Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8300769.1

Orthogroup ID

OG0001904

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 411

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8300769.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

gtaagcaaatggtttgaaaatgctcgccattgtgtgaaagcaggtctggctgtgcctcaagctatgagaaaacaacctaaccaagcagagactaatatcagagatgctgatcacgatggagctcagaagaatgaatcaccagggacagatgatactgtggcaggttgctgcagtcaggatgtgaaggataataaattggcgactccaaaaagcagtaaagcgaagactagtactccaaagggtagaaagaggaaatcaaggttggatcctgggggatcggatcttgatgaaaaatttaagacaccaccagaaactagtaaaggtggtcgagttacaagacgacggaaatctgttgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox PHD

Protein Analysis

119

Amino Acids

12.95

Weight (kDa)

9.92

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19510 AT3G19510 AT3G19530
fragaria_vesca	FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760 FvH4_2g04760
malus_domestica	MD05G1092200.v1.1 MD10G1100500.v1.1
prunus_persica	Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1 Prupe.8G137800_v2.0.a1
pyrus_communis	pycom05g09180 pycom10g08610
rosa_chinensis	RchiOBHm_Chr6g0254411
rosa_laevigata	RLG00000014914
rosa_multiflora	Rmu_co8217068.1_g000001 Rmu_co8296759.1_g000001 Rmu_co8300769.1_g000001 Rmu_sc0009578.1_g000001 Rmu_ssc0000121.1_g000001 Rmu_ssc0000481.1_g000002
rosa_roxburghii	Rroxscaffold_7G00210820
rosa_rugosa	Rorug05G0552100
rosa_samantha	Rh6AG069200 Rh6BG061900 Rh6CG062000 Rh6DG059000
rosa_wichuraiana	Rw6G006080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	32, 152
AclWI	GGATC	4 cut(s)	260, 273, 283, 288
AcsI	RAATTY	1 cut(s)	293
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	17
AhlI	ACTAGT	2 cut(s)	227, 314
AjnI	CCWGG	2 cut(s)	139, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	2 cut(s)	62, 122
AluI	AGCT	2 cut(s)	62, 122
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	4 cut(s)	260, 273, 283, 288
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	110
BciT130I	CCWGG	2 cut(s)	141, 270
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	83
BcuI	ACTAGT	2 cut(s)	227, 314
BfaI	CTAG	2 cut(s)	228, 315
BfmI	CTRYAG	1 cut(s)	169
BfuAI	ACCTGC	2 cut(s)	32, 152
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	141, 270
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	2 cut(s)	141, 270
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	42
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	140, 269
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	141, 270
BseDI	CCNNGG	2 cut(s)	140, 269
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	109, 265, 275, 280
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	173
BspMI	ACCTGC	2 cut(s)	32, 152
BspPI	GGATC	4 cut(s)	260, 273, 283, 288
BssECI	CCNNGG	2 cut(s)	140, 269
BssMI	GATC	4 cut(s)	109, 265, 275, 280
Bst2UI	CCWGG	2 cut(s)	141, 270
Bst4CI	ACNGT	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	4 cut(s)	112, 268, 278, 283
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	4 cut(s)	109, 265, 275, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	141, 270
BstSCI	CCNGG	2 cut(s)	139, 268
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	155
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	265, 280
BstYI	RGATCY	2 cut(s)	265, 280
BtsCI	GGATG	1 cut(s)	184
BveI	ACCTGC	2 cut(s)	32, 152
Cac8I	GCNNGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	231
CviJI	RGCY	3 cut(s)	50, 62, 122
CviKI_1	RGCY	3 cut(s)	50, 62, 122
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	4 cut(s)	111, 267, 277, 282
DpnII	GATC	4 cut(s)	109, 265, 275, 280
Ecl136II	GAGCTC	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	139, 268
EcoT38I	GRGCYC	1 cut(s)	124
FaiI	YATR	1 cut(s)	65
FaqI	GGGAC	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	2 cut(s)	228, 315
GluI	GCNGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	134, 202
HphI	GGTGA	1 cut(s)	129
Hpy188I	TCNGA	3 cut(s)	101, 126, 280
Hpy188III	TCNNGA	3 cut(s)	113, 176, 284
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 265, 275, 280
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	9 cut(s)	27, 32, 126, 147, 153, 161, 255, 282, 321
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	228, 315
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	4 cut(s)	111, 267, 277, 282
MboI	GATC	4 cut(s)	109, 265, 275, 280
MboII	GAAGA	2 cut(s)	139, 235
MflI	RGATCY	2 cut(s)	265, 280
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	194, 293
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	2 cut(s)	66, 243
MseI	TTAA	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	141, 270
MvaI	CCWGG	2 cut(s)	141, 270
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	4 cut(s)	109, 265, 275, 280
NlaIV	GGNNCC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	139, 268
PspGI	CCWGG	2 cut(s)	139, 268
PspN4I	GGNNCC	1 cut(s)	267
PstI	CTGCAG	1 cut(s)	173
PsuI	RGATCY	2 cut(s)	265, 280
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	4 cut(s)	109, 265, 275, 280
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	141, 270
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	7 cut(s)	46, 64, 79, 124, 166, 263, 325
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SpeI	ACTAGT	2 cut(s)	227, 314
Sse9I	AATT	2 cut(s)	194, 293
SspMI	CTAG	2 cut(s)	228, 315
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	139, 268
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	194, 293
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseI	GCWGC	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	147, 303
TspGWI	ACGGA	1 cut(s)	358
XapI	RAATTY	1 cut(s)	293
XspI	CTAG	2 cut(s)	228, 315
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.