Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Reverse (-)

59421371 .. 59429226

Gene Structure 7856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3624 bp

ATGGCTGATGCTGCACCGCGGGATATTCCTCTGGAATGTGTGAGCAGTCAAACTGCAAAATGCCATGAAGAAAGTACATCAGGACAGACACATGACATTGGTTCAGAAAGCGGATATAGTGAACCAACCAAGCAAAAGATTGGTTGTGATATTCTTCAAAATGAGCTACAGGAAATCTGCAATGCATCCAATGATGATGATCAATCAGAGTCATTTGGAAATTTGACTGAGAAGTCTCACCCTGAGCAATTGGGACTGCCTCCTGAAGATGTGAGCAACATTAGTCAAGGAGCTGCTGTAAACATTCTTTCCAAATCAGCACACGGACATCCTTCCACCTCTGAAAACATTCAAAATGGACCATTACAAATCAGAACAGCATTATCTAGTTGTACTACCAGTGACCACTTGCAATCAGTTTCTGGCAATGTGACCAAGAATTCTCTTGCTGAAAAATTGGAACTGCCTTGTGAAGAGCCTCATGAAGATCTGGGTTGTCAGACTGGAAAAACTTCATGCTCTGAACAGATTTCACTGGAACAGAGAAATGATTTTGGTTTCGGAACAAGAGAAGAAAAGCAGCATATCGGCTCTGATATTGTTCGAAATGAAAACTTACAAACTATTATTCCAGTATCCAGCTGTGGCAATGAACAATTGCAGTTCATTAGTGAAACTGTGAACACGACTTTTCCTAATGAACAAGCAGGAGGGCCTCCTGAAGATGTGAGCAAGACATTGGAACCGACAAATAATTTTGGTTTTGAAACTCAATCTAGTGAACTAGCAGAAGACAAGCAGCATTTTGGCTCTGATGTTCCACAAAACGAAGGGTTACAAAGCTGTGATGGTAATGAACCATTGCAGTCATTTTGTGAAAATATGAACAAAAGTTATCTTAATGAACAAGCGGTACTGCCTTGTGAAGGTGTGAAAAAGACTTTGGAACAGACAAATAATGTGAATTCTGGAACTTCATATAGTGAACCAGCAGAAGAGGACCAGAATTTGGGCTCTGATTTTGTACAAGAAGAACCATTACAAACTATTATCCCAGTAGCCAGCTGTGGTGGCAACAAACAGTTGCAGGTGGTTAATGAAGTTGCGAGTGTTACTTCTCTTAGTGAACAAGCGGGACTGCCTCTTGAAGCTGTGAGCAAGACTTGTCAGACTGAAAAACTTTCATGCTATCTCCAAACCGCATCGGATCAGATCAATGAATCTGGTTCAGGAAGTGTACCTTGTGAACCACAGGGACAGAGAGATCAGCTTGGCCTTTTACCTTCCCAAAATGATCAAGTTAAAACATGCACTGCAGTATCCAGCTCCATTGTTTCTGAACAATCGGGCCCTTCTGTTGAAGAGATGAAGAATTCTGTTATTGGGCAGTTGGAACCACCCCTTGAAGATGCAAGCAAGGACCACACTGATGAACTAATCAAACCACACACGAACAATGCGCCCCAAAATTCTAGTCTTGAGCCATCAGAAACAGCGTCTGAGAATGCATCTAAAATTTCTAGCCAGTTTGGTTGCAAGGACAAGCGAAATTCAAGTTCAAGACAAAAGTCGAGATCTTTGGTAAGCAGTGACAGAGTTCTGCGCTCAAGGACGGTGGAGAAACCTGAAGCTCCTGAATTAAGTAATAATGTTGCAACACTTGAATCAAGTAATAGTGTTGCTAATGTAAGCAATGAGAAAGAGGGAAAAAGGAAGAAGAGAAAGAAGAAGCACAGGGACAGAGTTGCAGCTGATGAATTTTCAAGGATCAGGTCACATCTGAGATATTTTCTGAACCGGATAAACTATGAGAAATCTCTTATTGATGCTTATTCTGGTGAAGGTTGGAAAGGAAACAGCCTAGAAAAAATAAGGCCAGAGAAGGAGCTTCAACGAGCTACTTCTGAAATACTTCGACGTAAATTGAAAATAAGAGATCTTTTTCAACGTCTTGATTCACTTTGTGCCGAAGGAATGTTTCCAGAATCTTTATTTGATTCAGACGGACAGATTGACAGTGAGGATATATTCTGCGCAAAATGTGGTTCCAAGGATGTGTATGCTGATAATGACATCATACTCTGTGATGGGGCTTGTGACCGTGGATTCCACCAGTATTGTCTGGAACCGCCTCTATTGAGTGAAGAAATTCCGCCTGATGATGAGGGTTGGTTATGCCCTGGATGTGACTGCAAAGTTGATTGCATTGATTTGCTTAATGACTCTCAAGGAACAGATCTCTCTATTACTGACAGCTGGGAGAAGGTATTTCCTGAAGCAGCTGTTGCAGCATCAGCAGGACAGCATCAGGAGAACAACCAGGGACTTCCATCAGATGATTCTGATGATAATGATTATGACCCTGACGGTCCAGAGACAGATGAGGAAGTCCAGGAAGCAGAATCAAGTTCCGATGAATCTGAATATGCATCAGCATCTGATGGACTTGAGACCCCAAAAACTACTGATGAGCAGTACTTAGGGCTTCCTTCTGATGATTCAGAGGATGATGATTTCAATCCTGATGCTCCAGATCCCACAGAGGATGTTAAGCAGGACAGTTCAAGCTCTGATTTTACATCTGACTCTGAGGATCTTGCAGCTGTACTAGATGAGGATAATAAGTCTTTTGAAAATGGTGAAGGGCCCCAGTCATCTTTGTTGGAAGGAAGTACGCTTCTTAGAGGCTCTAGTGAAAAAAGTTCTAAACGTGGGCAGAAGAGACATTCCATAAAAGATGAGATATCATCTTTATTAGAGTCAGATCCTGGCCAAGATGGTTCAACACCTGTTTCTGGGAAAAGGCACGTAGAGAGGCTGGACTACAAAAAACTGCATGATGAGGAATATGGAAATATTCCTACAAGTGACGATGAAGATTATAATGAAACTGCTGCACCAAGGAAAAGGAAGAAAGGCACTGGACAAGTCTCTCCAGCGTCACTAAAAGGAAAACCCTCAACCATTAAGAATGAAGTAGCCTCCAAAGATATAAAAGATGATCCAGACAAGAATGAGCATACTCCTAGAAGAACACCTCGACGAAAGTCAAGTGTTAAAGAAAACAGCAGTTCACCAAATGAATCGCTTAAAAGCTCTCCTAAGTCTGGTTCTACTAGTGGGAGAGCTAGAGCATCAAAATATAGAAGACTCGGGGAAGCCGTAACTCAGCAACTCTATGCATCCTTCAAGGAAAATCAATACCCAGACCGAAGTATGAAGGAAAGACTGGCCCAAGAACTAGGAGTCATGGCTAAGCAGGTAAGCAAATGGTTTGAAAATGCTCGCCATTGTGTGAAAGCAGGTCTGGCCGTGCCTCAAGCTATGAGAAAACAACCTAACCAAGCAGAGACTAATATCAGAGATGCTGATCACGATGGAGCTCAGAAGAATGAATCACCAGGGACAGATGATGCTGTGGCAGGTTGCTGCAGTCAGGATGTGAAGGATAATAAATCGGTGACTCCAAAAAGCAGTAGAGCGAAGACTAGTACTCCAAAGGGTAGAAAGAGAAAATCAAGGTTGGATCCTGGGGGATCGGATCTTGACGAAAAATTTAAGACACCACCAGAAACTAGTAGTAAAGGTGGTCGAGTTACAAGACGACGGAAATCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

1208

Amino Acids

131.87

Weight (kDa)

4.78

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	678 - 729	9.2e-10	PHD-finger
Homeodomain	PF00046	1050 - 1096	4.5e-10	Homeodomain
Homeobox_KN	PF05920	1066 - 1096	3.1e-07	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2883
AarI	CACCTGC	1 cut(s)	1078
AasI	GACNNNNNNGTC	1 cut(s)	232
Acc16I	TGCGCA	1 cut(s)	2035
Acc36I	ACCTGC	4 cut(s)	1078, 3250, 3293, 3413
AccB7I	CCANNNNNTGG	1 cut(s)	1009
AccII	CGCG	1 cut(s)	19
AciI	CCGC	8 cut(s)	17, 19, 111, 911, 1133, 1200, 2129, 2153
AcoI	YGGCCR	2 cut(s)	2770, 3309
AcuI	CTGAAG	4 cut(s)	285, 741, 1647, 2295
