FvH4_4g21780

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006540
Physical Location & Seq
Reverse (-)
24779482 .. 24781503
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21780.t1

Sequence Viewer

Length: 639 bp
ATGGGATTAAGGGCTGCTGCACATTCATCATCTTCTTCCATAGACAGCAGCAACCATCCTGATCTTGATGGTCTTCTGATTCCTAAGCCTTCCGGGTCGTCGTCTTCTTCCTCTCTCTCTCACAAAATCAAAATCTTCAATGGTGGTACTAATTCTCGTAACAGTCGCAGAAGCAGTCATACCAGAACAGATTTGAGCACTGATCTCAGACTTGGCCTCAGCATCTCACCTTATCATCACTCTGACTTGTCTTCCACTACTTCAAGCCCAAGGGAAGAAGCATTGTTAAGCTGGCCGCCGATCAAATCGATCTTGAGGTGCACACTTTCAGGCAAAGCAGAGAATTTCCATCATCAAAATTCTTCTCTATTTGTGAAGGTGTACATGGAGGGAATCCCAATTGGTAGAAAATTAAATCTGTTTGCTCATGATGGTTATGATGCTTTGATCACATCTCTGAGCCTCATGTTCAAGACCACCATTCTTTGTCCTGATAATAATCATGTTCATTCAGAGAAATATCATGTCTTAACGTATGAAGATCAAGAAGGGGATTGGATGCTAGTGGGTGATGTGCCTTGGGAGATATTCTTGACTACGGTGAAAAGACTGAAGATCACTAGAGCAGACAGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

213

Amino Acids

23.53

Weight (kDa)

