Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Forward (+)

16274682 .. 16282057

Gene Structure 7376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1100500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3204 bp

ATGGCTGATGCTACACAACTGGATATTCCTCCAGAACGTGATAGCAGTCATGCAACAAAATGCCAAGAAGAAGGTACATCAGAACAGATACATGAAATTGGTTCTGAAAGTCATTGTAGTGAACCAGCAAAACAAAGCATTGGCTGCGCCATTGTTCGTAATGAGCTACGGGAAATCTGCAATGCCGGTGGACAGTCAGAGTCATTATCTGAAAATGTGACTGAGAATTCTCATCTTGAACAATTGGGACAGCCTTCTGAAGATGTGAGCAAGAGTAGTCAAAGAGGAGCTGAAAATGTTTTTGCAACACAGGGATCTCATTCCAGTTCGGGATACAAACAAGATGAATCATTACAAACCATAACTGCAGTGTCTCCCTGTACCATGAAGGACCAACTGCGATCATTTTCTGAAAATGTGAGCAAGAATTCTCTTATTGATCAAATGGAAATGCCTTGTGAAGATCTGGGTGTGAACAACCCGACCAATAAAACTTCGTGCTCTGAACAAATGCCGTTGGAACAGGAAAGTTATTGTGCTTTTGGAACTTCATCTGGTGAACTAGCTGAAGAAAAGCATCCTTCTTCCTCAGATCGTGTACAAAATGATCAAGTACCCATTTGTGGTAGCAATGAACATTTGCAGTCATCTAGTGAAAATGTGAACATGACTTCTCTTAACGAACAAGCAGGATTGCCTCCTGAAGATCTGTCAAAGACTTGTCAGACTGGCAAAGTTTCATGCTCTAACCAGATTACATTACAGGTGACCAATGAATTTGTGTGTGGAAGTGTACATAGCGAATCAGAAACACAAAAAGATCAGCTTGACTCTGTACCTGCTCATAATAATGAAGTTACAAGTACCCAAGCAGCACCCAGCTCTATTTTTTTTGAACAATCGAGGTCTTGTATTGAAGCTGTGACCCAGGATCCTCCTACTGGACATTTGGAACTACCCATTGAAGACGCAGGCAAGAGTCCTCCTAATGATAAAGAAATGGAACCACTTCCAGAAGATGTGACCCAAAATTTTAGTCTTGAAAAGACAGAAATGCCATCTAAGAATGGACCCAAGGATAAGCAAAATCCAAAATCAAGAAAGAAGAAATATATGTCAAAATCTTCCCTTGGCAGTGACAGAGTTCTGCGCTCAAAGATAGGGGAGAAGCCTAGAGATCCTAAATTAAGTAATAATGCAACTCTTGAATCAAGTAATAGCGTTGCAAATGTAAGTAATGTTGAACATAAAAGAAGGAAGAAGAGAAAGCAGAGCCAACAGAATAGAGTCATTGATGATGAATTTTCAAGAGTCAGGAAACATCTGAGATATTTGCTGAACCGGATAAGCTATGAGAAATCTCTGATTGATGCTTACTCTGGTGAAGGTTGGAAAGGATCCAGCCTAGAAAAACTGAAGCCAGAGAAGGAGCTTCAAAGAGCGACTTTTGAGATACTTCGACGCAAGTTGAAGATAAGAGATCTATTTCAACATCTTGATTTGCTATGTTCTGAAGGAATGTTTCCAGAATCTTTATTTGATTCCGAAGGACAGATTGACAGTGAGGATATATTCTGTGCAAAATGCGGATCCAAAGACGTTTCTCTTCAGAATGATATTATACTCTGTGATGGTGCTTGTGACCGTGGGTTCCACCAGTTCTGTTTAGAACCACCACTCTTAAGTGAAGACATTCCACCTGACGACGAGGGTTGGCTATGCCCTGGATGTGACTGCAAAGTTGATTGCTTTGATTTGCTTAATGACTCTCAAGGAACAAATCTTTCTGTCACTGACAGCTGGGAGAAGGTATTTCCCGAAGCGGCTGCCGCAGCATCAGGACATAATCAGGATCACTCCCATGGACTTCCATCAGATGATTCTGATGATAATGATTATGACCCTGATGGTCCAGAAACAAATGATGAAGTTCCGGGAGAAGAATCAAGCTCTGATGAATCTGAATATGCATCTGCATCTGATGGACTTGATACTCCAAAAAATAATGACGAGCAGTACTTAGGACTTCCTTCTGATGATTCAGAAGATGATGACTATAATCCTGATGCTCCTGAAGTCATTGAGGATGATAAGAAGGAAAGTTCAAGTTCTGATTTTACATCTGACTCTGAGGATCTAGGAGCTGCTCTTGACGACAATAATATGTCTGCTGAAGATGTTGAAGGTCCCAAGTCAACGTCATTGGACGAAAGTGGGCCTCTTAGAGGCTCCAGCAAACAAAGTTCTAGACGTGGGCAAAAGAAACAACCTTTAAAAGATGAGGTATTATCTTTATTAGAGTTGGGTCCTGGCCAAGGTGGTGCAGCTCCTGTTTCTGGGAAAAGGCACATAGAAAGGTTGGACTACAAAAAGCTGCATGATGAGACATATGGAAATGTTCCTACTGATTCAAGTGATGATGAAGAGTGGAATGATACTGCTGCACCGAGGAAAAGGAAGAAAGGTACTGGACAAGCTCCTATGGTGTCACCAAATGGAGACTCGTCAAACATTAACAATGGAGTGATCACAAACGATATAAAACATGATCTAGATGAGAATGAGAATACTCCTAAAAGGGCTCCTCGCGGAAATAAAAATACTCCTAAGAGAGCTCGTCGAAAGTCAAAGGTTGAAGATACAAGTAATTTGTCAAACAAATCACGTAATGGCTCTACTCAGTCCGCTTCTACTAGTGAGAAAGGTGGATCGTCAAGATCAACATATCGAAAACTTGGGGAAGCTGTAACTCAGCGACTATCCAAATCGTTCAAGGAAAACCACTATCCAGACCGATCTATGAAGGAAAGTCTGGCCCAAGAACTAGGAATAATGGCTAAGCAGGTAAGCAAATGGTTTGAAAACGCTCGCCACTGTTTGAAAGTGAGTGTGGATAAGAGTGCTGCAGGAAATGGCACGCCCTTGCCTCAAACAAACGGAAAACAACTTGAACAAGATGGTACAACTTTTGGAGCTCAAAACAAGGAGTTACCCAGGACAGATGATCCTATGACAGGTTCCTCCAGCAGGGATATGAAAGATAGTGAATTGGTGACTCCGAAAAGCAGTAAACGAAAGGCTATTTCTCCAAACAATAGAAAGAGGGAGCGTAAATCAGATGATCTTGATCCAGAAAACGAGACACCAGAAACTAAAAGAAAAGGTACCCGACTTATGACTAGACGAAGGAAATCAATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

1068

Amino Acids

117.46

Weight (kDa)

4.96

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	526 - 577	2.8e-09	PHD-finger
Homeodomain	PF00046	914 - 957	3.7e-10	Homeodomain
Homeobox_KN	PF05920	927 - 957	2.7e-07	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	847, 2833
Acc65I	GGTACC	1 cut(s)	3164
AccB1I	GGYRCC	1 cut(s)	3164
AccII	CGCG	1 cut(s)	2589
AciI	CCGC	5 cut(s)	1587, 1823, 1830, 2589, 2685
AcoI	YGGCCR	1 cut(s)	2311
AcsI	RAATTY	5 cut(s)	226, 427, 776, 1030, 1301
AcuI	CTGAAG	8 cut(s)	279, 588, 723, 1436, 1533, 1592, 2094, 2193
AfiI	CCNNNNNNNGG	7 cut(s)	623, 941, 2225, 2315, 2336, 3014, 3027
AflII	CTTAAG	1 cut(s)	1681
AhlI	ACTAGT	1 cut(s)	2693
AjiI	CACGTC	1 cut(s)	2252
AjnI	CCWGG	4 cut(s)	927, 1723, 2308, 2993
Alw21I	GWGCWC	3 cut(s)	503, 2617, 2977
Alw26I	GTCTC	4 cut(s)	378, 2378, 2493, 3134
AlwNI	CAGNNNCTG	1 cut(s)	2330
AoxI	GGCC	3 cut(s)	2216, 2311, 2814
ApeKI	GCWGC	9 cut(s)	144, 872, 1826, 1832, 2144, 2324, 2374, 2441, 2903