AdeI	CACNNNGTG	1 cut(s)	1964
AfaI	GTAC	9 cut(s)	76, 394, 915, 1026, 1239, 2477, 2607, 2674, 3493
AfiI	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3107
AhlI	ACTAGT	3 cut(s)	3116, 3488, 3575
AjnI	CCWGG	6 cut(s)	2179, 2319, 2391, 2767, 3400, 3529
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
Alw21I	GWGCWC	1 cut(s)	3385
Alw26I	GTCTC	6 cut(s)	240, 2369, 2444, 2716, 2935, 3344
AlwNI	CAGNNNCTG	4 cut(s)	422, 1499, 2438, 2768
Ama87I	CYCGRG	1 cut(s)	3152
AoxI	GGCC	8 cut(s)	713, 1273, 1348, 1874, 2645, 2770, 3231, 3309
ApaI	GGGCCC	2 cut(s)	1352, 2649
ArsI	GACNNNNNNTTYG	2 cut(s)	1459, 1491
Asp700I	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
AspLEI	GCGC	3 cut(s)	1462, 1605, 2036
AsuHPI	GGTGA	6 cut(s)	230, 1850, 2651, 3066, 3390, 3472
AsuII	TTCGAA	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	3152
AvaII	GGWCC	4 cut(s)	359, 1000, 1420, 2369
BaeGI	GKGCMC	2 cut(s)	1352, 2649
BaeI	ACNNNNGTAYC	2 cut(s)	1302, 1335
BalI	TGGCCA	1 cut(s)	2772
BamHI	GGATCC	1 cut(s)	3526
BanII	GRGCYC	4 cut(s)	1016, 1352, 2649, 3385
BarI	GAAGNNNNNNTAC	2 cut(s)	1023, 1055
BbsI	GAAGAC	3 cut(s)	798, 3154, 3491
Bbv12I	GWGCWC	1 cut(s)	3385
BbvI	GCAGC	9 cut(s)	280, 592, 811, 1760, 2291, 2300, 2612, 2881, 3416
BccI	CCATC	7 cut(s)	842, 1492, 2081, 2338, 2435, 2771, 3371
BceAI	ACGGC	2 cut(s)	3146, 3296
BciT130I	CCWGG	6 cut(s)	2181, 2321, 2393, 2769, 3402, 3531
BciVI	GTATCC	2 cut(s)	646, 1330
BclI	TGATCA	3 cut(s)	199, 1294, 3370
BcoDI	GTCTC	6 cut(s)	240, 2369, 2444, 2716, 2935, 3344
BcuI	ACTAGT	3 cut(s)	3116, 3488, 3575
BfmI	CTRYAG	3 cut(s)	167, 1314, 3430
BfuAI	ACCTGC	4 cut(s)	1078, 3250, 3293, 3413
BfuI	GTATCC	2 cut(s)	646, 1330
BglII	AGATCT	4 cut(s)	487, 1574, 1936, 2236
BlpI	GCTNAGC	1 cut(s)	3255
BmcAI	AGTACT	2 cut(s)	2477, 3493
Bme1390I	CCNGG	6 cut(s)	2181, 2321, 2393, 2769, 3402, 3531
Bme18I	GGWCC	4 cut(s)	359, 1000, 1420, 2369
BmeT110I	CYCGRG	1 cut(s)	3152
BmiI	GGNNCC	8 cut(s)	744, 1350, 1395, 2047, 2127, 2647, 2648, 3528
BmrFI	CCNGG	6 cut(s)	2181, 2321, 2393, 2769, 3402, 3531
BmrI	ACTGGG	2 cut(s)	1049, 2644
BmuI	ACTGGG	2 cut(s)	1049, 2644
BoxI	GACNNNNGTC	2 cut(s)	1567, 3046
BpiI	GAAGAC	3 cut(s)	798, 3154, 3491
BpmI	CTGGAG	2 cut(s)	2514, 2919
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	3255
