Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Reverse (-)

12202311 .. 12206602

Gene Structure 4292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2583 bp

ATGGCCGATACTGCACAACTGGATATTCCTCCAGAATGTGATAGCAGTCATGCAACAAAATGCCAAGAAGAAGGTACGTCAGGACAGATGCATGAAATTGGTTCTGAAAGACAATGTAGTGAACCAACCAAACAAAACATTGGGTGCATCATTGTCCAGAATGAGCTACGGGAAATCTGCAATGCTGGTGAACAATCACAGTCATTATCTGAAAATGTGACTGAGAATTCTCATCTTGAACAATTGGGACTGCCTTCTGAAGACGTGAGCAAGAGTAGTCAAAGTGGAGCTGAAAATGTTTTTGCAAAACAGGGATATCAATCCATTTCTGGATATAAACAAGATGAATCGTTACAAACCACAGCTGCAGTGTTTCCCTGTACTATGAAGGACAAACTGCAATCATTTTCTGGAAACGTGAGCGAGAATTCTCTTATTGATCAAATGGAAATGCCTTGTGAAGATCTGGGAGTGAATAGTCCAACCCATAAAAGTTCATGCTCTGGACAATTGCCATTGGAACAGAAAAATGATTGTGGTTTTGGAACTTCATCTAGTGACCTAGCTGAAGAAAAGCATCCTTCTGCCTCAGATCATGTACAAAATGATCAGTTACAAGCAATTATTCAAGTACCCATCTGTGGTAGCAATGAACACTTGCAGTCATCTAGTGAAAATGTGAACAGGACTTCTCTTAACAAACAAGCAGGACTGCCTCCTGAAGATCTGTCAAAGACTTGTCAGACTGACAAAGTTTCATGCTGTAACCAGACTACATTACAGGAGATCAATGAATTTGGGTGTGGAAGTGTACACGGTGAACCAGAAACACAAAAAGATCAGCTTGACTCTGTACCTGTTCATAATAATGAAGTTACAACTACTGAAGTAGCACCCAGCTCTATTGTTTTTGAACAATCAAGGCCTTGTATTGAAGCTATGACCCAGGATTCTCCTACTGGACATTTGGAACTACCCCTTGAAGATGCAAGCAAGTGTCCTCCTATTGATAAAGAAATGGAACCACTTCCAGCAGATGTGACCCAAAATTCTAGTCTTGAAAAGACGGAAAAGCCATCTAAGAATGCACCGAAGGATAAGCAAAATCCAAAATCAAGAAAGAAGAAATATGTGTCAAAATCTTCCGTTGGCAGTGACAGAGTTCTGCGCTCAAAGACAGGGGAGAAGACTAAAAATCCTAAATTAAGTAATGATGTTTCAACTCTTGAATCAAGTAATAGTGTTGCAAATCCAAGTAAGGTTGAAGGCAAAAGAAGGAAGAAGAGAAAGAAGAGACAACGGAATAAAGTCATAGATGATGAATTTTCAAGAGTCAGGAAACATCTGAGATACTTGCTGAACCGGATAAGCTATGAGAAATCTCTGATTGATGCTTACTCCGGTGAAGGTTGGAAAGGATCCAGCCTAGAAAAACTGAAGCCAGAGAAGGAGCTTCAAAGAGCGACTTCTGAAATACTTCGACGCAAGTTGAAGATAAGAGATCTATTTCAACGTCTCGATTCGCTATGTTCTGAAGGAATGTTTCCAGAATCTTTATTTGATTCCGAAGGACAGATTGACAGTGAGGATATATTCTGTGCAAAATGTGGATCCAAGGACGTTTCTCTTCAGAATGATATTATACTCTGTGATGGTGCTTGTGACCGTGGGTTCCACCAGTTCTGTTTAGAACCATCACTATTAAGTGAAGACATTCCACCCGACGACGAGGGTTGGCTATGCCCTGGATGTGACTGCAAAGTTGATTGCTTTGATTTGCTTAATGACTCTCAAGGAACAGATCTTTCTGTTGCCGACAGCTGGGAGAAGGTATTTCCTGAAGTGGCTGCTGCAGCATCAGGACATAATCAGGAGCACACCCATGGACTTCCATCAGATGATTCTGATGATAATGATTATGACCCTGATGGTCCAGAAACAGATGATGAAGTTCAGGGAGAAGAATCAAGTTCTGATGATGAATCTAAATATGCATCTGCATCTGATGGACTAGAGACTCCAAAAAATAATGACAAGCAGTATTTAGGACTTCCTTCTGACGATTCAGAGGATGATGACTATAATCCTGATGCTCCGGAAGTCACTAACGAACTTAAGAAGGAAAGTTCAAGTTCTGATTTTACATCTGACTCTGAGGATCTTGGAGCTTCTCTTGACGACAATAATATGTCTGCCGAAGATGTTGAAAGTCCCAAGTCAATGTCATTGGACGAAAGTGGGCCTCTTGGAGGCTCTGGCAAACAAAGTTCTAGACATGGGCAAAAGAAACAACCTTTAAAAGATGAGTTATTATCTTTATTAGAGTCAGGTCCTGGCCAAGGTGGTGCAGCTCCTGTTTCTGGGAAGAGGCACATAGAAAGGTTGAACTACAAAAAGCTGCATGATGAGACATATGGAAATGTTCGTACTGATTCAAGTGATAATGAAGAGTGGAATGATACTGCTGGACCGAGGAAAAGGAAGAAAGTTACTACACAAGCTCCTACGATGTCACCAAATAGAGACTCGTCAAACGTTAAGAATGTAATGATCACCAACAATATAAAACATCGATCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

861

Amino Acids

94.43

Weight (kDa)

4.76

Isoelectric Point (pI)

61.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	533 - 584	5.8e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	2095
AclI	AACGTT	1 cut(s)	2535
AclWI	GGATC	6 cut(s)	1413, 1426, 1605, 1618, 2166, 2568
AcoI	YGGCCR	2 cut(s)	3, 2335
AcsI	RAATTY	5 cut(s)	226, 427, 794, 1048, 1322
AcuI	CTGAAG	8 cut(s)	279, 588, 741, 906, 1457, 1554, 1613, 1860
AfaI	GTAC	7 cut(s)	76, 382, 600, 633, 813, 855, 2428
AfiI	CCNNNNNNNGG	5 cut(s)	641, 1821, 2249, 2339, 2360
AflII	CTTAAG	1 cut(s)	2114
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	945, 1744, 2332
Alw21I	GWGCWC	1 cut(s)	1878
Alw26I	GTCTC	5 cut(s)	1288, 1520, 2009, 2402, 2517
AlwI	GGATC	6 cut(s)	1413, 1426, 1605, 1618, 2166, 2568
AlwNI	CAGNNNCTG	2 cut(s)	2333, 2354
Aor13HI	TCCGGA	1 cut(s)	2095
AoxI	GGCC	4 cut(s)	3, 923, 2240, 2335
ApeKI	GCWGC	6 cut(s)	365, 1847, 1850, 1853, 2348, 2398
ApoI	RAATTY	5 cut(s)	226, 427, 794, 1048, 1322
ArsI	GACNNNNNNTTYG	2 cut(s)	1039, 1071
Asp700I	GAANNNNTTC	3 cut(s)	1026, 1476, 1713
AspLEI	GCGC	1 cut(s)	1170
AspS9I	GGNCC	4 cut(s)	1931, 2240, 2330, 2468
AsuHPI	GGTGA	5 cut(s)	200, 830, 1415, 2505, 2545
AvaII	GGWCC	3 cut(s)	1931, 2330, 2468
BalI	TGGCCA	1 cut(s)	2337
BamHI	GGATCC	2 cut(s)	1418, 1610
BbsI	GAAGAC	3 cut(s)	267, 1193, 1716
Bbv12I	GWGCWC	1 cut(s)	1878