ApoI	RAATTY	5 cut(s)	226, 427, 776, 1030, 1301
ArsI	GACNNNNNNTTYG	2 cut(s)	1021, 1053
Asp700I	GAANNNNTTC	2 cut(s)	1008, 1692
Asp718I	GGTACC	1 cut(s)	3164
AspLEI	GCGC	2 cut(s)	149, 1152
AspS9I	GGNCC	7 cut(s)	391, 1070, 1910, 2186, 2216, 2306, 2815
AsuC2I	CCSGG	1 cut(s)	1935
AsuHPI	GGTGA	5 cut(s)	569, 778, 1394, 2481, 3064
AvaII	GGWCC	5 cut(s)	391, 1070, 1910, 2186, 2306
BalI	TGGCCA	1 cut(s)	2313
BamHI	GGATCC	3 cut(s)	931, 1397, 1589
BanI	GGYRCC	1 cut(s)	3164
BanII	GRGCYC	3 cut(s)	2584, 2617, 2977
BbsI	GAAGAC	2 cut(s)	972, 1695
Bbv12I	GWGCWC	3 cut(s)	503, 2617, 2977
BbvI	GCAGC	9 cut(s)	131, 884, 1813, 1844, 2131, 2336, 2361, 2428, 2890
BccI	CCATC	6 cut(s)	1066, 1625, 1879, 1901, 1976, 2951
BceAI	ACGGC	1 cut(s)	499
BcgI	CGANNNNNNTGC	2 cut(s)	1808, 1842
BciT130I	CCWGG	4 cut(s)	929, 1725, 2310, 2995
BciVI	GTATCC	1 cut(s)	326
BclI	TGATCA	3 cut(s)	439, 607, 2526
BcnI	CCSGG	1 cut(s)	1935
BcoDI	GTCTC	4 cut(s)	378, 2378, 2493, 3134
BcuI	ACTAGT	1 cut(s)	2693
BfmI	CTRYAG	2 cut(s)	366, 2904
BfrI	CTTAAG	1 cut(s)	1681
BfuAI	ACCTGC	2 cut(s)	847, 2833
BfuI	GTATCC	1 cut(s)	326
BglII	AGATCT	3 cut(s)	463, 706, 1480
BlpI	GCTNAGC	1 cut(s)	2838
BmcAI	AGTACT	1 cut(s)	2018
Bme1390I	CCNGG	5 cut(s)	929, 1725, 1935, 2310, 2995
Bme18I	GGWCC	5 cut(s)	391, 1070, 1910, 2186, 2306
BmgBI	CACGTC	1 cut(s)	2252
BmgT120I	GGNCC	7 cut(s)	391, 1070, 1910, 2186, 2216, 2306, 2815
BmrFI	CCNGG	5 cut(s)	929, 1725, 1935, 2310, 2995
BmsI	GCATC	6 cut(s)	586, 1360, 1844, 1979, 1985, 2056
BpiI	GAAGAC	2 cut(s)	972, 1695
BpmI	CTGGAG	3 cut(s)	15, 2215, 3007
Bpu1102I	GCTNAGC	1 cut(s)	2838
BpuEI	CTTGAG	1 cut(s)	1755
BpuMI	CCSGG	1 cut(s)	1935
BsaAI	YACGTR	1 cut(s)	2666
BsaBI	GATNNNNATC	1 cut(s)	3126
BsaJI	CCNNGG	9 cut(s)	927, 1074, 1129, 1645, 1723, 1861, 2314, 2447, 2993
BsaWI	WCCGGW	1 cut(s)	1341
Bsc4I	CCNNNNNNNGG	7 cut(s)	623, 941, 2225, 2315, 2336, 3014, 3027
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	6 cut(s)	24, 324, 733, 946, 1657, 2473
Bse3DI	GCAATG	2 cut(s)	187, 637
Bse8I	GATNNNNATC	1 cut(s)	3126
BseBI	CCWGG	4 cut(s)	929, 1725, 2310, 2995
BseDI	CCNNGG	9 cut(s)	927, 1074, 1129, 1645, 1723, 1861, 2314, 2447, 2993
BseGI	GGATG	3 cut(s)	577, 1733, 2092
BseJI	GATNNNNATC	1 cut(s)	3126
BseLI	CCNNNNNNNGG	7 cut(s)	623, 941, 2225, 2315, 2336, 3014, 3027
