Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Reverse (-)

61252376 .. 61260558

Gene Structure 8183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3621 bp

ATGGCTGATGCTGCACCGCCGGATATTCCTCTGGAATGTGTGAGCAGTCAAACTGCAAAATGCCAAGAAGAAAGTACGTCAGGACAGATACATGACATTGGTTCAGAAAGCGGATATAGTGAACCAACCAAGCAAAAGATTGGTTGTGATGTTCTTCAAAATGAGCTACAGGAAATCTGCAACGCATCCAATGATGGTGATCAATCACAGTCATTTGGAAATTTGACCGAGAAGCCTCACCCTGAGCAATTGGGACTGCCTCCTGAAGATGTGAGCAACGATAGTCAAGTTGCTGCTGTAAACATTCTTACCAAATCAGCACACAGACATCCTTCCACCTCTGAAAACATTCAAAATGGACCATTACAAATCAGAACAGCATTATCTAGTTGTACTACCAGTGACCACTTGCAATCATTTTCTGGCAATGTGACCAACAATTCTCTTGCTGAAAAATTGGAACTGCCTTGTGAAGAGCCTCATGAAGATCTGGGTTGTCAGACTGGAAAAACTTCATGCTCTGAACAGTTTTCACTGGAACAGAGAAATGATTTTGGTTTCGCAACAAGAGAAGAAAAGCAGCATATCGGCTCTAATATTGTTCAAAATGAAATCTTACAAACTATTATTCCAGTATCCAGCTGTGGCAATGAACAATTGCAGTTCATTAGTGAACCTGTGAACACGACTTTTCCTAATGAACAAGCAGGAGTGCCTCTTGAAGATGTGAGCAAGACATTGGAACCGACAAATAATTTTGGTTTTGAAACTCAATCTAGTGAACTAGCAGAAGACAAGCAGCATTTTAGCTCTGGTGTTCCACAAAACGAAGGGTTACAAAGCTGTGATGGTAATGAACCATTGCAGTCATTTTGTGAAAATATGAACACAAGTTCTCTTAATGAACAAGCGGTACTGCCTTGTGAAGGTGTGAAAAAGACTTTGGAACAGACAAATAATGTGAATTCTGGAACTTCATATAGTGAACCAGCAGAAGAGAACCAGAATTTGGGCTCTGATTTTGTACAAGATGAACCATTACAAACTATTATCCCAGTAGCCAGCTGTGGTGGCAACGAACAGTTGCAGGTGGTTAATGAAGTTGTGAGTGTTACTTCTCTTAGTGAACAAGCGGGACTGCCTCTTGAAGCTGTGAGCAAGACTTGTCAGACTGAAAAACTTTCATGCTATCTCCAAACTGCATCGGATCAGATCAATGAATCTGGTTCAGGAAGTGTACCTTGTGAACCACAGGAACAGAGAGATCAGCTTGGCCTTTTACCTTCCCAAAATGATCAAGTTAAAACTTGCACTGCAGTATCCAGCTCCAGTGTTTCTGAACAATCAGGCCCTTCTGTTGAAGAGATGAAGAATTCTGTTATTGGGCATTTGGAACCACCCCTTGAAGATGCAAGCAAGGACCATACTGATGAACTAATCAAACCACACACGAACAATGCGCCCCAAAATTCTAGTCTTGAGCCATCAGAAACAGCGTCTGAGAATGCATCTAAAATTTCTAGCCAGTTCAGTTGCAAGGACAAGCGAAATTCAAGTTCAAGACAAAAGTCGAGATCTTTGGTAAGCAGTGACAGAGTTCTGCGCTCAAGGACGGCGGAGAAACCTGAAGCTCCTGAATTAAGTAATAATGTTGCAACACTTGAATCAAGTAACAGTGTTGCTAATGTAAGCAATGAGAAAGAGGGAAAAAGGAAGAAGAGAAGGAAGAAACACAGGGAAAGAGTTGCAGCTGATGAATTTTCAAGGATCAGGTCACATCTGAGATATTTTCTGAACCGGATAAACTATGAGAAATCTCTTATTGATGCTTATTCTGGTGAAGGTTGGAAAGGAAACAGCCTAGAAAAAATAAGGCCAGAGAAGGAGCTTCAACGAGCTACTTCTGAAATACTTCGACGCAAATTGAAAATAAGAGATCTTTTTCAACGTCTTGATTCACTATGTGCCGAAGGAATGTTTCCAGAATCTTTATTTGATTCAGACGGACAGATTGACAGTGAGGATATATTCTGCGCAAAATGTGGGTCCAAGGATGTGTGTGCTGATAATGACATCATACTCTGTGATGGGGCTTGTGACCGTGGATTCCACCAGTATTGTCTGGAACCGCCTCTATTGAGTGAAGAAATTCCGCCTGATGATGAGGGTTGGTTATGCCCTGGATGTGACTGCAAAGTTGATTGCATTGATTTGCTTAATGACTCTCAAGGAACAGATATCTCTATTACTGACAGCTGGGAGAAGGTATTTCCTGAAGCAGCTGTTGCAGCATCAGCAGGACAGAATCAGGAGAACAACCAGGGACTTCTATCAGATGATTCTGATGATAATGATTATGACCCTGATGGTCCAGAGACGGATGAGGAAGTTGGAGAAGCAGAATCAAGTTCCGATGAATCTGAATATGCATCAGCATCTGATGGACTTGAGACCCCAAAAACTAATGATGAGCAGTACTTAGGGCTTCCTTCTGATGATTCAGAGGATGATGATTTCAATCCCGCTGCTCCAGATCCCACAGAGGATGTTAAGCAGGACAGTTCAAGCTCTGATTTTACATCTGACTCTGAGGATCTCGCAGCTGTACTAGATGAGGATAATAAGTCTTTTGAAAATGGTGAAGGGCCCCAGTCATCTTTGTTGGAAGGAAGTACGCTTCTTAGAGGCTCTGGTGAAAAAAGTTCTAAACGTGGGCAGAAGAGACATTCCATAAAAGATGAGATATCATCTTTATTAGAGTCAGATCCTGGCCAAGATGGTTCAACACCTGTTTCTGGGAAAAGGCACGTAGAGAGGCTGGACTACAAAAAGCTGCATGATGAGGAATATGGAAATATTCCTACAAGTGACGATGAAGATTATAATGAAACTGCTGCACCAAGGAAAAGGAAGCAAGGCACTCAAGTCTCTCCAGCGTCACTAATAGGAAAACCCTCAACCATTAAGAATGGAGTAACCTCCAAAGATATAAAAGATGATCCAGACAAGAATGAGCATACTCCTAGAAGAACACCTCGACGAAAGTCAAGTGCTAAAGATAACAGCAGTTTGCCAAATGAATCGCTTAAAAGCTCTCCTAAGTCTGGTTCTACTAGTGGGAGAGCTAGAGCATCAAAATATAGAAGACTCGGGGAAGCTGTAACTCAGCAACTCTATGCATCCTTTAAGGAAAATCAATACCCAGACCGAAGTATGAAGGAAAGACTGGCCCAAGAACTAGGAGTTGTGGCTAAGCAGGTAAGCAAATGGTTTGAAAATGCTCGCCATTGTGTGAAAGCAGGTGTGGCCGTGCCTCAAGCTATGAGAAAACAACCTAACCAAGCAGAGACTAATATCAGAGATGCTGATCACGATGGAGCTCAGAAGAATGAATCACCAGGGACAGATGATGCTGTGGCAGGTTGCTGGAGTCAGGATGTGAAGGATAATAAATCGGTGACTCCAAAAAGCAATAGAGCGAAGACTAGTACTCCAAAGGGTAGAAAGAGAAAATCAAGGTTGGATCCTGGGGGATCGGATCTTGATGAAAAATTTAAGACACCACCAGAAACCAGTAGTAAAGGTGGTCGAGTTACAAGACGACGGAAATCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

1206

Amino Acids

131.73

Weight (kDa)

4.74

Isoelectric Point (pI)

57.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	678 - 729	4.2e-09	PHD-finger
Homeodomain	PF00046	1049 - 1095	7.8e-10	Homeodomain
Homeobox_KN	PF05920	1065 - 1095	8.6e-07	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2883
AarI	CACCTGC	2 cut(s)	1078, 3290