BbvI	GCAGC	6 cut(s)	352, 1834, 1837, 1865, 2360, 2385
BccI	CCATC	7 cut(s)	644, 1084, 1646, 1702, 1900, 1922, 2000
BciT130I	CCWGG	3 cut(s)	947, 1746, 2334
BclI	TGATCA	3 cut(s)	439, 607, 2550
BcoDI	GTCTC	5 cut(s)	1288, 1520, 2009, 2402, 2517
BfaI	CTAG	7 cut(s)	555, 563, 669, 1053, 1427, 2012, 2271
BfmI	CTRYAG	2 cut(s)	366, 1851
BfrI	CTTAAG	1 cut(s)	2114
BglII	AGATCT	4 cut(s)	463, 724, 1501, 1801
BisI	GCNGC	6 cut(s)	366, 1848, 1851, 1854, 2349, 2399
BlsI	GCNGC	6 cut(s)	367, 1849, 1852, 1855, 2350, 2400
Bme1390I	CCNGG	3 cut(s)	947, 1746, 2334
Bme18I	GGWCC	3 cut(s)	1931, 2330, 2468
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	4 cut(s)	1931, 2240, 2330, 2468
BmiI	GGNNCC	4 cut(s)	1023, 1420, 1612, 1673
BmrFI	CCNGG	3 cut(s)	947, 1746, 2334
BmsI	GCATC	9 cut(s)	78, 156, 586, 976, 1381, 1865, 2003, 2009, 2080
BpiI	GAAGAC	3 cut(s)	267, 1193, 1716
BpmI	CTGGAG	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	1776
Bsa29I	ATCGAT	1 cut(s)	2572
BsaBI	GATNNNNATC	1 cut(s)	319
BsaJI	CCNNGG	7 cut(s)	945, 1614, 1666, 1744, 1882, 2338, 2471
BsaWI	WCCGGW	3 cut(s)	1362, 1400, 2095
BsaXI	ACNNNNNCTCC	2 cut(s)	2485, 2515
Bsc4I	CCNNNNNNNGG	5 cut(s)	641, 1821, 2249, 2339, 2360
Bse1I	ACTGG	3 cut(s)	24, 964, 1678
Bse3DI	GCAATG	2 cut(s)	187, 655
Bse8I	GATNNNNATC	1 cut(s)	319
BseAI	TCCGGA	1 cut(s)	2095
BseBI	CCWGG	3 cut(s)	947, 1746, 2334
BseCI	ATCGAT	1 cut(s)	2572
BseDI	CCNNGG	7 cut(s)	945, 1614, 1666, 1744, 1882, 2338, 2471
BseGI	GGATG	3 cut(s)	577, 1754, 2077
BseJI	GATNNNNATC	1 cut(s)	319
BseLI	CCNNNNNNNGG	5 cut(s)	641, 1821, 2249, 2339, 2360
BseMI	GCAATG	2 cut(s)	187, 655
BseMII	CTCAG	4 cut(s)	213, 603, 1337, 2145
BseNI	ACTGG	3 cut(s)	24, 964, 1678
BseXI	GCAGC	6 cut(s)	352, 1834, 1837, 1865, 2360, 2385
BseYI	CCCAGC	2 cut(s)	896, 1821
BsgI	GTGCAG	1 cut(s)	2367
BshFI	GGCC	4 cut(s)	5, 925, 2242, 2337
BshVI	ATCGAT	1 cut(s)	2572
BsiHKAI	GWGCWC	1 cut(s)	1878
BsiSI	CCGG	3 cut(s)	1363, 1401, 2096
BslFI	GGGAC	2 cut(s)	261, 2196
BslI	CCNNNNNNNGG	5 cut(s)	641, 1821, 2249, 2339, 2360
BsmAI	GTCTC	5 cut(s)	1288, 1520, 2009, 2402, 2517
BsmBI	CGTCTC	1 cut(s)	1520
BsmFI	GGGAC	2 cut(s)	261, 2196
