Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Reverse (-)

6774970 .. 6775848

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGAGAATGTGGAGAAGAGGTTAATCCAACTATTTACAACGTATCTGAACAAGGCAAAACATCACATGCAGGGAGGGAGTGACATGCCAAATGAACTTGTCATTGGTCTTCATTGCCGTGGAGAATTTGAAAGCCACCGGTCTTGGATGCAGCCACGAGTTCAAAGAGGCTTGGAGGAAAGGATGCTATTTTCAAGTCACAAGAGGGCTCAGATATATAAAGAAGCTGCTACATCATCTTTGGTTGCTGCTAGTTCCGCACCTGGAGAAGTTAGAGAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

94

Amino Acids

10.71

Weight (kDa)

8.93

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	125
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	131, 164, 195
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
ApeKI	GCWGC	3 cut(s)	151, 227, 248
ApoI	RAATTY	1 cut(s)	125
AsiGI	ACCGGT	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	163, 214, 235
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	264
BfaI	CTAG	1 cut(s)	252
BisI	GCNGC	3 cut(s)	152, 228, 249
BlsI	GCNGC	3 cut(s)	153, 229, 250
Bme1390I	CCNGG	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	138, 174
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bse118I	RCCGGY	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	153, 189
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	224
BseXI	GCAGC	3 cut(s)	163, 214, 235
BshTI	ACCGGT	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	211
BspACI	CCGC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	118
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	153, 189
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	2 cut(s)	70, 88
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	163, 214, 235
BstV2I	GAAGAC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	153, 189
Cfr10I	RCCGGY	1 cut(s)	138
CspAI	ACCGGT	1 cut(s)	138
CspCI	CAANNNNNGTGG	2 cut(s)	125, 160
CviAII	CATG	2 cut(s)	67, 85
CviJI	RGCY	5 cut(s)	135, 154, 171, 209, 227
CviKI_1	RGCY	5 cut(s)	135, 154, 171, 209, 227
DdeI	CTNAG	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	2 cut(s)	70, 88
FaiI	YATR	4 cut(s)	68, 86, 217, 219
FatI	CATG	2 cut(s)	66, 84
Fnu4HI	GCNGC	3 cut(s)	152, 228, 249
FokI	GGATG	2 cut(s)	160, 196
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	152, 228, 249
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	3 cut(s)	152, 228, 249
GsuI	CTGGAG	1 cut(s)	285
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	2 cut(s)	70, 88
HpaII	CCGG	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	48, 213
HpyAV	CCTTC	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	70, 151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	70, 88
LpnPI	CCDG	4 cut(s)	56, 152, 249, 276
Lsp1109I	GCAGC	3 cut(s)	163, 214, 235
LweI	GCATC	2 cut(s)	138, 174
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	80, 197
MboII	GAAGA	2 cut(s)	28, 101
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	5 cut(s)	12, 68, 161, 169, 198
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	70, 88
NmuCI	GTSAC	2 cut(s)	80, 197
NspI	RCATGY	2 cut(s)	70, 88
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	153, 229, 250
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	152, 228, 249
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	4 cut(s)	23, 44, 229, 265
SfaNI	GCATC	2 cut(s)	138, 174
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	44
TasI	AATT	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseFI	GTSAC	2 cut(s)	80, 197
TseI	GCWGC	3 cut(s)	151, 227, 248
Tsp45I	GTSAC	2 cut(s)	80, 197
TspDTI	ATGAA	2 cut(s)	101, 108
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	2 cut(s)	70, 88
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.