Acc16I	TGCGCA	1 cut(s)	2035
Acc36I	ACCTGC	4 cut(s)	1078, 3247, 3290, 3410
AccB7I	CCANNNNNTGG	1 cut(s)	1009
AciI	CCGC	8 cut(s)	17, 111, 911, 1133, 1616, 2129, 2153, 2523
AcoI	YGGCCR	2 cut(s)	2770, 3306
AcuI	CTGAAG	3 cut(s)	285, 1647, 2295
AdeI	CACNNNGTG	1 cut(s)	1964
AfaI	GTAC	9 cut(s)	76, 394, 915, 1026, 1239, 2477, 2607, 2674, 3490
AfiI	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3104
AhlI	ACTAGT	2 cut(s)	3113, 3485
AjnI	CCWGG	5 cut(s)	2179, 2319, 2767, 3397, 3526
AjuI	GAANNNNNNNTTGG	4 cut(s)	926, 958, 992, 1024
Alw21I	GWGCWC	1 cut(s)	3382
Alw26I	GTCTC	5 cut(s)	2369, 2444, 2716, 2932, 3341
AlwNI	CAGNNNCTG	3 cut(s)	1499, 2438, 2768
Ama87I	CYCGRG	1 cut(s)	3149
AoxI	GGCC	7 cut(s)	1273, 1348, 1874, 2645, 2770, 3228, 3306
ApaI	GGGCCC	1 cut(s)	2649
ArsI	GACNNNNNNTTYG	4 cut(s)	1459, 1491, 2030, 2062
Asp700I	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
AspLEI	GCGC	3 cut(s)	1462, 1605, 2036
AspS9I	GGNCC	8 cut(s)	359, 1349, 1420, 2046, 2369, 2645, 2646, 3229
AsuHPI	GGTGA	7 cut(s)	209, 230, 1850, 2651, 2705, 3387, 3469
AvaI	CYCGRG	1 cut(s)	3149
AvaII	GGWCC	4 cut(s)	359, 1420, 2046, 2369
BaeGI	GKGCMC	1 cut(s)	2649
BaeI	ACNNNNGTAYC	2 cut(s)	1302, 1335
BalI	TGGCCA	1 cut(s)	2772
BamHI	GGATCC	1 cut(s)	3523
BanII	GRGCYC	3 cut(s)	1016, 2649, 3382
BbsI	GAAGAC	3 cut(s)	798, 3151, 3488
Bbv12I	GWGCWC	1 cut(s)	3382
BccI	CCATC	8 cut(s)	188, 842, 1492, 2081, 2360, 2435, 2771, 3368
BceAI	ACGGC	2 cut(s)	1629, 3293
BciT130I	CCWGG	5 cut(s)	2181, 2321, 2769, 3399, 3528
BciVI	GTATCC	2 cut(s)	646, 1330
BclI	TGATCA	3 cut(s)	199, 1294, 3367
BcoDI	GTCTC	5 cut(s)	2369, 2444, 2716, 2932, 3341
BcuI	ACTAGT	2 cut(s)	3113, 3485
BfmI	CTRYAG	2 cut(s)	167, 1314
BfuAI	ACCTGC	4 cut(s)	1078, 3247, 3290, 3410
BfuI	GTATCC	2 cut(s)	646, 1330
BglII	AGATCT	3 cut(s)	487, 1574, 1936
BlpI	GCTNAGC	1 cut(s)	3252
BmcAI	AGTACT	2 cut(s)	2477, 3490
Bme1390I	CCNGG	5 cut(s)	2181, 2321, 2769, 3399, 3528
Bme18I	GGWCC	4 cut(s)	359, 1420, 2046, 2369
BmeT110I	CYCGRG	1 cut(s)	3149
BmgT120I	GGNCC	8 cut(s)	359, 1349, 1420, 2046, 2369, 2645, 2646, 3229
BmiI	GGNNCC	7 cut(s)	744, 1395, 2047, 2127, 2647, 2648, 3525