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	4 cut(s)	5, 925, 2242, 2337
Bsp1286I	GDGCHC	1 cut(s)	1878
Bsp13I	TCCGGA	1 cut(s)	2095
Bsp1407I	TGTACA	2 cut(s)	598, 811
Bsp19I	CCATGG	1 cut(s)	1882
BspANI	GGCC	4 cut(s)	5, 925, 2242, 2337
BspCNI	CTCAG	4 cut(s)	214, 602, 1338, 2146
BspDI	ATCGAT	1 cut(s)	2572
BspEI	TCCGGA	1 cut(s)	2095
BspLI	GGNNCC	4 cut(s)	1023, 1420, 1612, 1673
BspMAI	CTGCAG	2 cut(s)	370, 1855
BspPI	GGATC	6 cut(s)	1413, 1426, 1605, 1618, 2166, 2568
BspTI	CTTAAG	1 cut(s)	2114
BsrDI	GCAATG	2 cut(s)	187, 655
BsrGI	TGTACA	2 cut(s)	598, 811
BsrI	ACTGG	3 cut(s)	24, 964, 1678
BssECI	CCNNGG	7 cut(s)	945, 1614, 1666, 1744, 1882, 2338, 2471
BssT1I	CCWWGG	3 cut(s)	1614, 1882, 2338
Bst2UI	CCWGG	3 cut(s)	947, 1746, 2334
Bst4CI	ACNGT	4 cut(s)	201, 818, 1583, 1667
Bst6I	CTCTTC	5 cut(s)	1277, 1286, 1632, 2360, 2442
BstAFI	CTTAAG	1 cut(s)	2114
BstAUI	TGTACA	2 cut(s)	598, 811
BstC8I	GCNNGC	1 cut(s)	991
BstDEI	CTNAG	5 cut(s)	222, 589, 1080, 1346, 2154
BstDSI	CCRYGG	2 cut(s)	1666, 1882
BstENI	CCTNNNNNAGG	2 cut(s)	2247, 2337
BstF5I	GGATG	3 cut(s)	577, 1754, 2077
BstHHI	GCGC	1 cut(s)	1170
BstMAI	GTCTC	5 cut(s)	1288, 1520, 2009, 2402, 2517
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 1853
BstNI	CCWGG	3 cut(s)	947, 1746, 2334
BstSCI	CCNGG	3 cut(s)	945, 1744, 2332
BstSFI	CTRYAG	2 cut(s)	366, 1851
BstV1I	GCAGC	6 cut(s)	352, 1834, 1837, 1865, 2360, 2385
BstV2I	GAAGAC	3 cut(s)	267, 1193, 1716
BstX2I	RGATCY	7 cut(s)	463, 724, 1418, 1501, 1610, 1801, 2158
BstYI	RGATCY	7 cut(s)	463, 724, 1418, 1501, 1610, 1801, 2158
Bsu15I	ATCGAT	1 cut(s)	2572
BsuRI	GGCC	4 cut(s)	5, 925, 2242, 2337
BsuTUI	ATCGAT	1 cut(s)	2572
BtgI	CCRYGG	2 cut(s)	1666, 1882
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	577, 1754, 2077
BtsI	GCAGTG	2 cut(s)	375, 1159
BtsIMutI	CAGTG	3 cut(s)	375, 1159, 1588
Cac8I	GCNNGC	1 cut(s)	991
CaiI	CAGNNNCTG	2 cut(s)	2333, 2354
CfoI	GCGC	1 cut(s)	1170
Cfr13I	GGNCC	4 cut(s)	1931, 2240, 2330, 2468
ClaI	ATCGAT	1 cut(s)	2572
CseI	GACGC	1 cut(s)	1491
Csp6I	GTAC	7 cut(s)	75, 381, 599, 632, 812, 854, 2427