Bpu14I	TTCGAA	1 cut(s)	604
BpuEI	CTTGAG	5 cut(s)	1499, 1591, 2211, 2468, 3303
BsaAI	YACGTR	1 cut(s)	2809
BsaBI	GATNNNNATC	3 cut(s)	198, 2517, 3369
BsaI	GGTCTC	1 cut(s)	2444
BsaJI	CCNNGG	8 cut(s)	17, 2049, 2101, 2179, 2320, 2900, 3401, 3530
BsaWI	WCCGGW	1 cut(s)	1797
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 3478, 3508
Bsc4I	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3107
Bse3DI	GCAATG	5 cut(s)	187, 433, 655, 860, 1699
Bse8I	GATNNNNATC	3 cut(s)	198, 2517, 3369
BseBI	CCWGG	6 cut(s)	2181, 2321, 2393, 2769, 3402, 3531
BseDI	CCNNGG	8 cut(s)	17, 2049, 2101, 2179, 2320, 2900, 3401, 3530
BseGI	GGATG	8 cut(s)	185, 328, 2059, 2189, 2512, 2551, 3182, 3445
BseJI	GATNNNNATC	3 cut(s)	198, 2517, 3369
BseLI	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3107
BseMI	GCAATG	5 cut(s)	187, 433, 655, 860, 1699
BseMII	CTCAG	7 cut(s)	219, 234, 1491, 1772, 2580, 3182, 3398
BseSI	GKGCMC	2 cut(s)	1352, 2649
BseXI	GCAGC	9 cut(s)	280, 592, 811, 1760, 2291, 2300, 2612, 2881, 3416
BseYI	CCCAGC	1 cut(s)	2256
BsgI	GTGCAG	1 cut(s)	2880
Bsh1236I	CGCG	1 cut(s)	19
BshFI	GGCC	8 cut(s)	715, 1275, 1350, 1876, 2647, 2772, 3233, 3311
BsiHKAI	GWGCWC	1 cut(s)	3385
BsiHKCI	CYCGRG	1 cut(s)	3152
BsiSI	CCGG	1 cut(s)	1798
BslFI	GGGAC	6 cut(s)	267, 1149, 1269, 1751, 2337, 3418
BslI	CCNNNNNNNGG	4 cut(s)	926, 1009, 2795, 3107
BsmAI	GTCTC	6 cut(s)	240, 2369, 2444, 2716, 2935, 3344
BsmFI	GGGAC	6 cut(s)	267, 1149, 1269, 1751, 2337, 3418
BsmI	GAATGC	1 cut(s)	1510
BsnI	GGCC	8 cut(s)	715, 1275, 1350, 1876, 2647, 2772, 3233, 3311
Bso31I	GGTCTC	1 cut(s)	2444
BsoBI	CYCGRG	1 cut(s)	3152
Bsp119I	TTCGAA	1 cut(s)	604
Bsp120I	GGGCCC	2 cut(s)	1348, 2645
Bsp1286I	GDGCHC	4 cut(s)	1016, 1352, 2649, 3385
Bsp1407I	TGTACA	1 cut(s)	1024
Bsp1720I	GCTNAGC	1 cut(s)	3255
BspACI	CCGC	8 cut(s)	17, 19, 111, 911, 1133, 1200, 2129, 2153
BspANI	GGCC	8 cut(s)	715, 1275, 1350, 1876, 2647, 2772, 3233, 3311
BspCNI	CTCAG	7 cut(s)	220, 235, 1492, 1773, 2581, 3181, 3397
BspFNI	CGCG	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	8 cut(s)	744, 1350, 1395, 2047, 2127, 2647, 2648, 3528
BspMAI	CTGCAG	2 cut(s)	1318, 3434
BspMI	ACCTGC	4 cut(s)	1078, 3250, 3293, 3413
BspQI	GCTCTTC	1 cut(s)	468
BspT104I	TTCGAA	1 cut(s)	604
BspTNI	GGTCTC	1 cut(s)	2444