BmrFI	CCNGG	5 cut(s)	2181, 2321, 2769, 3399, 3528
BmrI	ACTGGG	2 cut(s)	1049, 2644
BmuI	ACTGGG	2 cut(s)	1049, 2644
BoxI	GACNNNNGTC	2 cut(s)	1567, 3043
BpiI	GAAGAC	3 cut(s)	798, 3151, 3488
BpmI	CTGGAG	4 cut(s)	1312, 2514, 2916, 3448
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	3252
BpuEI	CTTGAG	6 cut(s)	1499, 1591, 2211, 2468, 2907, 3300
BsaAI	YACGTR	1 cut(s)	2809
BsaBI	GATNNNNATC	3 cut(s)	198, 2517, 3366
BsaI	GGTCTC	1 cut(s)	2444
BsaJI	CCNNGG	7 cut(s)	2049, 2101, 2179, 2320, 2900, 3398, 3527
BsaWI	WCCGGW	1 cut(s)	1797
BsaXI	ACNNNNNCTCC	2 cut(s)	3475, 3505
Bsc4I	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3104
Bse3DI	GCAATG	4 cut(s)	433, 655, 860, 1699
Bse8I	GATNNNNATC	3 cut(s)	198, 2517, 3366
BseBI	CCWGG	5 cut(s)	2181, 2321, 2769, 3399, 3528
BseDI	CCNNGG	7 cut(s)	2049, 2101, 2179, 2320, 2900, 3398, 3527
BseGI	GGATG	9 cut(s)	185, 328, 2059, 2189, 2386, 2512, 2551, 3179, 3442
BseJI	GATNNNNATC	3 cut(s)	198, 2517, 3366
BseLI	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3104
BseMI	GCAATG	4 cut(s)	433, 655, 860, 1699
BseMII	CTCAG	6 cut(s)	234, 1491, 1772, 2580, 3179, 3395
BseSI	GKGCMC	1 cut(s)	2649
BseYI	CCCAGC	1 cut(s)	2256
BsgI	GTGCAG	1 cut(s)	2880
BshFI	GGCC	7 cut(s)	1275, 1350, 1876, 2647, 2772, 3230, 3308
BsiHKAI	GWGCWC	1 cut(s)	3382
BsiHKCI	CYCGRG	1 cut(s)	3149
BsiSI	CCGG	2 cut(s)	20, 1798
BslFI	GGGAC	4 cut(s)	267, 1149, 2337, 3415
BslI	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3104
BsmAI	GTCTC	5 cut(s)	2369, 2444, 2716, 2932, 3341
BsmBI	CGTCTC	1 cut(s)	2369
BsmFI	GGGAC	4 cut(s)	267, 1149, 2337, 3415
BsmI	GAATGC	1 cut(s)	1510
BsnI	GGCC	7 cut(s)	1275, 1350, 1876, 2647, 2772, 3230, 3308
Bso31I	GGTCTC	1 cut(s)	2444
BsoBI	CYCGRG	1 cut(s)	3149
Bsp120I	GGGCCC	1 cut(s)	2645
Bsp1286I	GDGCHC	3 cut(s)	1016, 2649, 3382
Bsp1407I	TGTACA	1 cut(s)	1024
Bsp1720I	GCTNAGC	1 cut(s)	3252
BspACI	CCGC	8 cut(s)	17, 111, 911, 1133, 1616, 2129, 2153, 2523
BspANI	GGCC	7 cut(s)	1275, 1350, 1876, 2647, 2772, 3230, 3308
BspCNI	CTCAG	6 cut(s)	235, 1492, 1773, 2581, 3178, 3394
