Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8217068.1

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 734

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8217068.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 733 bp

gtgaaccaaccaagcaaaagattggttgtgatgttcttcaaaatgagctacaggaaatctgcaacgcatccaatgatgatgatcaatcacagtcatttggaaatttgactgagaagtctcaccctgagcaattgggactgcctcctgaagatgtgagcaacattagtcaaggtgctgctgtaaacattcttaccaaatcagcacacggacatccttccacctctgaaaacattcaaaatggaccattacaaatcagaacagcattatctagttgtactaccagtgaccacttgcaatcattttctggcaatgtgaccaagaattctcttgctgaaaaattggaactgccttgtgaagagcctcatgaagatctgggttgtcagactggaaaaacttcatgctctgaacagatttcagtggaacagagaaatgattttggtttcagaacaagagaagaaaagcagcatatcggctctgatattgttcaaaatgaaatcttacaaactattattccagtatccagctgtggcaatgaacaattgcagttcattagtgaaactgtgaacacgacttttcctaatgaacaagctggagtgcctcctgaagatgtgagcaagacattggaaccgacaaataattttggttttgaaactcaatctagtgaactagcagaagacaagcagcattttggctctgatgttccacaaaacgaagggttacaaagctgtgatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

244

Amino Acids

26.56

Weight (kDa)

4.39

Isoelectric Point (pI)