CviAII	CATG	8 cut(s)	50, 92, 498, 596, 759, 1883, 2276, 2402
CviQI	GTAC	7 cut(s)	75, 381, 599, 632, 812, 854, 2427
DdeI	CTNAG	5 cut(s)	222, 589, 1080, 1346, 2154
DraI	TTTAAA	1 cut(s)	2298
EaeI	YGGCCR	2 cut(s)	3, 2335
Eam1104I	CTCTTC	5 cut(s)	1277, 1286, 1632, 2360, 2442
EarI	CTCTTC	5 cut(s)	1277, 1286, 1632, 2360, 2442
Eco130I	CCWWGG	3 cut(s)	1614, 1882, 2338
Eco147I	AGGCCT	1 cut(s)	925
Eco32I	GATATC	1 cut(s)	317
Eco47I	GGWCC	3 cut(s)	1931, 2330, 2468
Eco57I	CTGAAG	8 cut(s)	279, 588, 741, 906, 1457, 1554, 1613, 1860
EcoNI	CCTNNNNNAGG	2 cut(s)	2247, 2337
EcoO109I	RGGNCCY	1 cut(s)	2330
EcoRI	GAATTC	2 cut(s)	226, 427
EcoRII	CCWGG	3 cut(s)	945, 1744, 2332
EcoRV	GATATC	1 cut(s)	317
EcoT14I	CCWWGG	3 cut(s)	1614, 1882, 2338
EcoT22I	ATGCAT	2 cut(s)	93, 1996
ErhI	CCWWGG	3 cut(s)	1614, 1882, 2338
Esp3I	CGTCTC	1 cut(s)	1520
FaeI	CATG	8 cut(s)	53, 95, 501, 599, 762, 1886, 2279, 2405
FalI	AAGNNNNNCTT	4 cut(s)	828, 860, 1450, 1482
FaqI	GGGAC	2 cut(s)	261, 2196
FatI	CATG	8 cut(s)	49, 91, 497, 595, 758, 1882, 2275, 2401
FauNDI	CATATG	1 cut(s)	2413
FbaI	TGATCA	3 cut(s)	439, 607, 2550
Fnu4HI	GCNGC	6 cut(s)	366, 1848, 1851, 1854, 2349, 2399
FokI	GGATG	3 cut(s)	564, 1761, 2084
Fsp4HI	GCNGC	6 cut(s)	366, 1848, 1851, 1854, 2349, 2399
FspBI	CTAG	7 cut(s)	555, 563, 669, 1053, 1427, 2012, 2271
GlaI	GCGC	1 cut(s)	1169
GluI	GCNGC	6 cut(s)	366, 1848, 1851, 1854, 2349, 2399
GsaI	CCCAGC	2 cut(s)	900, 1825
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	4 cut(s)	5, 925, 2242, 2337
HapII	CCGG	3 cut(s)	1363, 1401, 2096
HgaI	GACGC	1 cut(s)	1491
HhaI	GCGC	1 cut(s)	1170
Hin1II	CATG	8 cut(s)	53, 95, 501, 599, 762, 1886, 2279, 2405
Hin6I	GCGC	1 cut(s)	1168
HinP1I	GCGC	1 cut(s)	1168
HpaII	CCGG	3 cut(s)	1363, 1401, 2096
HphI	GGTGA	5 cut(s)	200, 830, 1415, 2505, 2545
Hpy166II	GTNNAC	6 cut(s)	122, 191, 682, 812, 814, 821
Hpy8I	GTNNAC	6 cut(s)	122, 191, 682, 812, 814, 821
Hpy99I	CGWCG	3 cut(s)	1485, 1727, 1730
HpyCH4III	ACNGT	4 cut(s)	201, 818, 1583, 1667
HpyCH4IV	ACGT	6 cut(s)	77, 264, 417, 1513, 1620, 2535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 1853