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	7 cut(s)	744, 1395, 2047, 2127, 2647, 2648, 3525
BspMAI	CTGCAG	1 cut(s)	1318
BspMI	ACCTGC	4 cut(s)	1078, 3247, 3290, 3410
BspQI	GCTCTTC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	2444
BsrDI	GCAATG	4 cut(s)	433, 655, 860, 1699
BsrGI	TGTACA	1 cut(s)	1024
BssECI	CCNNGG	7 cut(s)	2049, 2101, 2179, 2320, 2900, 3398, 3527
BssT1I	CCWWGG	2 cut(s)	2049, 2900
Bst2UI	CCWGG	5 cut(s)	2181, 2321, 2769, 3399, 3528
Bst4CI	ACNGT	7 cut(s)	210, 528, 1083, 1676, 2018, 2102, 2561
Bst6I	CTCTTC	5 cut(s)	468, 990, 1356, 1712, 2714
BstAPI	GCANNNNNTGC	1 cut(s)	2285
BstAUI	TGTACA	1 cut(s)	1024
BstBAI	YACGTR	1 cut(s)	2809
BstC8I	GCNNGC	3 cut(s)	1063, 1414, 3283
BstDSI	CCRYGG	1 cut(s)	2101
BstENI	CCTNNNNNAGG	1 cut(s)	924
BstF5I	GGATG	9 cut(s)	185, 328, 2059, 2189, 2386, 2512, 2551, 3179, 3442
BstHHI	GCGC	3 cut(s)	1462, 1605, 2036
BstMAI	GTCTC	5 cut(s)	2369, 2444, 2716, 2932, 3341
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 1071, 2285, 2288, 2294, 3305
BstNI	CCWGG	5 cut(s)	2181, 2321, 2769, 3399, 3528
BstPAI	GACNNNNGTC	2 cut(s)	1567, 3043
BstSCI	CCNGG	5 cut(s)	2179, 2319, 2767, 3397, 3526
BstSFI	CTRYAG	2 cut(s)	167, 1314
BstSLI	GKGCMC	1 cut(s)	2649
BstV2I	GAAGAC	3 cut(s)	798, 3151, 3488
BstX2I	RGATCY	8 cut(s)	487, 1574, 1936, 2533, 2593, 2764, 3523, 3538
BstYI	RGATCY	8 cut(s)	487, 1574, 1936, 2533, 2593, 2764, 3523, 3538
BsuI	GTATCC	2 cut(s)	646, 1330
BsuRI	GGCC	7 cut(s)	1275, 1350, 1876, 2647, 2772, 3230, 3308
BtgI	CCRYGG	1 cut(s)	2101
BtsCI	GGATG	9 cut(s)	185, 328, 2059, 2189, 2386, 2512, 2551, 3179, 3442
BtsI	GCAGTG	2 cut(s)	1311, 1594
BtsIMutI	CAGTG	7 cut(s)	406, 533, 1311, 1336, 1594, 1681, 2023
BveI	ACCTGC	4 cut(s)	1078, 3247, 3290, 3410
Cac8I	GCNNGC	3 cut(s)	1063, 1414, 3283
CaiI	CAGNNNCTG	3 cut(s)	1499, 2438, 2768
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	3 cut(s)	1462, 1605, 2036
Cfr13I	GGNCC	8 cut(s)	359, 1349, 1420, 2046, 2369, 2645, 2646, 3229
CseI	GACGC	3 cut(s)	1485, 1926, 2925
Csp6I	GTAC	9 cut(s)	75, 393, 914, 1025, 1238, 2476, 2606, 2673, 3489
CspCI	CAANNNNNGTGG	2 cut(s)	2099, 2134
CviAII	CATG	5 cut(s)	92, 482, 516, 1185, 2837