BsrDI	GCAATG	5 cut(s)	187, 433, 655, 860, 1699
BsrGI	TGTACA	1 cut(s)	1024
BssECI	CCNNGG	8 cut(s)	17, 2049, 2101, 2179, 2320, 2900, 3401, 3530
BssT1I	CCWWGG	2 cut(s)	2049, 2900
Bst2UI	CCWGG	6 cut(s)	2181, 2321, 2393, 2769, 3402, 3531
Bst4CI	ACNGT	7 cut(s)	679, 1083, 1615, 2018, 2102, 2369, 2561
Bst6I	CTCTTC	5 cut(s)	468, 990, 1356, 1712, 2714
BstAPI	GCANNNNNTGC	1 cut(s)	2285
BstAUI	TGTACA	1 cut(s)	1024
BstBAI	YACGTR	1 cut(s)	2809
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	3 cut(s)	1063, 1414, 3286
BstDSI	CCRYGG	2 cut(s)	17, 2101
BstENI	CCTNNNNNAGG	1 cut(s)	924
BstF5I	GGATG	8 cut(s)	185, 328, 2059, 2189, 2512, 2551, 3182, 3445
BstFNI	CGCG	1 cut(s)	19
BstHHI	GCGC	3 cut(s)	1462, 1605, 2036
BstMAI	GTCTC	6 cut(s)	240, 2369, 2444, 2716, 2935, 3344
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 1071, 2285, 2288, 2294, 3308
BstNI	CCWGG	6 cut(s)	2181, 2321, 2393, 2769, 3402, 3531
BstNSI	RCATGY	1 cut(s)	1311
BstPAI	GACNNNNGTC	2 cut(s)	1567, 3046
BstSCI	CCNGG	6 cut(s)	2179, 2319, 2391, 2767, 3400, 3529
BstSFI	CTRYAG	3 cut(s)	167, 1314, 3430
BstSLI	GKGCMC	2 cut(s)	1352, 2649
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	9 cut(s)	280, 592, 811, 1760, 2291, 2300, 2612, 2881, 3416
BstV2I	GAAGAC	3 cut(s)	798, 3154, 3491
BstX2I	RGATCY	9 cut(s)	487, 1574, 1936, 2236, 2533, 2593, 2764, 3526, 3541
BstYI	RGATCY	9 cut(s)	487, 1574, 1936, 2236, 2533, 2593, 2764, 3526, 3541
BsuI	GTATCC	2 cut(s)	646, 1330
BsuRI	GGCC	8 cut(s)	715, 1275, 1350, 1876, 2647, 2772, 3233, 3311
BtgI	CCRYGG	2 cut(s)	17, 2101
BtsCI	GGATG	8 cut(s)	185, 328, 2059, 2189, 2512, 2551, 3182, 3445
BtsI	GCAGTG	2 cut(s)	1311, 1594
BtsIMutI	CAGTG	7 cut(s)	406, 533, 1311, 1425, 1594, 2023, 2919
BveI	ACCTGC	4 cut(s)	1078, 3250, 3293, 3413
Cac8I	GCNNGC	3 cut(s)	1063, 1414, 3286
CaiI	CAGNNNCTG	4 cut(s)	422, 1499, 2438, 2768
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	3 cut(s)	1462, 1605, 2036
Cfr42I	CCGCGG	1 cut(s)	20
CseI	GACGC	2 cut(s)	1485, 2928
Csp6I	GTAC	9 cut(s)	75, 393, 914, 1025, 1238, 2476, 2606, 2673, 3492
CspCI	CAANNNNNGTGG	4 cut(s)	1596, 1631, 2099, 2134
CviAII	CATG	8 cut(s)	65, 92, 482, 516, 1185, 1308, 2837, 3250
CviQI	GTAC	9 cut(s)	75, 393, 914, 1025, 1238, 2476, 2606, 2673, 3492