8.44

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 86 - 208 1.6e-31 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 296
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 2 cut(s) 343, 358
AcuI CTGAAG 1 cut(s) 632
AfaI GTAC 2 cut(s) 148, 383
AgsI TTSAA 3 cut(s) 139, 264, 472
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw21I GWGCWC 2 cut(s) 200, 323
Alw44I GTGCAC 1 cut(s) 319
AoxI GGCC 2 cut(s) 214, 293
ApaLI GTGCAC 1 cut(s) 319
ApeKI GCWGC 3 cut(s) 14, 17, 48
ApoI RAATTY 2 cut(s) 343, 358
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 219, 581, 613
BaeGI GKGCMC 1 cut(s) 323
BarI GAAGNNNNNNTAC 2 cut(s) 163, 195
BbsI GAAGAC 3 cut(s) 65, 96, 243
Bbv12I GWGCWC 2 cut(s) 200, 323
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 2 cut(s) 4, 60
BccI CCATC 4 cut(s) 62, 63, 357, 425
BclI TGATCA 1 cut(s) 447
BcnI CCSGG 1 cut(s) 94
BfaI CTAG 2 cut(s) 563, 621
BisI GCNGC 4 cut(s) 15, 18, 49, 296
BlsI GCNGC 4 cut(s) 16, 19, 50, 297
Bme1390I CCNGG 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 3 cut(s) 231, 430, 549
BpiI GAAGAC 3 cut(s) 65, 96, 243
Bpu10I CCTNAGC 2 cut(s) 84, 218
BpuEI CTTGAG 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 94
Bsa29I ATCGAT 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 269, 578
Bse8I GATNNNNATC 1 cut(s) 498
BseCI ATCGAT 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 269, 578
BseGI GGATG 2 cut(s) 55, 564
BseJI GATNNNNATC 1 cut(s) 498
BseMII CTCAG 3 cut(s) 220, 232, 449
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 2 cut(s) 4, 60
BshFI GGCC 2 cut(s) 216, 295
BshVI ATCGAT 1 cut(s) 308
BsiHKAI GWGCWC 2 cut(s) 200, 323
BsiSI CCGG 1 cut(s) 93
BsnI GGCC 2 cut(s) 216, 295
Bsp1286I GDGCHC 2 cut(s) 200, 323
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 7 cut(s) 61, 202, 300, 309, 447, 541, 615
BspACI CCGC 1 cut(s) 296
BspANI GGCC 2 cut(s) 216, 295
BspCNI CTCAG 3 cut(s) 219, 231, 450
BspDI ATCGAT 1 cut(s) 308
BspHI TCATGA 1 cut(s) 427
BsrGI TGTACA 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 269, 578
BssMI GATC 7 cut(s) 61, 202, 300, 309, 447, 541, 615
BssT1I CCWWGG 2 cut(s) 269, 578
Bst4CI ACNGT 2 cut(s) 164, 601
BstAUI TGTACA 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 293
BstDEI CTNAG 4 cut(s) 84, 206, 218, 458
BstF5I GGATG 2 cut(s) 55, 564
BstKTI GATC 7 cut(s) 64, 205, 303, 312, 450, 544, 618
BstMBI GATC 7 cut(s) 61, 202, 300, 309, 447, 541, 615
BstSCI CCNGG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 4, 60
BstV2I GAAGAC 3 cut(s) 65, 96, 243
Bsu15I ATCGAT 1 cut(s) 308
BsuRI GGCC 2 cut(s) 216, 295
BsuTUI ATCGAT 1 cut(s) 308
BtsCI GGATG 2 cut(s) 55, 564
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 293
CciI TCATGA 1 cut(s) 427
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 2 cut(s) 147, 382
CviAII CATG 5 cut(s) 385, 428, 466, 503, 524
CviJI RGCY 7 cut(s) 14, 88, 216, 267, 291, 295, 462
CviKI_1 RGCY 7 cut(s) 14, 88, 216, 267, 291, 295, 462
CviQI GTAC 2 cut(s) 147, 382
DdeI CTNAG 4 cut(s) 84, 206, 218, 458
DpnI GATC 7 cut(s) 63, 204, 302, 311, 449, 543, 617
DpnII GATC 7 cut(s) 61, 202, 300, 309, 447, 541, 615
EaeI YGGCCR 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 269, 578
Eco57I CTGAAG 1 cut(s) 632
EcoT14I CCWWGG 2 cut(s) 269, 578
ErhI CCWWGG 2 cut(s) 269, 578
FaeI CATG 5 cut(s) 388, 431, 469, 506, 527
FaiI YATR 9 cut(s) 41, 180, 386, 429, 438, 467, 504, 525, 537
FatI CATG 5 cut(s) 384, 427, 465, 502, 523
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 4 cut(s) 15, 18, 49, 296
FokI GGATG 2 cut(s) 42, 571
Fsp4HI GCNGC 4 cut(s) 15, 18, 49, 296
FspBI CTAG 2 cut(s) 563, 621
GluI GCNGC 4 cut(s) 15, 18, 49, 296
HaeIII GGCC 2 cut(s) 216, 295
HapII CCGG 1 cut(s) 93
Hin1II CATG 5 cut(s) 388, 431, 469, 506, 527
HinfI GANTC 2 cut(s) 79, 393
HpaII CCGG 1 cut(s) 93
HphI GGTGA 3 cut(s) 219, 581, 613
Hpy166II GTNNAC 2 cut(s) 321, 382
Hpy188I TCNGA 5 cut(s) 78, 209, 244, 459, 514
Hpy188III TCNNGA 8 cut(s) 59, 65, 313, 428, 472, 491, 545, 592
Hpy8I GTNNAC 2 cut(s) 321, 382
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 3 cut(s) 99, 370, 542
HpyCH4III ACNGT 2 cut(s) 164, 601
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 2 cut(s) 20, 321
HpyF3I CTNAG 4 cut(s) 84, 206, 218, 458
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 5 cut(s) 388, 431, 469, 506, 527
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 7 cut(s) 61, 202, 300, 309, 447, 541, 615
LpnPI CCDG 6 cut(s) 72, 106, 196, 277, 315, 504
Lsp1109I GCAGC 2 cut(s) 4, 60
LweI GCATC 3 cut(s) 231, 430, 549
MaeI CTAG 2 cut(s) 563, 621
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 1 cut(s) 158
MalI GATC 7 cut(s) 63, 204, 302, 311, 449, 543, 617
MboI GATC 7 cut(s) 61, 202, 300, 309, 447, 541, 615
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 2 cut(s) 200, 323
MluCI AATT 5 cut(s) 151, 343, 358, 399, 410
MnlI CCTC 5 cut(s) 121, 227, 309, 382, 473
MseI TTAA 4 cut(s) 8, 287, 413, 530
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 94
MunI CAATTG 1 cut(s) 399
NciI CCSGG 1 cut(s) 94
NdeII GATC 7 cut(s) 61, 202, 300, 309, 447, 541, 615
NlaIII CATG 5 cut(s) 388, 431, 469, 506, 527
PagI TCATGA 1 cut(s) 427
PfeI GAWTC 2 cut(s) 79, 393
PkrI GCNGC 4 cut(s) 16, 19, 50, 297
RsaI GTAC 2 cut(s) 148, 383
RsaNI GTAC 2 cut(s) 147, 382
SaqAI TTAA 4 cut(s) 8, 287, 413, 530
SatI GCNGC 4 cut(s) 15, 18, 49, 296
Sau3AI GATC 7 cut(s) 61, 202, 300, 309, 447, 541, 615
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 2 cut(s) 200, 323
SetI ASST 5 cut(s) 232, 293, 320, 381, 536
SfaNI GCATC 3 cut(s) 231, 430, 549
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 5 cut(s) 151, 343, 358, 399, 410
SsiI CCGC 1 cut(s) 296
SspMI CTAG 2 cut(s) 563, 621
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 2 cut(s) 269, 578
TaaI ACNGT 2 cut(s) 164, 601
TaiI ACGT 1 cut(s) 536
TaqI TCGA 1 cut(s) 308
TasI AATT 5 cut(s) 151, 343, 358, 399, 410
TatI WGTACW 1 cut(s) 381
TauI GCSGC 1 cut(s) 298
TfiI GAWTC 2 cut(s) 79, 393
Tru1I TTAA 4 cut(s) 8, 287, 413, 530
Tru9I TTAA 4 cut(s) 8, 287, 413, 530
TscAI CASTG 1 cut(s) 205
TseI GCWGC 3 cut(s) 14, 17, 48
TspDTI ATGAA 3 cut(s) 15, 497, 552
TspRI CASTG 1 cut(s) 205
VneI GTGCAC 1 cut(s) 319
XapI RAATTY 2 cut(s) 343, 358
XspI CTAG 2 cut(s) 563, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.