BseMI	GCAATG	2 cut(s)	187, 637
BseMII	CTCAG	6 cut(s)	213, 603, 1316, 2121, 2693, 2765
BseNI	ACTGG	6 cut(s)	24, 324, 733, 946, 1657, 2473
BseRI	GAGGAG	2 cut(s)	300, 2574
BseXI	GCAGC	9 cut(s)	131, 884, 1813, 1844, 2131, 2336, 2361, 2428, 2890
BseYI	CCCAGC	2 cut(s)	878, 1800
BsgI	GTGCAG	2 cut(s)	2343, 2427
Bsh1236I	CGCG	1 cut(s)	2589
BshFI	GGCC	3 cut(s)	2218, 2313, 2816
BshNI	GGYRCC	1 cut(s)	3164
BsiHKAI	GWGCWC	3 cut(s)	503, 2617, 2977
BsiSI	CCGG	3 cut(s)	186, 1342, 1934
BslFI	GGGAC	2 cut(s)	261, 2172
BslI	CCNNNNNNNGG	7 cut(s)	623, 941, 2225, 2315, 2336, 3014, 3027
BsmAI	GTCTC	4 cut(s)	378, 2378, 2493, 3134
BsmFI	GGGAC	2 cut(s)	261, 2172
BsnI	GGCC	3 cut(s)	2218, 2313, 2816
Bsp1286I	GDGCHC	4 cut(s)	503, 2584, 2617, 2977
Bsp1407I	TGTACA	2 cut(s)	598, 793
Bsp1720I	GCTNAGC	1 cut(s)	2838
Bsp19I	CCATGG	1 cut(s)	1861
BspACI	CCGC	5 cut(s)	1587, 1823, 1830, 2589, 2685
BspANI	GGCC	3 cut(s)	2218, 2313, 2816
BspCNI	CTCAG	6 cut(s)	214, 602, 1317, 2122, 2692, 2764
BspFNI	CGCG	1 cut(s)	2589
BspMAI	CTGCAG	2 cut(s)	370, 2908
BspMI	ACCTGC	2 cut(s)	847, 2833
BspT107I	GGYRCC	1 cut(s)	3164
BspTI	CTTAAG	1 cut(s)	1681
BsrDI	GCAATG	2 cut(s)	187, 637
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	2 cut(s)	598, 793
BsrI	ACTGG	6 cut(s)	24, 324, 733, 946, 1657, 2473
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	9 cut(s)	927, 1074, 1129, 1645, 1723, 1861, 2314, 2447, 2993
BssT1I	CCWWGG	4 cut(s)	1074, 1129, 1861, 2314
Bst2UI	CCWGG	4 cut(s)	929, 1725, 2310, 2995
Bst4CI	ACNGT	4 cut(s)	195, 1562, 1646, 2876
Bst6I	CTCTTC	3 cut(s)	1256, 1611, 2418
BstAFI	CTTAAG	1 cut(s)	1681
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstAUI	TGTACA	2 cut(s)	598, 793
BstBAI	YACGTR	1 cut(s)	2666
BstC8I	GCNNGC	3 cut(s)	973, 2869, 2918
BstDSI	CCRYGG	2 cut(s)	1645, 1861
BstEII	GGTNACC	1 cut(s)	766
BstENI	CCTNNNNNAGG	4 cut(s)	2223, 2313, 3012, 3025
BstF5I	GGATG	3 cut(s)	577, 1733, 2092
BstFNI	CGCG	1 cut(s)	2589
BstHHI	GCGC	2 cut(s)	149, 1152
BstMAI	GTCTC	4 cut(s)	378, 2378, 2493, 3134
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 1829, 1832
BstNI	CCWGG	4 cut(s)	929, 1725, 2310, 2995
BstPI	GGTNACC	1 cut(s)	766
BstSCI	CCNGG	5 cut(s)	927, 1723, 1933, 2308, 2993
BstSFI	CTRYAG	2 cut(s)	366, 2904
