Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006540

Physical Location & Seq

Genomic Coordinates Forward (+)

10120494 .. 10121822

Gene Structure 1329 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1132500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAAGAAAAGCTGCAGCTTATTCATCATCTTCTTCAATAGATAGCAGCAACCATCCTGATCATCATCTTCCTAGCCCTACTGCCTCATCATCTTCTTCCTCTCTTTCTCGGAAAATCAATGGAAATTACTGCAATAGCCTCAGCATCACCAGAACAGATTTGAGCACTGATCTGAGACTTGGCCTCAGCATCTCTCCTTCTCATCACAGTGACTTGTCTTCCACTTCAACCCCAAGGGAGCAAGCACTGATAAACTGGCCACCAATCAAATCTATCTTGAGGAGCACACTTGCAGGGAGAGGAGCAGACAACAGGCGCCATCCCTCCTTATTTGTGAAGGTCTACCTGGAGGGCGTTCCAATTGGTAGAAAATTGAATTTGTTTGACCATGATGGTTATTCTGCTTTGATTTCATCTCTTTGCCTCATGTTCCAGACCACCATTCTATGTCCCGAGAATAATCATTTTCATTTGGACAAATATCATGTGTTAACTTATGAAGATCAAGAAGGGGACTGGATGCTGGTTGGAGATGTGCCTTGGGAGATATTCTTGACCACAGTGAAAAGGTTGAAGATCACTAGAGCAGACAGACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

201

Amino Acids

22.32

Weight (kDa)