DraIII	CACNNNGTG	1 cut(s)	1964
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	2770, 3309
Eam1104I	CTCTTC	5 cut(s)	468, 990, 1356, 1712, 2714
EarI	CTCTTC	5 cut(s)	468, 990, 1356, 1712, 2714
EciI	GGCGGA	1 cut(s)	2142
Ecl136II	GAGCTC	1 cut(s)	3383
Eco130I	CCWWGG	2 cut(s)	2049, 2900
Eco24I	GRGCYC	4 cut(s)	1016, 1352, 2649, 3385
Eco31I	GGTCTC	1 cut(s)	2444
Eco32I	GATATC	1 cut(s)	2745
Eco47I	GGWCC	4 cut(s)	359, 1000, 1420, 2369
Eco53kI	GAGCTC	1 cut(s)	3383
Eco57I	CTGAAG	4 cut(s)	285, 741, 1647, 2295
Eco88I	CYCGRG	1 cut(s)	3152
EcoICRI	GAGCTC	1 cut(s)	3383
EcoNI	CCTNNNNNAGG	1 cut(s)	924
EcoO109I	RGGNCCY	4 cut(s)	713, 1349, 2645, 2646
EcoRI	GAATTC	3 cut(s)	439, 964, 1372
EcoRII	CCWGG	6 cut(s)	2179, 2319, 2391, 2767, 3400, 3529
EcoRV	GATATC	1 cut(s)	2745
EcoT14I	CCWWGG	2 cut(s)	2049, 2900
EcoT22I	ATGCAT	4 cut(s)	187, 1510, 2431, 3184
EcoT38I	GRGCYC	4 cut(s)	1016, 1352, 2649, 3385
ErhI	CCWWGG	2 cut(s)	2049, 2900
FaeI	CATG	8 cut(s)	68, 95, 485, 519, 1188, 1311, 2840, 3253
FalI	AAGNNNNNCTT	2 cut(s)	1225, 1257
FaqI	GGGAC	6 cut(s)	267, 1149, 1269, 1751, 2337, 3418
FatI	CATG	8 cut(s)	64, 91, 481, 515, 1184, 1307, 2836, 3249
FauI	CCCGC	2 cut(s)	12, 1126
FbaI	TGATCA	3 cut(s)	199, 1294, 3370
FokI	GGATG	8 cut(s)	172, 315, 2066, 2196, 2519, 2558, 3169, 3452
FriOI	GRGCYC	4 cut(s)	1016, 1352, 2649, 3385
FspI	TGCGCA	1 cut(s)	2035
GlaI	GCGC	3 cut(s)	1461, 1604, 2035
GsaI	CCCAGC	1 cut(s)	2260
GsuI	CTGGAG	2 cut(s)	2514, 2919
HaeIII	GGCC	8 cut(s)	715, 1275, 1350, 1876, 2647, 2772, 3233, 3311
HapII	CCGG	1 cut(s)	1798
HgaI	GACGC	2 cut(s)	1485, 2928
HhaI	GCGC	3 cut(s)	1462, 1605, 2036
Hin1II	CATG	8 cut(s)	68, 95, 485, 519, 1188, 1311, 2840, 3253
Hin6I	GCGC	3 cut(s)	1460, 1603, 2034
HinP1I	GCGC	3 cut(s)	1460, 1603, 2034
HpaII	CCGG	1 cut(s)	1798
HphI	GGTGA	6 cut(s)	230, 1850, 2651, 3066, 3390, 3472
Hpy166II	GTNNAC	9 cut(s)	122, 301, 682, 782, 986, 1127, 1238, 1247, 3074
Hpy8I	GTNNAC	9 cut(s)	122, 301, 682, 782, 986, 1127, 1238, 1247, 3074
Hpy99I	CGWCG	3 cut(s)	1920, 3045, 3609
HpyCH4III	ACNGT	7 cut(s)	679, 1083, 1615, 2018, 2102, 2369, 2561
HpyCH4IV	ACGT	4 cut(s)	1918, 1948, 2710, 2808
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 1071, 2285, 2288, 2294, 3308
HpySE526I	ACGT	4 cut(s)	1918, 1948, 2710, 2808