CviQI	GTAC	9 cut(s)	75, 393, 914, 1025, 1238, 2476, 2606, 2673, 3489
DraIII	CACNNNGTG	1 cut(s)	1964
EaeI	YGGCCR	2 cut(s)	2770, 3306
Eam1104I	CTCTTC	5 cut(s)	468, 990, 1356, 1712, 2714
EarI	CTCTTC	5 cut(s)	468, 990, 1356, 1712, 2714
EciI	GGCGGA	2 cut(s)	1631, 2142
Ecl136II	GAGCTC	1 cut(s)	3380
Eco130I	CCWWGG	2 cut(s)	2049, 2900
Eco24I	GRGCYC	3 cut(s)	1016, 2649, 3382
Eco31I	GGTCTC	1 cut(s)	2444
Eco32I	GATATC	2 cut(s)	2239, 2745
Eco47I	GGWCC	4 cut(s)	359, 1420, 2046, 2369
Eco53kI	GAGCTC	1 cut(s)	3380
Eco57I	CTGAAG	3 cut(s)	285, 1647, 2295
Eco88I	CYCGRG	1 cut(s)	3149
EcoICRI	GAGCTC	1 cut(s)	3380
EcoNI	CCTNNNNNAGG	1 cut(s)	924
EcoO109I	RGGNCCY	3 cut(s)	1349, 2645, 2646
EcoRI	GAATTC	2 cut(s)	964, 1372
EcoRII	CCWGG	5 cut(s)	2179, 2319, 2767, 3397, 3526
EcoRV	GATATC	2 cut(s)	2239, 2745
EcoT14I	CCWWGG	2 cut(s)	2049, 2900
EcoT22I	ATGCAT	3 cut(s)	1510, 2431, 3181
EcoT38I	GRGCYC	3 cut(s)	1016, 2649, 3382
ErhI	CCWWGG	2 cut(s)	2049, 2900
Esp3I	CGTCTC	1 cut(s)	2369
FaeI	CATG	5 cut(s)	95, 485, 519, 1188, 2840
FalI	AAGNNNNNCTT	2 cut(s)	1225, 1257
FaqI	GGGAC	4 cut(s)	267, 1149, 2337, 3415
FatI	CATG	5 cut(s)	91, 481, 515, 1184, 2836
FauI	CCCGC	2 cut(s)	1126, 2530
FbaI	TGATCA	3 cut(s)	199, 1294, 3367
FokI	GGATG	9 cut(s)	172, 315, 2066, 2196, 2393, 2519, 2558, 3166, 3449
FriOI	GRGCYC	3 cut(s)	1016, 2649, 3382
FspI	TGCGCA	1 cut(s)	2035
GlaI	GCGC	3 cut(s)	1461, 1604, 2035
GsaI	CCCAGC	1 cut(s)	2260
GsuI	CTGGAG	4 cut(s)	1312, 2514, 2916, 3448
HaeIII	GGCC	7 cut(s)	1275, 1350, 1876, 2647, 2772, 3230, 3308
HapII	CCGG	2 cut(s)	20, 1798
HgaI	GACGC	3 cut(s)	1485, 1926, 2925
HhaI	GCGC	3 cut(s)	1462, 1605, 2036
Hin1II	CATG	5 cut(s)	95, 485, 519, 1188, 2840
Hin6I	GCGC	3 cut(s)	1460, 1603, 2034
HinP1I	GCGC	3 cut(s)	1460, 1603, 2034
HpaII	CCGG	2 cut(s)	20, 1798
HphI	GGTGA	7 cut(s)	209, 230, 1850, 2651, 2705, 3387, 3469
Hpy166II	GTNNAC	9 cut(s)	122, 301, 674, 682, 782, 986, 1127, 1238, 1247
Hpy8I	GTNNAC	9 cut(s)	122, 301, 674, 682, 782, 986, 1127, 1238, 1247
Hpy99I	CGWCG	3 cut(s)	1920, 3042, 3606
HpyCH4III	ACNGT	7 cut(s)	210, 528, 1083, 1676, 2018, 2102, 2561
