4G024210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 327 |
| AcoI | YGGCCR | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 235 |
| AgsI | TTSAA | 4 cut(s) | 33, 225, 418, 562 |
| AjnI | CCWGG | 1 cut(s) | 229 |
| AluBI | AGCT | 1 cut(s) | 11 |
| AluI | AGCT | 1 cut(s) | 11 |
| Alw21I | GWGCWC | 1 cut(s) | 164 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 440 |
| AoxI | GGCC | 3 cut(s) | 178, 254, 420 |
| ApeKI | GCWGC | 4 cut(s) | 11, 42, 45, 386 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 339 |
| AspS9I | GGNCC | 1 cut(s) | 437 |
| AsuHPI | GGTGA | 1 cut(s) | 559 |
| AvaII | GGWCC | 1 cut(s) | 437 |
| AxyI | CCTNAGG | 1 cut(s) | 441 |
| BalI | TGGCCA | 1 cut(s) | 256 |
| BbsI | GAAGAC | 1 cut(s) | 207 |
| Bbv12I | GWGCWC | 1 cut(s) | 164 |
| BbvCI | CCTCAGC | 1 cut(s) | 182 |
| BbvI | GCAGC | 3 cut(s) | 54, 57, 373 |
| BccI | CCATC | 3 cut(s) | 57, 312, 371 |
| BciT130I | CCWGG | 1 cut(s) | 231 |
| BfaI | CTAG | 1 cut(s) | 198 |
| BisI | GCNGC | 4 cut(s) | 12, 43, 46, 387 |
| BlsI | GCNGC | 4 cut(s) | 13, 44, 47, 388 |
| Bme1390I | CCNGG | 1 cut(s) | 231 |
| Bme18I | GGWCC | 1 cut(s) | 437 |
| BmgT120I | GGNCC | 1 cut(s) | 437 |
| BmrFI | CCNGG | 1 cut(s) | 231 |
| BmsI | GCATC | 2 cut(s) | 195, 498 |
| BpiI | GAAGAC | 1 cut(s) | 207 |
| Bpu10I | CCTNAGC | 1 cut(s) | 182 |
| BpuEI | CTTGAG | 1 cut(s) | 295 |
| BsaJI | CCNNGG | 3 cut(s) | 229, 230, 527 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 293, 323 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 235 |
| Bse1I | ACTGG | 1 cut(s) | 257 |
| Bse21I | CCTNAGG | 1 cut(s) | 441 |
| BseBI | CCWGG | 1 cut(s) | 231 |
| BseDI | CCNNGG | 3 cut(s) | 229, 230, 527 |
| BseGI | GGATG | 3 cut(s) | 49, 304, 513 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BseMII | CTCAG | 3 cut(s) | 119, 196, 432 |
| BseNI | ACTGG | 1 cut(s) | 257 |
| BseRI | GAGGAG | 1 cut(s) | 292 |
| BseXI | GCAGC | 3 cut(s) | 54, 57, 373 |
| BshFI | GGCC | 3 cut(s) | 180, 256, 422 |
| BsiHKAI | GWGCWC | 1 cut(s) | 164 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 235 |
| BsmI | GAATGC | 1 cut(s) | 339 |
| BsnI | GGCC | 3 cut(s) | 180, 256, 422 |
| Bsp1286I | GDGCHC | 1 cut(s) | 164 |
| Bsp143I | GATC | 4 cut(s) | 55, 166, 490, 564 |
| BspANI | GGCC | 3 cut(s) | 180, 256, 422 |
| BspCNI | CTCAG | 3 cut(s) | 118, 195, 433 |
| BsrI | ACTGG | 1 cut(s) | 257 |
| BssECI | CCNNGG | 3 cut(s) | 229, 230, 527 |
| BssMI | GATC | 4 cut(s) | 55, 166, 490, 564 |
| BssT1I | CCWWGG | 1 cut(s) | 527 |
| Bst2UI | CCWGG | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 3 cut(s) | 134, 206, 550 |