Hsp92II	CATG	8 cut(s)	68, 95, 485, 519, 1188, 1311, 2840, 3253
HspAI	GCGC	3 cut(s)	1460, 1603, 2034
Ksp22I	TGATCA	3 cut(s)	199, 1294, 3370
KspI	CCGCGG	1 cut(s)	20
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	6 cut(s)	290, 1331, 1636, 1885, 2533, 3380
Lsp1109I	GCAGC	9 cut(s)	280, 592, 811, 1760, 2291, 2300, 2612, 2881, 3416
MaeII	ACGT	4 cut(s)	1918, 1948, 2710, 2808
MfeI	CAATTG	2 cut(s)	248, 656
MflI	RGATCY	9 cut(s)	487, 1574, 1936, 2236, 2533, 2593, 2764, 3526, 3541
MhlI	GDGCHC	4 cut(s)	1016, 1352, 2649, 3385
MlsI	TGGCCA	1 cut(s)	2772
MluNI	TGGCCA	1 cut(s)	2772
MlyI	GAGTC	7 cut(s)	218, 2216, 2579, 2768, 3144, 3255, 3457
MmeI	TCCRAC	4 cut(s)	1371, 1826, 2643, 3504
Mox20I	TGGCCA	1 cut(s)	2772
Mph1103I	ATGCAT	4 cut(s)	187, 1510, 2431, 3184
MroXI	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
MscI	TGGCCA	1 cut(s)	2772
MslI	CAYNNNNRTG	1 cut(s)	1428
Msp20I	TGGCCA	1 cut(s)	2772
MspA1I	CMGCKG	7 cut(s)	19, 642, 1065, 1751, 2256, 2282, 2603
MspI	CCGG	1 cut(s)	1798
MspR9I	CCNGG	6 cut(s)	2181, 2321, 2393, 2769, 3402, 3531
MunI	CAATTG	2 cut(s)	248, 656
Mva1269I	GAATGC	1 cut(s)	1510
MvaI	CCWGG	6 cut(s)	2181, 2321, 2393, 2769, 3402, 3531
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	6 cut(s)	11, 1071, 2285, 2288, 2294, 3308
NlaIII	CATG	8 cut(s)	68, 95, 485, 519, 1188, 1311, 2840, 3253
NlaIV	GGNNCC	8 cut(s)	744, 1350, 1395, 2047, 2127, 2647, 2648, 3528
NmuCI	GTSAC	9 cut(s)	401, 430, 1589, 1773, 2096, 2186, 2867, 2940, 3460
NsbI	TGCGCA	1 cut(s)	2035
NsiI	ATGCAT	4 cut(s)	187, 1510, 2431, 3184
NspI	RCATGY	1 cut(s)	1311
NspV	TTCGAA	1 cut(s)	604
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	1078
PciSI	GCTCTTC	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	3159
PctI	GAATGC	1 cut(s)	1510
PdmI	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
PflMI	CCANNNNNTGG	1 cut(s)	1009
PfoI	TCCNGGA	1 cut(s)	2391
PleI	GAGTC	7 cut(s)	217, 2216, 2579, 2767, 3144, 3254, 3457
PpsI	GAGTC	7 cut(s)	217, 2216, 2579, 2767, 3144, 3254, 3457
Ppu21I	YACGTR	1 cut(s)	2809
PshAI	GACNNNNGTC	2 cut(s)	1567, 3046
PsiI	TTATAA	1 cut(s)	2883
Psp124BI	GAGCTC	1 cut(s)	3385
Psp6I	CCWGG	6 cut(s)	2179, 2319, 2391, 2767, 3400, 3529
PspFI	CCCAGC	1 cut(s)	2256
PspGI	CCWGG	6 cut(s)	2179, 2319, 2391, 2767, 3400, 3529