BstUI	CGCG	1 cut(s)	2589
BstV1I	GCAGC	9 cut(s)	131, 884, 1813, 1844, 2131, 2336, 2361, 2428, 2890
BstV2I	GAAGAC	2 cut(s)	972, 1695
BstX2I	RGATCY	9 cut(s)	314, 463, 706, 931, 1177, 1397, 1480, 1589, 2134
BstYI	RGATCY	9 cut(s)	314, 463, 706, 931, 1177, 1397, 1480, 1589, 2134
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	2218, 2313, 2816
BtgI	CCRYGG	2 cut(s)	1645, 1861
BtrI	CACGTC	1 cut(s)	2252
BtsCI	GGATG	3 cut(s)	577, 1733, 2092
BtsI	GCAGTG	2 cut(s)	375, 1141
BtsIMutI	CAGTG	5 cut(s)	375, 1141, 1567, 1791, 2872
BveI	ACCTGC	2 cut(s)	847, 2833
Cac8I	GCNNGC	3 cut(s)	973, 2869, 2918
CaiI	CAGNNNCTG	1 cut(s)	2330
CfoI	GCGC	2 cut(s)	149, 1152
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	7 cut(s)	391, 1070, 1910, 2186, 2216, 2306, 2815
CseI	GACGC	2 cut(s)	977, 1470
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	8 cut(s)	50, 92, 385, 667, 741, 1862, 2378, 2546
DraI	TTTAAA	1 cut(s)	2274
EaeI	YGGCCR	1 cut(s)	2311
Eam1104I	CTCTTC	3 cut(s)	1256, 1611, 2418
EarI	CTCTTC	3 cut(s)	1256, 1611, 2418
Ecl136II	GAGCTC	2 cut(s)	2615, 2975
Eco130I	CCWWGG	4 cut(s)	1074, 1129, 1861, 2314
Eco24I	GRGCYC	3 cut(s)	2584, 2617, 2977
Eco47I	GGWCC	5 cut(s)	391, 1070, 1910, 2186, 2306
Eco53kI	GAGCTC	2 cut(s)	2615, 2975
Eco57I	CTGAAG	8 cut(s)	279, 588, 723, 1436, 1533, 1592, 2094, 2193
Eco91I	GGTNACC	1 cut(s)	766
EcoICRI	GAGCTC	2 cut(s)	2615, 2975
EcoNI	CCTNNNNNAGG	4 cut(s)	2223, 2313, 3012, 3025
EcoO109I	RGGNCCY	2 cut(s)	2186, 2306
EcoO65I	GGTNACC	1 cut(s)	766
EcoRI	GAATTC	2 cut(s)	226, 427
EcoRII	CCWGG	4 cut(s)	927, 1723, 2308, 2993
EcoT14I	CCWWGG	4 cut(s)	1074, 1129, 1861, 2314
EcoT22I	ATGCAT	1 cut(s)	1972
EcoT38I	GRGCYC	3 cut(s)	2584, 2617, 2977
ErhI	CCWWGG	4 cut(s)	1074, 1129, 1861, 2314
FaeI	CATG	8 cut(s)	53, 95, 388, 670, 744, 1865, 2381, 2549
FalI	AAGNNNNNCTT	4 cut(s)	810, 842, 1429, 1461
FaqI	GGGAC	2 cut(s)	261, 2172
FatI	CATG	8 cut(s)	49, 91, 384, 666, 740, 1861, 2377, 2545
FauNDI	CATATG	1 cut(s)	2389
FbaI	TGATCA	3 cut(s)	439, 607, 2526
FokI	GGATG	3 cut(s)	564, 1740, 2099
FriOI	GRGCYC	3 cut(s)	2584, 2617, 2977
GlaI	GCGC	2 cut(s)	148, 1151
GsaI	CCCAGC	2 cut(s)	882, 1804
GsuI	CTGGAG	3 cut(s)	15, 2215, 3007
HaeIII	GGCC	3 cut(s)	2218, 2313, 2816
HapII	CCGG	3 cut(s)	186, 1342, 1934