| BstC8I | GCNNGC | 2 cut(s) | 75, 79 |
| BstDEI | CTNAG | 5 cut(s) | 105, 170, 182, 404, 441 |
| BstF5I | GGATG | 3 cut(s) | 49, 304, 513 |
| BstKTI | GATC | 4 cut(s) | 58, 169, 493, 567 |
| BstMBI | GATC | 4 cut(s) | 55, 166, 490, 564 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 296 |
| BstNI | CCWGG | 1 cut(s) | 231 |
| BstSCI | CCNGG | 1 cut(s) | 229 |
| BstV1I | GCAGC | 3 cut(s) | 54, 57, 373 |
| BstV2I | GAAGAC | 1 cut(s) | 207 |
| Bsu36I | CCTNAGG | 1 cut(s) | 441 |
| BsuRI | GGCC | 3 cut(s) | 180, 256, 422 |
| BtsCI | GGATG | 3 cut(s) | 49, 304, 513 |
| BtsIMutI | CAGTG | 3 cut(s) | 162, 211, 242 |
| Cac8I | GCNNGC | 2 cut(s) | 75, 79 |
| CaiI | CAGNNNCTG | 1 cut(s) | 440 |
| Cfr13I | GGNCC | 1 cut(s) | 437 |
| CviAII | CATG | 5 cut(s) | 331, 374, 412, 452, 473 |
| CviJI | RGCY | 8 cut(s) | 11, 48, 81, 180, 256, 381, 408, 422 |
| CviKI_1 | RGCY | 8 cut(s) | 11, 48, 81, 180, 256, 381, 408, 422 |
| DdeI | CTNAG | 5 cut(s) | 105, 170, 182, 404, 441 |
| DpnI | GATC | 4 cut(s) | 57, 168, 492, 566 |
| DpnII | GATC | 4 cut(s) | 55, 166, 490, 564 |
| EaeI | YGGCCR | 1 cut(s) | 254 |
| Eco130I | CCWWGG | 1 cut(s) | 527 |
| Eco47I | GGWCC | 1 cut(s) | 437 |
| Eco81I | CCTNAGG | 1 cut(s) | 441 |
| EcoO109I | RGGNCCY | 1 cut(s) | 437 |
| EcoRII | CCWGG | 1 cut(s) | 229 |
| EcoT14I | CCWWGG | 1 cut(s) | 527 |
| ErhI | CCWWGG | 1 cut(s) | 527 |
| FaeI | CATG | 5 cut(s) | 334, 377, 415, 455, 476 |
| FaiI | YATR | 9 cut(s) | 126, 138, 332, 375, 384, 413, 453, 474, 486 |
| FatI | CATG | 5 cut(s) | 330, 373, 411, 451, 472 |
| FblI | GTMKAC | 1 cut(s) | 327 |
| Fnu4HI | GCNGC | 4 cut(s) | 12, 43, 46, 387 |
| FokI | GGATG | 3 cut(s) | 36, 291, 520 |
| Fsp4HI | GCNGC | 4 cut(s) | 12, 43, 46, 387 |
| FspBI | CTAG | 1 cut(s) | 198 |
| GluI | GCNGC | 4 cut(s) | 12, 43, 46, 387 |
| HaeIII | GGCC | 3 cut(s) | 180, 256, 422 |
| Hin1II | CATG | 5 cut(s) | 334, 377, 415, 455, 476 |
| HinfI | GANTC | 1 cut(s) | 361 |
| HphI | GGTGA | 1 cut(s) | 559 |
| Hpy166II | GTNNAC | 1 cut(s) | 328 |
| Hpy188I | TCNGA | 2 cut(s) | 108, 463 |
| Hpy188III | TCNNGA | 5 cut(s) | 53, 274, 440, 494, 541 |
| Hpy8I | GTNNAC | 1 cut(s) | 328 |
| HpyAV | CCTTC | 3 cut(s) | 316, 329, 491 |
| HpyCH4III | ACNGT | 3 cut(s) | 134, 206, 550 |
| HpyCH4V | TGCA | 3 cut(s) | 14, 290, 371 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 296 |
| HpyF3I | CTNAG | 5 cut(s) | 105, 170, 182, 404, 441 |
| Hsp92II | CATG | 5 cut(s) | 334, 377, 415, 455, 476 |
| Kzo9I | GATC | 4 cut(s) | 55, 166, 490, 564 |