PspN4I	GGNNCC	8 cut(s)	744, 1350, 1395, 2047, 2127, 2647, 2648, 3528
PspOMI	GGGCCC	2 cut(s)	1348, 2645
PsrI	GAACNNNNNNTAC	2 cut(s)	897, 929
PstI	CTGCAG	2 cut(s)	1318, 3434
PstNI	CAGNNNCTG	4 cut(s)	422, 1499, 2438, 2768
PsuI	RGATCY	9 cut(s)	487, 1574, 1936, 2236, 2533, 2593, 2764, 3526, 3541
PvuII	CAGCTG	6 cut(s)	642, 1065, 1751, 2256, 2282, 2603
RsaI	GTAC	9 cut(s)	76, 394, 915, 1026, 1239, 2477, 2607, 2674, 3493
RsaNI	GTAC	9 cut(s)	75, 393, 914, 1025, 1238, 2476, 2606, 2673, 3492
RseI	CAYNNNNRTG	1 cut(s)	1428
SacI	GAGCTC	1 cut(s)	3385
SacII	CCGCGG	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	468
ScaI	AGTACT	2 cut(s)	2477, 3493
SchI	GAGTC	7 cut(s)	218, 2216, 2579, 2768, 3144, 3255, 3457
ScrFI	CCNGG	6 cut(s)	2181, 2321, 2393, 2769, 3402, 3531
SduI	GDGCHC	4 cut(s)	1016, 1352, 2649, 3385
SfcI	CTRYAG	3 cut(s)	167, 1314, 3430
Sfr303I	CCGCGG	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	604
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	4 cut(s)	359, 1000, 1420, 2369
SmiMI	CAYNNNNRTG	1 cut(s)	1428
SmlI	CTYRAG	5 cut(s)	1478, 1606, 2226, 2447, 3318
SmoI	CTYRAG	5 cut(s)	1478, 1606, 2226, 2447, 3318
SpeI	ACTAGT	3 cut(s)	3116, 3488, 3575
SsiI	CCGC	8 cut(s)	17, 19, 111, 911, 1133, 1200, 2129, 2153
SspI	AATATT	1 cut(s)	2857
SstI	GAGCTC	1 cut(s)	3385
StyD4I	CCNGG	6 cut(s)	2179, 2319, 2391, 2767, 3400, 3529
StyI	CCWWGG	2 cut(s)	2049, 2900
TaaI	ACNGT	7 cut(s)	679, 1083, 1615, 2018, 2102, 2369, 2561
TaiI	ACGT	4 cut(s)	1921, 1951, 2713, 2811
TaqI	TCGA	5 cut(s)	604, 1571, 1915, 3040, 3592
TaqII	GACCGA	1 cut(s)	3225
TatI	WGTACW	6 cut(s)	74, 392, 1024, 2475, 2605, 3491
TscAI	CASTG	7 cut(s)	406, 540, 1318, 1432, 1594, 2023, 2926
TseFI	GTSAC	9 cut(s)	401, 430, 1589, 1773, 2096, 2186, 2867, 2940, 3460
Tsp45I	GTSAC	9 cut(s)	401, 430, 1589, 1773, 2096, 2186, 2867, 2940, 3460
TspGWI	ACGGA	3 cut(s)	339, 2019, 3622
TspRI	CASTG	7 cut(s)	406, 540, 1318, 1432, 1594, 2023, 2926
Van91I	CCANNNNNTGG	1 cut(s)	1009
VpaK11BI	GGWCC	4 cut(s)	359, 1000, 1420, 2369
XagI	CCTNNNNNAGG	1 cut(s)	924
XceI	RCATGY	1 cut(s)	1311
XmnI	GAANNNNTTC	4 cut(s)	348, 511, 1911, 2148
ZrmI	AGTACT	2 cut(s)	2477, 3493
Zsp2I	ATGCAT	4 cut(s)	187, 1510, 2431, 3184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.