HpyCH4IV	ACGT	4 cut(s)	77, 1948, 2710, 2808
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 1071, 2285, 2288, 2294, 3305
HpySE526I	ACGT	4 cut(s)	77, 1948, 2710, 2808
Hsp92II	CATG	5 cut(s)	95, 485, 519, 1188, 2840
HspAI	GCGC	3 cut(s)	1460, 1603, 2034
Ksp22I	TGATCA	3 cut(s)	199, 1294, 3367
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	5 cut(s)	1331, 1636, 1885, 2533, 3377
MaeII	ACGT	4 cut(s)	77, 1948, 2710, 2808
MfeI	CAATTG	2 cut(s)	248, 656
MflI	RGATCY	8 cut(s)	487, 1574, 1936, 2533, 2593, 2764, 3523, 3538
MhlI	GDGCHC	3 cut(s)	1016, 2649, 3382
MlsI	TGGCCA	1 cut(s)	2772
MluNI	TGGCCA	1 cut(s)	2772
MlyI	GAGTC	6 cut(s)	2216, 2579, 2768, 3141, 3439, 3454
MmeI	TCCRAC	4 cut(s)	1826, 2371, 2643, 3501
Mox20I	TGGCCA	1 cut(s)	2772
Mph1103I	ATGCAT	3 cut(s)	1510, 2431, 3181
MroXI	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
MscI	TGGCCA	1 cut(s)	2772
MslI	CAYNNNNRTG	1 cut(s)	1428
Msp20I	TGGCCA	1 cut(s)	2772
MspA1I	CMGCKG	7 cut(s)	642, 1065, 1751, 2256, 2282, 2525, 2603
MspI	CCGG	2 cut(s)	20, 1798
MspR9I	CCNGG	5 cut(s)	2181, 2321, 2769, 3399, 3528
MunI	CAATTG	2 cut(s)	248, 656
Mva1269I	GAATGC	1 cut(s)	1510
MvaI	CCWGG	5 cut(s)	2181, 2321, 2769, 3399, 3528
MwoI	GCNNNNNNNGC	6 cut(s)	11, 1071, 2285, 2288, 2294, 3305
NlaIII	CATG	5 cut(s)	95, 485, 519, 1188, 2840
NlaIV	GGNNCC	7 cut(s)	744, 1395, 2047, 2127, 2647, 2648, 3525
NmuCI	GTSAC	9 cut(s)	401, 430, 1589, 1773, 2096, 2186, 2867, 2937, 3457
NsbI	TGCGCA	1 cut(s)	2035
NsiI	ATGCAT	3 cut(s)	1510, 2431, 3181
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	2 cut(s)	1078, 3290
PciSI	GCTCTTC	1 cut(s)	468
PctI	GAATGC	1 cut(s)	1510
PdmI	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
PflMI	CCANNNNNTGG	1 cut(s)	1009
PleI	GAGTC	6 cut(s)	2216, 2579, 2767, 3141, 3438, 3454
PpsI	GAGTC	6 cut(s)	2216, 2579, 2767, 3141, 3438, 3454
Ppu21I	YACGTR	1 cut(s)	2809
PshAI	GACNNNNGTC	2 cut(s)	1567, 3043
PsiI	TTATAA	1 cut(s)	2883
Psp124BI	GAGCTC	1 cut(s)	3382
Psp6I	CCWGG	5 cut(s)	2179, 2319, 2767, 3397, 3526
PspFI	CCCAGC	1 cut(s)	2256
PspGI	CCWGG	5 cut(s)	2179, 2319, 2767, 3397, 3526
PspN4I	GGNNCC	7 cut(s)	744, 1395, 2047, 2127, 2647, 2648, 3525
