RchiOBHm_Chr4g0428011

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006540
Physical Location & Seq
Reverse (-)
53104302 .. 53105642
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39692

Sequence Viewer

Length: 633 bp
ATGGGATTACGAGCTGCAGCACATTCATCATCTTCTTCCATAGACAGCAGCAACCATCCTGATCCTGACCTTGATGGTCTTCTTCCTAAGCCTTCTGGATCGTCTTCTTCTTCGTCTCTCTCTCACAAAATCAATGGTGGTTCTAATTCTCGTAACAGTCGCAGAAGCACTCATACCAGAACAGATTTGAGCACTGATCTCAGACTTGGCCTGAGCATATCACCGTCTCATCACTCTGACCTGTCTTCCACTACTTCAAGCCCAAGGGAAGAAGCATTGGTAAGCTGGCCGCCGATCAAATCGATCTTGAGGAGCACACTTTCAGGCAAATCAGAGAATTACCATCATCAGAATTCTTCTTTATTTGTGAAGGTCTACATGGAGGGAATCCCAATTGGTAGAAAATTGAATCTGTTTGCTCACGATGGTTATGATGCTTTGATCACAACTCTGAGCCTCATGTTCAAGACCACCATTCTATGTCCTGATAATAATCATGTTCATTCAGAGAAATATTATGTTTTAACTTATGAAGATCAAGAAGGGGATTGGATGCTGGTTGGAGATGTGCCTTGGGAGATATTCTTGACTACTGTGAAAAGACTGAAGATTACTAGAGCAGACAGATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA

Protein Analysis

210

Amino Acids

23.21

Weight (kDa)