HpyF3I	CTNAG	5 cut(s)	222, 589, 1080, 1346, 2154
HpySE526I	ACGT	6 cut(s)	77, 264, 417, 1513, 1620, 2535
Hsp92II	CATG	8 cut(s)	53, 95, 501, 599, 762, 1886, 2279, 2405
HspAI	GCGC	1 cut(s)	1168
Kpn2I	TCCGGA	1 cut(s)	2095
Ksp22I	TGATCA	3 cut(s)	439, 607, 2550
LmnI	GCTCC	7 cut(s)	287, 1450, 1873, 2098, 2165, 2356, 2506
Lsp1109I	GCAGC	6 cut(s)	352, 1834, 1837, 1865, 2360, 2385
LweI	GCATC	9 cut(s)	78, 156, 586, 976, 1381, 1865, 2003, 2009, 2080
MaeI	CTAG	7 cut(s)	555, 563, 669, 1053, 1427, 2012, 2271
MaeII	ACGT	6 cut(s)	77, 264, 417, 1513, 1620, 2535
MfeI	CAATTG	2 cut(s)	242, 509
MflI	RGATCY	7 cut(s)	463, 724, 1418, 1501, 1610, 1801, 2158
MhlI	GDGCHC	1 cut(s)	1878
MlsI	TGGCCA	1 cut(s)	2337
MluNI	TGGCCA	1 cut(s)	2337
MlyI	GAGTC	7 cut(s)	842, 1341, 1781, 2011, 2144, 2333, 2519
MmeI	TCCRAC	2 cut(s)	506, 1391
Mox20I	TGGCCA	1 cut(s)	2337
Mph1103I	ATGCAT	2 cut(s)	93, 1996
MroI	TCCGGA	1 cut(s)	2095
MroXI	GAANNNNTTC	3 cut(s)	1026, 1476, 1713
MscI	TGGCCA	1 cut(s)	2337
MseI	TTAA	7 cut(s)	696, 1205, 1703, 1782, 2115, 2297, 2538
MslI	CAYNNNNRTG	2 cut(s)	867, 1881
Msp20I	TGGCCA	1 cut(s)	2337
MspA1I	CMGCKG	2 cut(s)	365, 1821
MspCI	CTTAAG	1 cut(s)	2114
MspI	CCGG	3 cut(s)	1363, 1401, 2096
MspR9I	CCNGG	3 cut(s)	947, 1746, 2334
MunI	CAATTG	2 cut(s)	242, 509
Mva1269I	GAATGC	1 cut(s)	1090
MvaI	CCWGG	3 cut(s)	947, 1746, 2334
MwoI	GCNNNNNNNGC	2 cut(s)	11, 1853
NcoI	CCATGG	1 cut(s)	1882
NdeI	CATATG	1 cut(s)	2413
NlaIII	CATG	8 cut(s)	53, 95, 501, 599, 762, 1886, 2279, 2405
NlaIV	GGNNCC	4 cut(s)	1023, 1420, 1612, 1673
NmuCI	GTSAC	8 cut(s)	217, 557, 1039, 1154, 1661, 1751, 2101, 2511
NsiI	ATGCAT	2 cut(s)	93, 1996
PceI	AGGCCT	1 cut(s)	925
PctI	GAATGC	1 cut(s)	1090
PdmI	GAANNNNTTC	3 cut(s)	1026, 1476, 1713
PkrI	GCNGC	6 cut(s)	367, 1849, 1852, 1855, 2350, 2400
PleI	GAGTC	7 cut(s)	842, 1340, 1781, 2011, 2144, 2332, 2519
PpsI	GAGTC	7 cut(s)	842, 1340, 1781, 2011, 2144, 2332, 2519
PpuMI	RGGWCCY	1 cut(s)	2330
Psp1406I	AACGTT	1 cut(s)	2535
Psp5II	RGGWCCY	1 cut(s)	2330
Psp6I	CCWGG	3 cut(s)	945, 1744, 2332
PspFI	CCCAGC	2 cut(s)	896, 1821
PspGI	CCWGG	3 cut(s)	945, 1744, 2332
PspN4I	GGNNCC	4 cut(s)	1023, 1420, 1612, 1673
