Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006540

Physical Location & Seq

Genomic Coordinates Forward (+)

8110805 .. 8111872

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAAGAAAAGCTGCAGCTCATTCATCATCTTCTTCAATAGATAGCAGCAACCATCCTGATCATCATCTTCCCAGCCCTACTGCTTCATCATCTTCTTCCTCTCTTTCTCGGAAAATCAATGGAAATTACTGCAATAGCCTCAGCATCACCAGAACAGATTTGAGCACTGATCTGAGACTTGGCCTCAGCATCTCTCCTTCTCATCACAGTGACTTGTCTTCCACTTCAACCCCAAGGGAGCAAGCACTGATAAACTGGCCGCCAATCAAATCTATCTTGAGGAGCACACTTGCAGGGAGAGCAGCAGACAACAGGCGCCATCCCTCCTTATTTGTGAAGGTCTACCTGGAGGGCATTCCAATTGGTAGAAAATTGAATTTGTTTGACCACGATGGTTATTCTGCTTTGATTTCATCTCTTTGCCTCATGTTCAAGACTACCATTCTATGTCCCGAGAATAATCATGTTCATTCGGACAAATATCATGTGTTAACTTATGAAGATCAGGAAGGGGACTGGATGCTGGTTGGAGATGTGCCTTGGGAGATATTCTTGACCACAGTGAAAAGGTTGAAGATCACTAGAGCAGACAGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

201

Amino Acids

22.19

Weight (kDa)