7.19

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 79 - 206 2.7e-34 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 375
AciI CCGC 1 cut(s) 290
AclWI GGATC 2 cut(s) 56, 106
AcoI YGGCCR 1 cut(s) 287
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 626
AgsI TTSAA 3 cut(s) 258, 409, 466
AluBI AGCT 2 cut(s) 14, 285
AluI AGCT 2 cut(s) 14, 285
Alw21I GWGCWC 2 cut(s) 194, 317
Alw26I GTCTC 2 cut(s) 120, 231
AlwI GGATC 2 cut(s) 56, 106
AoxI GGCC 2 cut(s) 208, 287
ApeKI GCWGC 3 cut(s) 14, 17, 48
ApoI RAATTY 1 cut(s) 352
AsuHPI GGTGA 1 cut(s) 213
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BbsI GAAGAC 3 cut(s) 71, 96, 237
Bbv12I GWGCWC 2 cut(s) 194, 317
BbvI GCAGC 2 cut(s) 29, 60
BccI CCATC 4 cut(s) 63, 68, 351, 419
BclI TGATCA 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 120, 231
BfaI CTAG 1 cut(s) 615
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 4 cut(s) 15, 18, 49, 290
BlsI GCNGC 4 cut(s) 16, 19, 50, 291
BmsI GCATC 2 cut(s) 424, 543
BpiI GAAGAC 3 cut(s) 71, 96, 237
Bpu10I CCTNAGC 2 cut(s) 87, 212
BpuEI CTTGAG 1 cut(s) 328
Bsa29I ATCGAT 1 cut(s) 302
BsaBI GATNNNNATC 1 cut(s) 492
BsaJI CCNNGG 2 cut(s) 263, 572
Bse8I GATNNNNATC 1 cut(s) 492
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 263, 572
BseGI GGATG 2 cut(s) 55, 558
BseJI GATNNNNATC 1 cut(s) 492
BseMII CTCAG 3 cut(s) 203, 214, 443
BseRI GAGGAG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 29, 60
BshFI GGCC 2 cut(s) 210, 289
BshVI ATCGAT 1 cut(s) 302
BsiHKAI GWGCWC 2 cut(s) 194, 317
BsmAI GTCTC 2 cut(s) 120, 231
BsmBI CGTCTC 2 cut(s) 120, 231
BsnI GGCC 2 cut(s) 210, 289
Bsp1286I GDGCHC 2 cut(s) 194, 317
Bsp143I GATC 7 cut(s) 61, 98, 196, 294, 303, 441, 535
BspACI CCGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 210, 289
BspCNI CTCAG 3 cut(s) 204, 213, 444
BspDI ATCGAT 1 cut(s) 302
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 2 cut(s) 56, 106
BssECI CCNNGG 2 cut(s) 263, 572
BssMI GATC 7 cut(s) 61, 98, 196, 294, 303, 441, 535
BssT1I CCWWGG 2 cut(s) 263, 572
Bst4CI ACNGT 3 cut(s) 158, 225, 595
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 4 cut(s) 87, 200, 212, 452
BstF5I GGATG 2 cut(s) 55, 558
BstKTI GATC 7 cut(s) 64, 101, 199, 297, 306, 444, 538
BstMAI GTCTC 2 cut(s) 120, 231
BstMBI GATC 7 cut(s) 61, 98, 196, 294, 303, 441, 535
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 29, 60
BstV2I GAAGAC 3 cut(s) 71, 96, 237
Bsu15I ATCGAT 1 cut(s) 302
BsuRI GGCC 2 cut(s) 210, 289
BsuTUI ATCGAT 1 cut(s) 302
BtsCI GGATG 2 cut(s) 55, 558
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 287
ClaI ATCGAT 1 cut(s) 302
CviAII CATG 3 cut(s) 379, 460, 497
CviJI RGCY 7 cut(s) 14, 91, 210, 261, 285, 289, 456
CviKI_1 RGCY 7 cut(s) 14, 91, 210, 261, 285, 289, 456
DdeI CTNAG 4 cut(s) 87, 200, 212, 452
DpnI GATC 7 cut(s) 63, 100, 198, 296, 305, 443, 537
DpnII GATC 7 cut(s) 61, 98, 196, 294, 303, 441, 535
EaeI YGGCCR 1 cut(s) 287
Eco130I CCWWGG 2 cut(s) 263, 572
Eco57I CTGAAG 1 cut(s) 626
EcoRI GAATTC 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 263, 572
ErhI CCWWGG 2 cut(s) 263, 572
Esp3I CGTCTC 2 cut(s) 120, 231
FaeI CATG 3 cut(s) 382, 463, 500
FatI CATG 3 cut(s) 378, 459, 496
FbaI TGATCA 1 cut(s) 441
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 4 cut(s) 15, 18, 49, 290
FokI GGATG 2 cut(s) 42, 565
Fsp4HI GCNGC 4 cut(s) 15, 18, 49, 290
FspBI CTAG 1 cut(s) 615
GluI GCNGC 4 cut(s) 15, 18, 49, 290
HaeIII GGCC 2 cut(s) 210, 289
Hin1II CATG 3 cut(s) 382, 463, 500
HinfI GANTC 2 cut(s) 387, 409
HphI GGTGA 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 6 cut(s) 203, 238, 334, 351, 453, 508
Hpy188III TCNNGA 9 cut(s) 59, 65, 96, 307, 422, 466, 485, 539, 586
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 3 cut(s) 102, 364, 536
HpyCH4III ACNGT 3 cut(s) 158, 225, 595
HpyCH4V TGCA 1 cut(s) 17
HpyF3I CTNAG 4 cut(s) 87, 200, 212, 452
Hsp92II CATG 3 cut(s) 382, 463, 500
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 7 cut(s) 61, 98, 196, 294, 303, 441, 535
LmnI GCTCC 1 cut(s) 312
Lsp1109I GCAGC 2 cut(s) 29, 60
LweI GCATC 2 cut(s) 424, 543
MaeI CTAG 1 cut(s) 615
MaeIII GTNAC 1 cut(s) 152
MalI GATC 7 cut(s) 63, 100, 198, 296, 305, 443, 537
MboI GATC 7 cut(s) 61, 98, 196, 294, 303, 441, 535
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 2 cut(s) 194, 317
MluCI AATT 5 cut(s) 145, 337, 352, 393, 404
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 3 cut(s) 303, 376, 467
MseI TTAA 1 cut(s) 524
MunI CAATTG 1 cut(s) 393
NdeII GATC 7 cut(s) 61, 98, 196, 294, 303, 441, 535
NlaIII CATG 3 cut(s) 382, 463, 500
PfeI GAWTC 2 cut(s) 387, 409
PkrI GCNGC 4 cut(s) 16, 19, 50, 291
PstI CTGCAG 1 cut(s) 19
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 4 cut(s) 15, 18, 49, 290
Sau3AI GATC 7 cut(s) 61, 98, 196, 294, 303, 441, 535
SduI GDGCHC 2 cut(s) 194, 317
SetI ASST 5 cut(s) 16, 72, 243, 287, 375
SfaNI GCATC 2 cut(s) 424, 543
SfcI CTRYAG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 5 cut(s) 145, 337, 352, 393, 404
SsiI CCGC 1 cut(s) 290
SspI AATATT 1 cut(s) 515
SspMI CTAG 1 cut(s) 615
StyI CCWWGG 2 cut(s) 263, 572
TaaI ACNGT 3 cut(s) 158, 225, 595
TaqI TCGA 1 cut(s) 302
TasI AATT 5 cut(s) 145, 337, 352, 393, 404
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 2 cut(s) 387, 409
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 1 cut(s) 199
TseI GCWGC 3 cut(s) 14, 17, 48
TspDTI ATGAA 3 cut(s) 15, 491, 546
TspRI CASTG 1 cut(s) 199
XapI RAATTY 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 375
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.