PspPI	GGNCC	4 cut(s)	1931, 2240, 2330, 2468
PspPPI	RGGWCCY	1 cut(s)	2330
PstI	CTGCAG	2 cut(s)	370, 1855
PstNI	CAGNNNCTG	2 cut(s)	2333, 2354
PsuI	RGATCY	7 cut(s)	463, 724, 1418, 1501, 1610, 1801, 2158
PvuII	CAGCTG	2 cut(s)	365, 1821
RsaI	GTAC	7 cut(s)	76, 382, 600, 633, 813, 855, 2428
RsaNI	GTAC	7 cut(s)	75, 381, 599, 632, 812, 854, 2427
RseI	CAYNNNNRTG	2 cut(s)	867, 1881
SaqAI	TTAA	7 cut(s)	696, 1205, 1703, 1782, 2115, 2297, 2538
SatI	GCNGC	6 cut(s)	366, 1848, 1851, 1854, 2349, 2399
Sau96I	GGNCC	4 cut(s)	1931, 2240, 2330, 2468
SchI	GAGTC	7 cut(s)	842, 1341, 1781, 2011, 2144, 2333, 2519
ScrFI	CCNGG	3 cut(s)	947, 1746, 2334
SduI	GDGCHC	1 cut(s)	1878
SfaNI	GCATC	9 cut(s)	78, 156, 586, 976, 1381, 1865, 2003, 2009, 2080
SfcI	CTRYAG	2 cut(s)	366, 1851
SinI	GGWCC	3 cut(s)	1931, 2330, 2468
SmiMI	CAYNNNNRTG	2 cut(s)	867, 1881
SmlI	CTYRAG	2 cut(s)	1791, 2114
SmoI	CTYRAG	2 cut(s)	1791, 2114
SseBI	AGGCCT	1 cut(s)	925
SspMI	CTAG	7 cut(s)	555, 563, 669, 1053, 1427, 2012, 2271
StuI	AGGCCT	1 cut(s)	925
StyD4I	CCNGG	3 cut(s)	945, 1744, 2332
StyI	CCWWGG	3 cut(s)	1614, 1882, 2338
TaaI	ACNGT	4 cut(s)	201, 818, 1583, 1667
TaiI	ACGT	6 cut(s)	80, 267, 420, 1516, 1623, 2538
TaqI	TCGA	3 cut(s)	1480, 1518, 2572
TaqII	GACCGA	1 cut(s)	2485
TatI	WGTACW	3 cut(s)	380, 598, 811
Tru1I	TTAA	7 cut(s)	696, 1205, 1703, 1782, 2115, 2297, 2538
Tru9I	TTAA	7 cut(s)	696, 1205, 1703, 1782, 2115, 2297, 2538
TscAI	CASTG	3 cut(s)	375, 1159, 1588
TseFI	GTSAC	8 cut(s)	217, 557, 1039, 1154, 1661, 1751, 2101, 2511
TseI	GCWGC	6 cut(s)	365, 1847, 1850, 1853, 2348, 2398
Tsp45I	GTSAC	8 cut(s)	217, 557, 1039, 1154, 1661, 1751, 2101, 2511
TspGWI	ACGGA	3 cut(s)	1082, 1135, 1315
TspRI	CASTG	3 cut(s)	375, 1159, 1588
Vha464I	CTTAAG	1 cut(s)	2114
VpaK11BI	GGWCC	3 cut(s)	1931, 2330, 2468
XagI	CCTNNNNNAGG	2 cut(s)	2247, 2337
XapI	RAATTY	5 cut(s)	226, 427, 794, 1048, 1322
XbaI	TCTAGA	1 cut(s)	2270
XmnI	GAANNNNTTC	3 cut(s)	1026, 1476, 1713
XspI	CTAG	7 cut(s)	555, 563, 669, 1053, 1427, 2012, 2271
Zsp2I	ATGCAT	2 cut(s)	93, 1996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.