8.71

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17600
fragaria_vesca	FvH4_4g21780
malus_domestica	MD13G1137000.v1.1 MD16G1132500.v1.1
prunus_persica	Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1
pyrus_communis	pycom16g11680
rosa_chinensis	RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791
rosa_laevigata	RLG00000007125 RLG00000007191
rosa_multiflora	Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369680 Rroxscaffold_5G00370470
rosa_rugosa	Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000
rosa_samantha	Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900
rosa_wichuraiana	Rw4G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	319
AgsI	TTSAA	5 cut(s)	39, 231, 379, 436, 577
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	2 cut(s)	14, 20
AluI	AGCT	2 cut(s)	14, 20
Alw21I	GWGCWC	2 cut(s)	170, 290
Alw26I	GTCTC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	184, 260
ApeKI	GCWGC	4 cut(s)	14, 17, 48, 305
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	170, 290
BbvCI	CCTCAGC	2 cut(s)	143, 188
BbvI	GCAGC	3 cut(s)	29, 60, 317
BccI	CCATC	3 cut(s)	63, 330, 389
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	5 cut(s)	15, 18, 49, 263, 306
BlsI	GCNGC	5 cut(s)	16, 19, 50, 264, 307
Bme1390I	CCNGG	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	3 cut(s)	156, 201, 513
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	371
Bpu10I	CCTNAGC	2 cut(s)	143, 188
BpuEI	CTTGAG	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	236, 542
Bse1I	ACTGG	2 cut(s)	263, 524
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	236, 542
BseGI	GGATG	3 cut(s)	55, 322, 528
BseJI	GATNNNNATC	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	157, 167, 202
BseNI	ACTGG	2 cut(s)	263, 524
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	29, 60, 317
BseYI	CCCAGC	1 cut(s)	74
BshFI	GGCC	2 cut(s)	186, 262
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	170, 290
BsiHKCI	CYCGRG	1 cut(s)	455
BslFI	GGGAC	2 cut(s)	438, 530
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	438, 530
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	186, 262
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	170, 290
Bsp143I	GATC	4 cut(s)	61, 172, 505, 579
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	2 cut(s)	186, 262
BspCNI	CTCAG	3 cut(s)	156, 168, 201
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	263, 524
BssECI	CCNNGG	2 cut(s)	236, 542
BssMI	GATC	4 cut(s)	61, 172, 505, 579
BssNI	GRCGYC	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	236, 542
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	212, 565
BstACI	GRCGYC	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	143, 176, 188
BstF5I	GGATG	3 cut(s)	55, 322, 528
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	4 cut(s)	64, 175, 508, 582
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	4 cut(s)	61, 172, 505, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	29, 60, 317
BstV2I	GAAGAC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	186, 262
BtsCI	GGATG	3 cut(s)	55, 322, 528
BtsIMutI	CAGTG	4 cut(s)	168, 217, 248, 570
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	321
CviAII	CATG	3 cut(s)	430, 467, 488
CviJI	RGCY	6 cut(s)	14, 20, 78, 141, 186, 262
CviKI_1	RGCY	6 cut(s)	14, 20, 78, 141, 186, 262
DdeI	CTNAG	3 cut(s)	143, 176, 188
DinI	GGCGCC	1 cut(s)	320
DpnI	GATC	4 cut(s)	63, 174, 507, 581
DpnII	GATC	4 cut(s)	61, 172, 505, 579
EaeI	YGGCCR	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	236, 542
Eco88I	CYCGRG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	236, 542
EgeI	GGCGCC	1 cut(s)	320
EheI	GGCGCC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	236, 542
FaeI	CATG	3 cut(s)	433, 470, 491
FaiI	YATR	5 cut(s)	431, 451, 468, 489, 501
FaqI	GGGAC	2 cut(s)	438, 530
FatI	CATG	3 cut(s)	429, 466, 487
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	5 cut(s)	15, 18, 49, 263, 306
FokI	GGATG	3 cut(s)	42, 309, 535
Fsp4HI	GCNGC	5 cut(s)	15, 18, 49, 263, 306
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	5 cut(s)	15, 18, 49, 263, 306
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	186, 262
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	433, 470, 491
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HpaI	GTTAAC	1 cut(s)	495
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	346, 495
Hpy188I	TCNGA	3 cut(s)	114, 177, 478
Hpy188III	TCNNGA	6 cut(s)	59, 280, 436, 455, 509, 556
Hpy8I	GTNNAC	2 cut(s)	346, 495
HpyAV	CCTTC	3 cut(s)	210, 334, 506
HpyCH4III	ACNGT	2 cut(s)	212, 565
HpyCH4V	TGCA	3 cut(s)	17, 135, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	3 cut(s)	143, 176, 188
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	3 cut(s)	433, 470, 491
HspAI	GCGC	1 cut(s)	319
KasI	GGCGCC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	61, 172, 505, 579
LmnI	GCTCC	2 cut(s)	241, 285
Lsp1109I	GCAGC	3 cut(s)	29, 60, 317
LweI	GCATC	3 cut(s)	156, 201, 513
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	4 cut(s)	63, 174, 507, 581
MboI	GATC	4 cut(s)	61, 172, 505, 579
MboII	GAAGA	9 cut(s)	18, 24, 27, 62, 87, 90, 213, 515, 589
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	2 cut(s)	170, 290
MluCI	AATT	4 cut(s)	127, 363, 374, 379
Mly113I	GGCGCC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	7 cut(s)	112, 152, 197, 276, 337, 346, 437
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	302
NarI	GGCGCC	1 cut(s)	319
NdeII	GATC	4 cut(s)	61, 172, 505, 579
NlaIII	CATG	3 cut(s)	433, 470, 491
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	357
PkrI	GCNGC	5 cut(s)	16, 19, 50, 264, 307
PluTI	GGCGCC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	320
PstI	CTGCAG	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	5 cut(s)	15, 18, 49, 263, 306
Sau3AI	GATC	4 cut(s)	61, 172, 505, 579
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	170, 290
SetI	ASST	5 cut(s)	16, 22, 345, 351, 575
SfaNI	GCATC	3 cut(s)	156, 201, 513
SfcI	CTRYAG	1 cut(s)	15
SfoI	GGCGCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	4 cut(s)	127, 363, 374, 379
SsiI	CCGC	1 cut(s)	263
SspDI	GGCGCC	1 cut(s)	318
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	236, 542
TaaI	ACNGT	2 cut(s)	212, 565
TasI	AATT	4 cut(s)	127, 363, 374, 379
TauI	GCSGC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	4 cut(s)	175, 217, 255, 570
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	4 cut(s)	14, 17, 48, 305
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	5 cut(s)	15, 78, 405, 461, 516
TspRI	CASTG	4 cut(s)	175, 217, 255, 570
XapI	RAATTY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.