| LmnI | GCTCC | 1 cut(s) | 279 |
| Lsp1109I | GCAGC | 3 cut(s) | 54, 57, 373 |
| LweI | GCATC | 2 cut(s) | 195, 498 |
| MaeI | CTAG | 1 cut(s) | 198 |
| MaeIII | GTNAC | 3 cut(s) | 128, 200, 206 |
| MalI | GATC | 4 cut(s) | 57, 168, 492, 566 |
| MboI | GATC | 4 cut(s) | 55, 166, 490, 564 |
| MfeI | CAATTG | 1 cut(s) | 345 |
| MhlI | GDGCHC | 1 cut(s) | 164 |
| MlsI | TGGCCA | 1 cut(s) | 256 |
| MluCI | AATT | 2 cut(s) | 121, 345 |
| MluNI | TGGCCA | 1 cut(s) | 256 |
| MmeI | TCCRAC | 1 cut(s) | 496 |
| MnlI | CCTC | 8 cut(s) | 106, 191, 205, 229, 270, 319, 419, 436 |
| Mox20I | TGGCCA | 1 cut(s) | 256 |
| MroXI | GAANNNNTTC | 1 cut(s) | 339 |
| MscI | TGGCCA | 1 cut(s) | 256 |
| Msp20I | TGGCCA | 1 cut(s) | 256 |
| MspR9I | CCNGG | 1 cut(s) | 231 |
| MunI | CAATTG | 1 cut(s) | 345 |
| Mva1269I | GAATGC | 1 cut(s) | 339 |
| MvaI | CCWGG | 1 cut(s) | 231 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 296 |
| NdeII | GATC | 4 cut(s) | 55, 166, 490, 564 |
| NlaIII | CATG | 5 cut(s) | 334, 377, 415, 455, 476 |
| NmuCI | GTSAC | 2 cut(s) | 200, 206 |
| PasI | CCCWGGG | 1 cut(s) | 230 |
| PctI | GAATGC | 1 cut(s) | 339 |
| PdmI | GAANNNNTTC | 1 cut(s) | 339 |
| PfeI | GAWTC | 1 cut(s) | 361 |
| PkrI | GCNGC | 4 cut(s) | 13, 44, 47, 388 |
| PpuMI | RGGWCCY | 1 cut(s) | 437 |
| Psp5II | RGGWCCY | 1 cut(s) | 437 |
| Psp6I | CCWGG | 1 cut(s) | 229 |
| PspGI | CCWGG | 1 cut(s) | 229 |
| PspPI | GGNCC | 1 cut(s) | 437 |
| PspPPI | RGGWCCY | 1 cut(s) | 437 |
| PstNI | CAGNNNCTG | 1 cut(s) | 440 |
| SatI | GCNGC | 4 cut(s) | 12, 43, 46, 387 |
| Sau3AI | GATC | 4 cut(s) | 55, 166, 490, 564 |
| Sau96I | GGNCC | 1 cut(s) | 437 |
| ScrFI | CCNGG | 1 cut(s) | 231 |
| SduI | GDGCHC | 1 cut(s) | 164 |
| SetI | ASST | 3 cut(s) | 13, 327, 439 |
| SfaNI | GCATC | 2 cut(s) | 195, 498 |
| SinI | GGWCC | 1 cut(s) | 437 |
| SmlI | CTYRAG | 1 cut(s) | 274 |
| SmoI | CTYRAG | 1 cut(s) | 274 |
| Sse9I | AATT | 2 cut(s) | 121, 345 |
| SspMI | CTAG | 1 cut(s) | 198 |
| StyD4I | CCNGG | 1 cut(s) | 229 |
| StyI | CCWWGG | 1 cut(s) | 527 |
| TaaI | ACNGT | 3 cut(s) | 134, 206, 550 |
| TasI | AATT | 2 cut(s) | 121, 345 |
| TfiI | GAWTC | 1 cut(s) | 361 |
| TscAI | CASTG | 3 cut(s) | 169, 211, 249 |
| TseFI | GTSAC | 2 cut(s) | 200, 206 |
| TseI | GCWGC | 4 cut(s) | 11, 42, 45, 386 |
| Tsp45I | GTSAC | 2 cut(s) | 200, 206 |
| TspDTI | ATGAA | 3 cut(s) | 9, 446, 501 |
| TspRI | CASTG | 3 cut(s) | 169, 211, 249 |
| VpaK11BI | GGWCC | 1 cut(s) | 437 |
| XmiI | GTMKAC | 1 cut(s) | 327 |
| XmnI | GAANNNNTTC | 1 cut(s) | 339 |
| XspI | CTAG | 1 cut(s) | 198 |