8.81

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	77 - 196	6.1e-29	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17600
fragaria_vesca	FvH4_4g21780
malus_domestica	MD13G1137000.v1.1 MD16G1132500.v1.1
prunus_persica	Prupe.1G208300_v2.0.a1 Prupe.1G208300_v2.0.a1
pyrus_communis	pycom16g11680
rosa_chinensis	RchiOBHm_Chr4g0428011 RchiOBHm_Chr4g0428791
rosa_laevigata	RLG00000007125 RLG00000007191
rosa_multiflora	Rmu_sc0000066.1_g000003 Rmu_sc0028413.1_g000001 Rmu_sc0028414.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369680 Rroxscaffold_5G00370470
rosa_rugosa	Rorug04G0221000 Rorug04G0228800 Rorug04G0228900 Rorug04G0229000
rosa_samantha	Rh4AG278500 Rh4AG285900 Rh4CG307700 Rh4DG281200 Rh4DG288900
rosa_wichuraiana	Rw4G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AccI	GTMKAC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	379
AcyI	GRCGYC	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	39, 231, 379, 577
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	2 cut(s)	14, 20
AluI	AGCT	2 cut(s)	14, 20
Alw21I	GWGCWC	2 cut(s)	170, 290
Alw26I	GTCTC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	184, 260
ApeKI	GCWGC	3 cut(s)	14, 17, 48
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	170, 290
BbvCI	CCTCAGC	2 cut(s)	143, 188
BbvI	GCAGC	2 cut(s)	29, 60
BccI	CCATC	3 cut(s)	63, 330, 389
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	75, 585
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	3 cut(s)	15, 18, 49
BlsI	GCNGC	3 cut(s)	16, 19, 50
Bme1390I	CCNGG	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	3 cut(s)	156, 201, 513
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	371
Bpu10I	CCTNAGC	2 cut(s)	143, 188
BpuEI	CTTGAG	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	236, 542
Bse1I	ACTGG	2 cut(s)	263, 524
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	236, 542
BseGI	GGATG	3 cut(s)	55, 322, 528
BseJI	GATNNNNATC	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	157, 167, 202
BseNI	ACTGG	2 cut(s)	263, 524
BseRI	GAGGAG	2 cut(s)	298, 318
BseXI	GCAGC	2 cut(s)	29, 60
BshFI	GGCC	2 cut(s)	186, 262
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	170, 290
BsiHKCI	CYCGRG	1 cut(s)	455
BslFI	GGGAC	2 cut(s)	438, 530
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	438, 530
BsnI	GGCC	2 cut(s)	186, 262
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	170, 290
Bsp143I	GATC	4 cut(s)	61, 172, 505, 579
BspANI	GGCC	2 cut(s)	186, 262
BspCNI	CTCAG	3 cut(s)	156, 168, 201
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	263, 524
BssECI	CCNNGG	2 cut(s)	236, 542
BssMI	GATC	4 cut(s)	61, 172, 505, 579
BssNI	GRCGYC	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	236, 542
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	212, 565
BstACI	GRCGYC	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	143, 176, 188
BstF5I	GGATG	3 cut(s)	55, 322, 528
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	4 cut(s)	64, 175, 508, 582
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	4 cut(s)	61, 172, 505, 579
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	29, 60
BstV2I	GAAGAC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	186, 262
BtsCI	GGATG	3 cut(s)	55, 322, 528
BtsIMutI	CAGTG	4 cut(s)	168, 217, 248, 570
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	321
CviAII	CATG	3 cut(s)	392, 430, 488
CviJI	RGCY	6 cut(s)	14, 20, 78, 141, 186, 262
CviKI_1	RGCY	6 cut(s)	14, 20, 78, 141, 186, 262
DdeI	CTNAG	3 cut(s)	143, 176, 188
DinI	GGCGCC	1 cut(s)	320
DpnI	GATC	4 cut(s)	63, 174, 507, 581
DpnII	GATC	4 cut(s)	61, 172, 505, 579
EaeI	YGGCCR	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	236, 542
Eco88I	CYCGRG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	236, 542
EgeI	GGCGCC	1 cut(s)	320
EheI	GGCGCC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	236, 542
FaeI	CATG	3 cut(s)	395, 433, 491
FaiI	YATR	5 cut(s)	393, 431, 451, 489, 501
FaqI	GGGAC	2 cut(s)	438, 530
FatI	CATG	3 cut(s)	391, 429, 487
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	15, 18, 49
FokI	GGATG	3 cut(s)	42, 309, 535
Fsp4HI	GCNGC	3 cut(s)	15, 18, 49
FspBI	CTAG	2 cut(s)	75, 585
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	3 cut(s)	15, 18, 49
GsuI	CTGGAG	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	186, 262
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	395, 433, 491
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HpaI	GTTAAC	1 cut(s)	495
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	346, 495
Hpy188I	TCNGA	2 cut(s)	114, 177
Hpy188III	TCNNGA	6 cut(s)	59, 280, 436, 455, 509, 556
Hpy8I	GTNNAC	2 cut(s)	346, 495
HpyAV	CCTTC	3 cut(s)	210, 334, 506
HpyCH4III	ACNGT	2 cut(s)	212, 565
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	3 cut(s)	17, 135, 296
HpyF3I	CTNAG	3 cut(s)	143, 176, 188
HpySE526I	ACGT	1 cut(s)	598
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	3 cut(s)	395, 433, 491
HspAI	GCGC	1 cut(s)	319
KasI	GGCGCC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	61
KspAI	GTTAAC	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	61, 172, 505, 579
LmnI	GCTCC	3 cut(s)	241, 285, 305
Lsp1109I	GCAGC	2 cut(s)	29, 60
LweI	GCATC	3 cut(s)	156, 201, 513
MaeI	CTAG	2 cut(s)	75, 585
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	4 cut(s)	63, 174, 507, 581
MboI	GATC	4 cut(s)	61, 172, 505, 579
MboII	GAAGA	9 cut(s)	18, 24, 27, 62, 87, 90, 213, 515, 589
MfeI	CAATTG	1 cut(s)	363
MhlI	GDGCHC	2 cut(s)	170, 290
MlsI	TGGCCA	1 cut(s)	262
MluCI	AATT	4 cut(s)	127, 363, 374, 379
MluNI	TGGCCA	1 cut(s)	262
Mly113I	GGCGCC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	9 cut(s)	97, 112, 152, 197, 276, 296, 337, 346, 437
Mox20I	TGGCCA	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	262
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	350
NarI	GGCGCC	1 cut(s)	319
NdeII	GATC	4 cut(s)	61, 172, 505, 579
NlaIII	CATG	3 cut(s)	395, 433, 491
NlaIV	GGNNCC	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	16, 19, 50
PluTI	GGCGCC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	320
PstI	CTGCAG	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	3 cut(s)	15, 18, 49
Sau3AI	GATC	4 cut(s)	61, 172, 505, 579
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	170, 290
SetI	ASST	6 cut(s)	16, 22, 345, 351, 575, 601
SfaNI	GCATC	3 cut(s)	156, 201, 513
SfcI	CTRYAG	1 cut(s)	15
SfoI	GGCGCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	4 cut(s)	127, 363, 374, 379
SspDI	GGCGCC	1 cut(s)	318
SspMI	CTAG	2 cut(s)	75, 585
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	236, 542
TaaI	ACNGT	2 cut(s)	212, 565
TaiI	ACGT	1 cut(s)	601
TasI	AATT	4 cut(s)	127, 363, 374, 379
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	4 cut(s)	175, 217, 255, 570
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	3 cut(s)	14, 17, 48
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	15, 405, 461, 516
TspRI	CASTG	4 cut(s)	175, 217, 255, 570
XapI	RAATTY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	2 cut(s)	75, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.