HgaI	GACGC	2 cut(s)	977, 1470
HhaI	GCGC	2 cut(s)	149, 1152
Hin1II	CATG	8 cut(s)	53, 95, 388, 670, 744, 1865, 2381, 2549
Hin6I	GCGC	2 cut(s)	147, 1150
HinP1I	GCGC	2 cut(s)	147, 1150
HincII	GTYRAC	1 cut(s)	2196
HindII	GTYRAC	1 cut(s)	2196
HpaII	CCGG	3 cut(s)	186, 1342, 1934
HphI	GGTGA	5 cut(s)	569, 778, 1394, 2481, 3064
Hpy166II	GTNNAC	9 cut(s)	122, 191, 475, 560, 599, 664, 794, 2196, 3071
Hpy8I	GTNNAC	9 cut(s)	122, 191, 475, 560, 599, 664, 794, 2196, 3071
Hpy99I	CGWCG	3 cut(s)	1464, 1709, 2622
HpyCH4III	ACNGT	4 cut(s)	195, 1562, 1646, 2876
HpyCH4IV	ACGT	5 cut(s)	37, 1599, 2198, 2251, 2665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 1829, 1832
HpySE526I	ACGT	5 cut(s)	37, 1599, 2198, 2251, 2665
Hsp92II	CATG	8 cut(s)	53, 95, 388, 670, 744, 1865, 2381, 2549
HspAI	GCGC	2 cut(s)	147, 1150
KpnI	GGTACC	1 cut(s)	3168
Ksp22I	TGATCA	3 cut(s)	439, 607, 2526
Lsp1109I	GCAGC	9 cut(s)	131, 884, 1813, 1844, 2131, 2336, 2361, 2428, 2890
LweI	GCATC	6 cut(s)	586, 1360, 1844, 1979, 1985, 2056
MaeII	ACGT	5 cut(s)	37, 1599, 2198, 2251, 2665
MfeI	CAATTG	2 cut(s)	242, 3195
MflI	RGATCY	9 cut(s)	314, 463, 706, 931, 1177, 1397, 1480, 1589, 2134
MhlI	GDGCHC	4 cut(s)	503, 2584, 2617, 2977
MlsI	TGGCCA	1 cut(s)	2313
MluNI	TGGCCA	1 cut(s)	2313
MlyI	GAGTC	9 cut(s)	209, 824, 988, 1296, 1320, 1760, 2120, 2495, 3049
MmeI	TCCRAC	3 cut(s)	498, 1370, 2340
Mox20I	TGGCCA	1 cut(s)	2313
Mph1103I	ATGCAT	1 cut(s)	1972
MroXI	GAANNNNTTC	2 cut(s)	1008, 1692
MscI	TGGCCA	1 cut(s)	2313
MseI	TTAA	6 cut(s)	678, 1187, 1682, 1761, 2273, 2514
MslI	CAYNNNNRTG	3 cut(s)	117, 849, 1860
Msp20I	TGGCCA	1 cut(s)	2313
MspA1I	CMGCKG	1 cut(s)	1800
MspCI	CTTAAG	1 cut(s)	1681
MspI	CCGG	3 cut(s)	186, 1342, 1934
MspR9I	CCNGG	5 cut(s)	929, 1725, 1935, 2310, 2995
MunI	CAATTG	2 cut(s)	242, 3195
MvaI	CCWGG	4 cut(s)	929, 1725, 2310, 2995
MvnI	CGCG	1 cut(s)	2589
MwoI	GCNNNNNNNGC	3 cut(s)	144, 1829, 1832
NciI	CCSGG	1 cut(s)	1935
NcoI	CCATGG	1 cut(s)	1861
NdeI	CATATG	1 cut(s)	2389
NlaIII	CATG	8 cut(s)	53, 95, 388, 670, 744, 1865, 2381, 2549
NsiI	ATGCAT	1 cut(s)	1972
PdmI	GAANNNNTTC	2 cut(s)	1008, 1692
PfoI	TCCNGGA	1 cut(s)	1933
PleI	GAGTC	9 cut(s)	208, 824, 987, 1295, 1319, 1760, 2120, 2495, 3049
PpsI	GAGTC	9 cut(s)	208, 824, 987, 1295, 1319, 1760, 2120, 2495, 3049