PspOMI	GGGCCC	1 cut(s)	2645
PspPI	GGNCC	8 cut(s)	359, 1349, 1420, 2046, 2369, 2645, 2646, 3229
PsrI	GAACNNNNNNTAC	2 cut(s)	897, 929
PstI	CTGCAG	1 cut(s)	1318
PstNI	CAGNNNCTG	3 cut(s)	1499, 2438, 2768
PsuI	RGATCY	8 cut(s)	487, 1574, 1936, 2533, 2593, 2764, 3523, 3538
PvuII	CAGCTG	6 cut(s)	642, 1065, 1751, 2256, 2282, 2603
RsaI	GTAC	9 cut(s)	76, 394, 915, 1026, 1239, 2477, 2607, 2674, 3490
RsaNI	GTAC	9 cut(s)	75, 393, 914, 1025, 1238, 2476, 2606, 2673, 3489
RseI	CAYNNNNRTG	1 cut(s)	1428
SacI	GAGCTC	1 cut(s)	3382
SapI	GCTCTTC	1 cut(s)	468
Sau96I	GGNCC	8 cut(s)	359, 1349, 1420, 2046, 2369, 2645, 2646, 3229
ScaI	AGTACT	2 cut(s)	2477, 3490
SchI	GAGTC	6 cut(s)	2216, 2579, 2768, 3141, 3439, 3454
ScrFI	CCNGG	5 cut(s)	2181, 2321, 2769, 3399, 3528
SduI	GDGCHC	3 cut(s)	1016, 2649, 3382
SfcI	CTRYAG	2 cut(s)	167, 1314
SinI	GGWCC	4 cut(s)	359, 1420, 2046, 2369
SmiMI	CAYNNNNRTG	1 cut(s)	1428
SmlI	CTYRAG	6 cut(s)	1478, 1606, 2226, 2447, 2922, 3315
SmoI	CTYRAG	6 cut(s)	1478, 1606, 2226, 2447, 2922, 3315
SpeI	ACTAGT	2 cut(s)	3113, 3485
SsiI	CCGC	8 cut(s)	17, 111, 911, 1133, 1616, 2129, 2153, 2523
SspI	AATATT	2 cut(s)	598, 2857
SstI	GAGCTC	1 cut(s)	3382
StyD4I	CCNGG	5 cut(s)	2179, 2319, 2767, 3397, 3526
StyI	CCWWGG	2 cut(s)	2049, 2900
TaaI	ACNGT	7 cut(s)	210, 528, 1083, 1676, 2018, 2102, 2561
TaiI	ACGT	4 cut(s)	80, 1951, 2713, 2811
TaqI	TCGA	4 cut(s)	1571, 1915, 3037, 3589
TaqII	GACCGA	2 cut(s)	242, 3222
TatI	WGTACW	5 cut(s)	392, 1024, 2475, 2605, 3488
TscAI	CASTG	7 cut(s)	406, 540, 1318, 1336, 1594, 1681, 2023
TseFI	GTSAC	9 cut(s)	401, 430, 1589, 1773, 2096, 2186, 2867, 2937, 3457
Tsp45I	GTSAC	9 cut(s)	401, 430, 1589, 1773, 2096, 2186, 2867, 2937, 3457
TspGWI	ACGGA	3 cut(s)	2019, 2393, 3619
TspRI	CASTG	7 cut(s)	406, 540, 1318, 1336, 1594, 1681, 2023
Van91I	CCANNNNNTGG	1 cut(s)	1009
VpaK11BI	GGWCC	4 cut(s)	359, 1420, 2046, 2369
XagI	CCTNNNNNAGG	1 cut(s)	924
XmnI	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
ZrmI	AGTACT	2 cut(s)	2477, 3490
Zsp2I	ATGCAT	3 cut(s)	1510, 2431, 3181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.