72.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	102, 321
AcuI	CTGAAG	2 cut(s)	167, 623
AfaI	GTAC	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	40, 235, 487, 649
AluBI	AGCT	4 cut(s)	48, 524, 589, 725
AluI	AGCT	4 cut(s)	48, 524, 589, 725
Alw26I	GTCTC	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	175, 462, 681
ApoI	RAATTY	2 cut(s)	102, 321
Asp700I	GAANNNNTTC	2 cut(s)	230, 393
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	680
BbvI	GCAGC	3 cut(s)	162, 474, 693
BccI	CCATC	1 cut(s)	724
BciVI	GTATCC	1 cut(s)	528
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	3 cut(s)	269, 659, 667
BfmI	CTRYAG	1 cut(s)	49
BfuI	GTATCC	1 cut(s)	528
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	3 cut(s)	176, 463, 682
BlsI	GCNGC	3 cut(s)	177, 464, 683
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	626
BmsI	GCATC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	680
BpmI	CTGGAG	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	80
Bse1I	ACTGG	3 cut(s)	281, 390, 514
Bse3DI	GCAATG	2 cut(s)	315, 537
Bse8I	GATNNNNATC	1 cut(s)	80
BseGI	GGATG	2 cut(s)	67, 210
BseJI	GATNNNNATC	1 cut(s)	80
BseMI	GCAATG	2 cut(s)	315, 537
BseMII	CTCAG	2 cut(s)	101, 116
BseNI	ACTGG	3 cut(s)	281, 390, 514
BseXI	GCAGC	3 cut(s)	162, 474, 693
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	81, 369
BspCNI	CTCAG	2 cut(s)	102, 117
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	626
BspQI	GCTCTTC	1 cut(s)	350
BsrDI	GCAATG	2 cut(s)	315, 537
BsrI	ACTGG	3 cut(s)	281, 390, 514
BssMI	GATC	2 cut(s)	81, 369
Bst4CI	ACNGT	2 cut(s)	92, 561
Bst6I	CTCTTC	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	110, 125
BstF5I	GGATG	2 cut(s)	67, 210
BstKTI	GATC	2 cut(s)	84, 372
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	81, 369
BstSFI	CTRYAG	1 cut(s)	49
BstV1I	GCAGC	3 cut(s)	162, 474, 693
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	67, 210
BtsIMutI	CAGTG	2 cut(s)	288, 422
CciI	TCATGA	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	2 cut(s)	364, 398
CviJI	RGCY	7 cut(s)	48, 360, 473, 524, 589, 692, 725
CviKI_1	RGCY	7 cut(s)	48, 360, 473, 524, 589, 692, 725
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	2 cut(s)	110, 125
DpnI	GATC	2 cut(s)	83, 371
DpnII	GATC	2 cut(s)	81, 369
DrdI	GACNNNNNNGTC	1 cut(s)	114
DseDI	GACNNNNNNGTC	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	167, 623
EcoRI	GAATTC	1 cut(s)	321
FaeI	CATG	2 cut(s)	367, 401
FaiI	YATR	3 cut(s)	365, 399, 467
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	363, 397
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	176, 463, 682
FokI	GGATG	2 cut(s)	54, 197
Fsp4HI	GCNGC	3 cut(s)	176, 463, 682
FspBI	CTAG	3 cut(s)	269, 659, 667
GluI	GCNGC	3 cut(s)	176, 463, 682
GsuI	CTGGAG	1 cut(s)	611
Hin1II	CATG	2 cut(s)	367, 401
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	4 cut(s)	4, 183, 564, 664
Hpy188I	TCNGA	7 cut(s)	225, 256, 383, 405, 445, 477, 696
Hpy188III	TCNNGA	3 cut(s)	145, 364, 601
Hpy8I	GTNNAC	4 cut(s)	4, 183, 564, 664
HpyAV	CCTTC	2 cut(s)	224, 706
HpyCH4III	ACNGT	2 cut(s)	92, 561
HpyCH4V	TGCA	3 cut(s)	62, 294, 543
HpyF3I	CTNAG	2 cut(s)	110, 125
Hsp92II	CATG	2 cut(s)	367, 401
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	81, 369
LguI	GCTCTTC	1 cut(s)	350
Lsp1109I	GCAGC	3 cut(s)	162, 474, 693
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	3 cut(s)	269, 659, 667
MaeIII	GTNAC	3 cut(s)	283, 312, 716
MalI	GATC	2 cut(s)	83, 371
MboI	GATC	2 cut(s)	81, 369
MboII	GAAGA	7 cut(s)	28, 160, 367, 379, 466, 616, 685
MfeI	CAATTG	2 cut(s)	130, 538
MflI	RGATCY	1 cut(s)	369
MluCI	AATT	6 cut(s)	102, 130, 321, 337, 538, 636
MnlI	CCTC	4 cut(s)	152, 231, 371, 608
MroXI	GAANNNNTTC	2 cut(s)	230, 393
MspA1I	CMGCKG	1 cut(s)	524
MunI	CAATTG	2 cut(s)	130, 538
NdeII	GATC	2 cut(s)	81, 369
NlaIII	CATG	2 cut(s)	367, 401
NlaIV	GGNNCC	1 cut(s)	626
NmuCI	GTSAC	2 cut(s)	283, 312
PagI	TCATGA	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	350
PdmI	GAANNNNTTC	2 cut(s)	230, 393
PkrI	GCNGC	3 cut(s)	177, 464, 683
PspN4I	GGNNCC	1 cut(s)	626
PspPI	GGNCC	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	350
SatI	GCNGC	3 cut(s)	176, 463, 682
Sau3AI	GATC	2 cut(s)	81, 369
Sau96I	GGNCC	1 cut(s)	241
SetI	ASST	6 cut(s)	50, 174, 223, 526, 591, 727
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	6 cut(s)	102, 130, 321, 337, 538, 636
SspMI	CTAG	3 cut(s)	269, 659, 667
TaaI	ACNGT	2 cut(s)	92, 561
TasI	AATT	6 cut(s)	102, 130, 321, 337, 538, 636
TatI	WGTACW	1 cut(s)	274
TscAI	CASTG	2 cut(s)	288, 422
TseFI	GTSAC	2 cut(s)	283, 312
TseI	GCWGC	3 cut(s)	175, 462, 681
Tsp45I	GTSAC	2 cut(s)	283, 312
TspDTI	ATGAA	6 cut(s)	380, 386, 506, 537, 548, 596
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	288, 422
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	2 cut(s)	102, 321
XmnI	GAANNNNTTC	2 cut(s)	230, 393
XspI	CTAG	3 cut(s)	269, 659, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.