Ppu21I	YACGTR	1 cut(s)	2666
PpuMI	RGGWCCY	2 cut(s)	2186, 2306
Psp124BI	GAGCTC	2 cut(s)	2617, 2977
Psp5II	RGGWCCY	2 cut(s)	2186, 2306
Psp6I	CCWGG	4 cut(s)	927, 1723, 2308, 2993
PspEI	GGTNACC	1 cut(s)	766
PspFI	CCCAGC	2 cut(s)	878, 1800
PspGI	CCWGG	4 cut(s)	927, 1723, 2308, 2993
PspPI	GGNCC	7 cut(s)	391, 1070, 1910, 2186, 2216, 2306, 2815
PspPPI	RGGWCCY	2 cut(s)	2186, 2306
PstI	CTGCAG	2 cut(s)	370, 2908
PstNI	CAGNNNCTG	1 cut(s)	2330
PsuI	RGATCY	9 cut(s)	314, 463, 706, 931, 1177, 1397, 1480, 1589, 2134
PvuII	CAGCTG	1 cut(s)	1800
RseI	CAYNNNNRTG	3 cut(s)	117, 849, 1860
SacI	GAGCTC	2 cut(s)	2617, 2977
SaqAI	TTAA	6 cut(s)	678, 1187, 1682, 1761, 2273, 2514
Sau96I	GGNCC	7 cut(s)	391, 1070, 1910, 2186, 2216, 2306, 2815
ScaI	AGTACT	1 cut(s)	2018
SchI	GAGTC	9 cut(s)	209, 824, 988, 1296, 1320, 1760, 2120, 2495, 3049
ScrFI	CCNGG	5 cut(s)	929, 1725, 1935, 2310, 2995
SduI	GDGCHC	4 cut(s)	503, 2584, 2617, 2977
SfaNI	GCATC	6 cut(s)	586, 1360, 1844, 1979, 1985, 2056
SfcI	CTRYAG	2 cut(s)	366, 2904
SinI	GGWCC	5 cut(s)	391, 1070, 1910, 2186, 2306
SmiMI	CAYNNNNRTG	3 cut(s)	117, 849, 1860
SmlI	CTYRAG	2 cut(s)	1681, 1770
SmoI	CTYRAG	2 cut(s)	1681, 1770
SpeI	ACTAGT	1 cut(s)	2693
SsiI	CCGC	5 cut(s)	1587, 1823, 1830, 2589, 2685
SstI	GAGCTC	2 cut(s)	2617, 2977
StyD4I	CCNGG	5 cut(s)	927, 1723, 1933, 2308, 2993
StyI	CCWWGG	4 cut(s)	1074, 1129, 1861, 2314
TaaI	ACNGT	4 cut(s)	195, 1562, 1646, 2876
TaiI	ACGT	5 cut(s)	40, 1602, 2201, 2254, 2668
TaqI	TCGA	4 cut(s)	902, 1459, 2620, 2728
TaqII	GACCGA	1 cut(s)	2808
TatI	WGTACW	3 cut(s)	598, 793, 2016
TauI	GCSGC	2 cut(s)	1826, 1832
Tru1I	TTAA	6 cut(s)	678, 1187, 1682, 1761, 2273, 2514
Tru9I	TTAA	6 cut(s)	678, 1187, 1682, 1761, 2273, 2514
TscAI	CASTG	5 cut(s)	375, 1141, 1567, 1798, 2879
TseI	GCWGC	9 cut(s)	144, 872, 1826, 1832, 2144, 2324, 2374, 2441, 2903
TspGWI	ACGGA	1 cut(s)	2952
TspRI	CASTG	5 cut(s)	375, 1141, 1567, 1798, 2879
Vha464I	CTTAAG	1 cut(s)	1681
VpaK11BI	GGWCC	5 cut(s)	391, 1070, 1910, 2186, 2306
XagI	CCTNNNNNAGG	4 cut(s)	2223, 2313, 3012, 3025
XapI	RAATTY	5 cut(s)	226, 427, 776, 1030, 1301
XbaI	TCTAGA	2 cut(s)	2246, 2551
XmnI	GAANNNNTTC	2 cut(s)	1008, 1692
ZrmI	AGTACT	1 cut(s)	2018
Zsp2I	ATGCAT	1 cut(s)	1972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.